Basic Information

Insect: Leptothorax acervorum
Gene Symbol: RREB1
Assembly: GCA_035220615.1
Location: JASTWQ010000073.1:94578-107980[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.4e-05 0.011 17.5 1.2 1 23 103 125 103 125 0.97

2 14 0.00021 0.037 15.9 0.1 1 23 139 161 139 161 0.98

3 14 0.00024 0.042 15.7 4.1 1 21 167 187 167 190 0.95

4 14 0.0091 1.6 10.7 0.0 3 23 288 309 286 309 0.96

5 14 0.0069 1.2 11.1 3.7 2 23 315 337 315 337 0.96

6 14 0.21 38 6.4 0.2 1 23 564 586 564 586 0.96

7 14 0.0004 0.07 15.0 0.1 1 23 595 617 595 617 0.98

8 14 0.0051 0.91 11.5 3.1 1 23 623 646 623 646 0.96

9 14 0.00058 0.1 14.5 3.1 1 23 1018 1041 1018 1041 0.97

10 14 0.00085 0.15 14.0 0.1 2 23 1312 1333 1311 1333 0.97

11 14 0.053 9.4 8.3 3.2 1 23 1406 1430 1406 1430 0.96

12 14 3.7 6.6e+02 2.5 2.1 1 23 1510 1533 1510 1533 0.95

13 14 0.014 2.4 10.2 0.4 2 23 1586 1607 1585 1607 0.94

14 14 0.0032 0.57 12.1 5.2 1 23 1613 1635 1613 1635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.4e-05	0.011	17.5	1.2	1	23	103	125	103	125	0.97
2	14	0.00021	0.037	15.9	0.1	1	23	139	161	139	161	0.98
3	14	0.00024	0.042	15.7	4.1	1	21	167	187	167	190	0.95
4	14	0.0091	1.6	10.7	0.0	3	23	288	309	286	309	0.96
5	14	0.0069	1.2	11.1	3.7	2	23	315	337	315	337	0.96
6	14	0.21	38	6.4	0.2	1	23	564	586	564	586	0.96
7	14	0.0004	0.07	15.0	0.1	1	23	595	617	595	617	0.98
8	14	0.0051	0.91	11.5	3.1	1	23	623	646	623	646	0.96
9	14	0.00058	0.1	14.5	3.1	1	23	1018	1041	1018	1041	0.97
10	14	0.00085	0.15	14.0	0.1	2	23	1312	1333	1311	1333	0.97
11	14	0.053	9.4	8.3	3.2	1	23	1406	1430	1406	1430	0.96
12	14	3.7	6.6e+02	2.5	2.1	1	23	1510	1533	1510	1533	0.95
13	14	0.014	2.4	10.2	0.4	2	23	1586	1607	1585	1607	0.94
14	14	0.0032	0.57	12.1	5.2	1	23	1613	1635	1613	1635	0.98

Sequence Information

Coding Sequence: ATGATGAGGGAGAACTGGACAGAGGGAGGGGAGGATGACGAAGAGGGAAAAAGGCGCCGCCGtcgaaagagggagagagaaagagagaatgatgTTAGGGAGGTGAAAAGGGGGACAGATACGGGACAGCAGGGTTACGAGGATAGGGTGGGAAGTGGCGTGGGAGGGAGAGAGGGCTGGAAGGAGAAAAGGACGAGGCGCAGTATGACTGGACTCGAGAATGGACCCGACCAGGAACACGAAAACGAAACGCAAATTGATGCTGCATCACCATCATCaagtGTTGAGCTGTCGGAAAACGGGGCGCATCCATGCCCGACGTGTCCGTCGGTATTTTCCAGTTCCCACGAACTAACGAATCATCTGCGCGGCCACAATTCACCTCGCAGCACGGATTGCAGCGGCGAGGAGGACTACAGCTGCGGCGTATGCAATAAAGTGCTCAGCTCGGCGAGCTCGCTGGACCGGCACGTGCTGGTACATTCGGGCGAGCGGCCGTTCAAGTGCAAGTACTGCGAAATGTCGTTCACGACGAACGGCAACATGAACCGGCACGTGAGGTGCACCCATCGGATAGTATCGCCGAACAGCTGCACGGATTCTGAGGGTAGCAGCAGCTCGGAAAGACCGGCGGCGACGAGCCAGGACGAGTACAATAACAACGAGATAGCCAGGCGCAACTCGCCAGATCTGATCGATGATCGACAGCAACCGTCGCCCAGCAACAACCGCGCGAACAAGCGGAAGTGCCCGGAAGAGGATGTCAGCGACATGGAGGATCAGAGGAGGCACAAGATCCTCCTGAACAACACCAAGATGACGATCAGGTGTCAACCGGAGGATGAGCAGAAGGCCTTCGGCTGTCCGATCTGCGGTCAGGACTTCGCGAGCAGCGCGATTCTGGAGTCTCACATGGAGCGCGTGCATCCAGGCTCCCCGGCCACGTGCGAGACCTGCAATCAGTCGTTCAAGAATCATCGCGCGCTGAATCTCCATCGTTCTATGAGACACTACAAGAAGAATCCGGAGAGCAACAACAGCCGTAGCTTGCGCAACACCGTGGACGGTTTCAGGGATCTGACGTTCATCGACTTCTCGTCCATCAAGTTCCCGACGATCGCTCGGGCGATGTGCGAGCGTGAGCTGCACCGGCCGGCCTCCGGCGAGGCCAACAGGTTCCAGTGTATGAAGTGCCTGCACGCGTTTCCCTGCAGGCTAGCCCAGCAGGCTCACGAGAAGGAATGCAAAGGTCCCTACAAGAACAAGAGAAACAGCAACGATAACAACAATAACAACGACATCAGCACCAACAACAATCTCGAAACAGAGCTGGATGATCTGAGTCCGCAACCCGACGACCCAAAGACGAAACGCGAGATCTTTTTCGCTGTGCTGGATCTGCAGAACAAGTCCTTGGCGCACGAGATGAAAGAGCCGCGGGAACCGAGCGAGATCAGGGAGCCGAAAGAGACTAAGGATCTAGCGGATATCCCGAGCATCCTGTCTGTCAGTTTGAATGGACTGCAGACCTTTCCTCGGTCGGATGCAAGCACGCCCGAGAACAACATCAAGTTCAATCCGAACGTTGGCTCTTCAGGCTCGTCGGGCACCTGTTCGTCCGAGCTCAACGAAGAGGAGGCGCAGGACGCCTTCACTGCAGAATTCCGGAAAATGAAGCTGAAGGGCGAGTTCCCGTGCAGATTGTGCACATCCGTATTTCCCAATCTGCGGGCGCTGAAGGGGCACAATCGCGCGCATATGAACGTGGAACCGGGTATGCCGTATCCGTGCAATATGTGTCCGTTCACGATCGCCGACAAGGGGGCCTTGATGAAGCATCTGAGATCACACAACGGCGACCGTCCGTTTGAGTGCTCTCTCTGCAATTATGCGTTCACTACCAAAGCAAATTGCGAGAGGCACGTGAAGAATCGTCACGGGATGATCAGCAAGGAGGACGTTAAGAACGCACTCATCTATCATCCGAGCGAGGATTCGACAAACGAAAACGTCGAAAGAAGCTCGCCCAGAGTCATCAGGGAAGACGTGCGGAAGACGCTTATTTATCCGAATGAACGCGAGGAGACTCCCCAACAACAACAGATACATTATCCGTCTATAGCGATGGATTGTAACCCTGGACCGTCGAACGTCCGCGCCGAGATGCTGATGACTCACTACGAGAAGTCAGACACGTTCGCCAGAGTGAAGATGCAGGCTCTCAATCTCGTAAAAAGAGGCGCCGATGAAGCAAATTTGCCTCACGATCTGATCGTGAAGTCTAATTATTCGAAgatcgacgacgacgtcgaGTCGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCCGGGTTGAGCTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAGAAAGCGGAAGAGGGAAAACGAGGATTCCAGCTTGCAAGAGGAGAAGCGGTTTAAGAACAATCAGCAGGAATTGTATGCCACAAACCCAGCACTGCTGCTGACCCAAGCCCTGCTGAACAGAGCACGTGAGAGCTCACCGACAACATCGCTGGAGAGTCTTTACGCGAATACTATCTATCGTAATTTCGGCACATTAACTGGTGCCAGTATAATACCGCCGTACTTCCTCAGTCCTCACATGTTCAGCCAGGAATTGGCCGCGAAGGGCAGGCTGCAGAAGGAGCTGGTTCGAGGTTTGCAGTTAACCGGCGGTGGCACACTTTCGGTTGATCCGTCACTGCCCAGCACCAGTTACACGGCATATTCGCAAACGAGGGAACCCCCGCAAACCTCAAGCGAGCAGACTGCCTACGCGAACCTGATGAGCGCGCAGATGACCAGCCAGACCGCGCCGAGCCGCGTCGAGAAAACAGATGGAATCCCGTCGAATGATCCCGTGAAGATGGTACTCAAGAACGGAGTGCTGATCCCCAAGCAGAAGCAGCGCAGATATCGAACCGAGAGACCTTTCACCTGTGAGCACTGCACGGCGAGATTTACGCTGAGGAGCAACATGGAACGACACATCAAGCAACAGCACCCGCAGTATTGGAGCCAAAGACCCCGTGGCGGACATTCAACCAGAGGAAGACCACCCGCGAGTCATCCGACTATGGTACCGACTACTGGTCCGTCAAACTCGCAGGTGGCTCAATCGTATTCGAGCATTCTTCCGAACGTCAACCCGCCGGTGGTCACATCGACGGACTACGGCACGCATCCCATTTCGGACCAAGTAAAGTACGCGATTCTAGCGCAACAGCTGAAGGTCAATAAAATGGATGACAATGATTCGGACGACGAGATGGTGATAGACGAAGAGTCGGCCAATCGAGACGCTCAGGAGCCGCAAGCTCAGCGCGAGCCTAGCACGAGCTTgctgagagatcagttggaaaGCAGCGAGGGTGTCAAAGATATCGTCGTAAAGACAGAAGCGGCTGAGCCCGCGGAGGAAACCCCGGAGGAGACCCCCGGCGAACAGACCGCACGAGGTAATGTCGACAGCATCAATCCGGAAGACTCCGCGGTTGCTGAAAGTAAATCAATACGCGCTGAAGAACCGACCATGACCGAATCCGCCGAGAGGGAGCAAGGCAAACTCGAGGACGGAACACCCGACCTCGCGAGTGTCTCGAAGCTTTTGGACAATGCGTCTCAGCAATATCAGCAATTCCAGCCGCAATACCTGAGCGACGAGGAGGGCCCGGTTGCATCGACCAGCGGCAACAATTCCGGCAGCGAGAAGTCCGACTCCATGAACTCCTTGAACTCTGGAAACGATTCCCCGTCGAAcaagaagaggaaaaagaagaagaagtctGCGTATTCGATGGCGCCGAATCGCGTCGTATGCCCGTACTGCGAGCGCCAGTTCCCGTGGACCTCGTCGTTGAGACGACACATCCTCACCCACACCGGCCAGAAGCCGTATCAGTGCATTCACTGCTCGCATCACTTCACCACCAAGTCAAACTGCGACCGCCACCTGCTGAGGAAACATAAGGCGAAGGCGAACAAGATGCGCCGTGCCAGGAACTCGTCTTCGCCTGACGCTCAGGTGGTCGCCAGCAGCAGTAGCAGTAGCAACGGCAGCAACACGTTCTCCATGAGAAACGTGCCCGAGAGGCCGTTCAAATGCCATCAGTGTCCGAGTTCGACATTCGCCACGTTGGGCAATCTGAAGAAGCACCGGTCGAGCAAGCACCGCAAGGCCGCGTCCAGGTCAGAGTCCAGCGATCAGCAGAACAGCCCGGCGCAGTGCACCGCGCAGAACGACCAGAGCGATTACGAGAGTCGCTCGTCCAGCATGTCCGACAACATGGAGAACACACCGTCCGTCATCGCAGCCGTGAAGCCAACTTCTAACGCGTCCCCCTCGATACATGACGTCACCAGGTCGCGCAAATCACCAAGATTGTCGCCAAGTCCCGGCGACGTGCCCTTTAAATGTTATCTGTGCGACAGCGGCTTCTCGGAACGCCAGGACTGCTTGGACCACATCAAGATGAATCACAAGCGCTCGTACGAGATGCTGAAGGCCAAGGGCGCTCTCGATATGGCGTCCATGAACATCGACGCGACCGAGGATCAGATATTAGCGTCGCAGCAACACCCCAGCGACGGAGAAGAGAAGAAAGGCCGTTTTCCTGACTACAGCAACAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAGGATCTCCGGCGTCACATGAGGACCCACACGGGAGAGAGGCCCTTCGAATGCGACATCTGCACCAGGAAATTCACGCTCAAGCACAGCATGCTGCGTCACCGTAAGAAGCACGAGTCGGTGGACTCCGCCATGTACATAGGCAACAGCGGCGACGAGGAGAACTCGCCGGCGCAGCCGCCGACGATAACCCCCAGGAGTCAGCAGCACTCGCCGATCTCCACCAACACCAGCAGGCCCCGCACCCAGGACAGAATCTCCCTGCCGACCGTAGCGGCGGTCGCGACGGGGGACGCGGCGCCCTGTGCCCTGATGCGGTACAATCACTACGACAACATGGCCACTCTCACCGGAAGAATGGCAAACGATGGTCCCCAGGGCGCCGCTCCAGCCGTCTTACCTTCTCCCCCGCCTCCCGCGGAGGTACCAAGCGAGAGCGGGGACAACGACCTGATCTCCAATTTGCTGGGGATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTGAGCTCGGCGGACGACGCGGCGAAGTTGTTGGGGGTCAACCATAGCGAGTGA
Protein Sequence: MMRENWTEGGEDDEEGKRRRRRKRERERENDVREVKRGTDTGQQGYEDRVGSGVGGREGWKEKRTRRSMTGLENGPDQEHENETQIDAASPSSSVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMSFTTNGNMNRHVRCTHRIVSPNSCTDSEGSSSSERPAATSQDEYNNNEIARRNSPDLIDDRQQPSPSNNRANKRKCPEEDVSDMEDQRRHKILLNNTKMTIRCQPEDEQKAFGCPICGQDFASSAILESHMERVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNPESNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRLAQQAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETELDDLSPQPDDPKTKREIFFAVLDLQNKSLAHEMKEPREPSEIREPKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNVGSSGSSGTCSSELNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTIADKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRVIREDVRKTLIYPNEREETPQQQQIHYPSIAMDCNPGPSNVRAEMLMTHYEKSDTFARVKMQALNLVKRGADEANLPHDLIVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKRENEDSSLQEEKRFKNNQQELYATNPALLLTQALLNRARESSPTTSLESLYANTIYRNFGTLTGASIIPPYFLSPHMFSQELAAKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYTAYSQTREPPQTSSEQTAYANLMSAQMTSQTAPSRVEKTDGIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPTMVPTTGPSNSQVAQSYSSILPNVNPPVVTSTDYGTHPISDQVKYAILAQQLKVNKMDDNDSDDEMVIDEESANRDAQEPQAQREPSTSLLRDQLESSEGVKDIVVKTEAAEPAEETPEETPGEQTARGNVDSINPEDSAVAESKSIRAEEPTMTESAEREQGKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSPSNKKRKKKKKSAYSMAPNRVVCPYCERQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDAQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKAASRSESSDQQNSPAQCTAQNDQSDYESRSSSMSDNMENTPSVIAAVKPTSNASPSIHDVTRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKMNHKRSYEMLKAKGALDMASMNIDATEDQILASQQHPSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEENSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATGDAAPCALMRYNHYDNMATLTGRMANDGPQGAAPAVLPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -