Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: RREB1
Assembly: GCA_000204515.1
Location: NW:298477-317332[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3e-05 0.0018 17.9 1.3 1 23 41 63 41 63 0.97

2 14 6.4e-05 0.0039 16.9 0.1 1 23 77 99 77 99 0.98

3 14 9.6e-05 0.0058 16.3 5.5 1 21 105 125 105 128 0.95

4 14 0.3 18 5.3 0.1 3 23 226 247 224 247 0.96

5 14 0.0042 0.25 11.1 3.7 2 23 253 275 253 275 0.96

6 14 0.13 7.9 6.5 0.2 1 23 502 524 502 524 0.96

7 14 1.5e-05 0.00088 18.9 0.2 1 23 533 555 533 555 0.98

8 14 0.0031 0.19 11.6 3.1 1 23 561 584 561 584 0.96

9 14 0.00035 0.021 14.5 3.1 1 23 953 976 953 976 0.97

10 14 0.00017 0.01 15.5 0.2 2 23 1243 1264 1242 1264 0.97

11 14 0.032 1.9 8.4 3.2 1 23 1337 1361 1337 1361 0.96

12 14 4.9 3e+02 1.5 1.7 1 23 1441 1464 1441 1464 0.90

13 14 0.0022 0.14 12.0 0.5 3 23 1518 1538 1516 1538 0.96

14 14 0.002 0.12 12.2 5.2 1 23 1544 1566 1544 1566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3e-05	0.0018	17.9	1.3	1	23	41	63	41	63	0.97
2	14	6.4e-05	0.0039	16.9	0.1	1	23	77	99	77	99	0.98
3	14	9.6e-05	0.0058	16.3	5.5	1	21	105	125	105	128	0.95
4	14	0.3	18	5.3	0.1	3	23	226	247	224	247	0.96
5	14	0.0042	0.25	11.1	3.7	2	23	253	275	253	275	0.96
6	14	0.13	7.9	6.5	0.2	1	23	502	524	502	524	0.96
7	14	1.5e-05	0.00088	18.9	0.2	1	23	533	555	533	555	0.98
8	14	0.0031	0.19	11.6	3.1	1	23	561	584	561	584	0.96
9	14	0.00035	0.021	14.5	3.1	1	23	953	976	953	976	0.97
10	14	0.00017	0.01	15.5	0.2	2	23	1243	1264	1242	1264	0.97
11	14	0.032	1.9	8.4	3.2	1	23	1337	1361	1337	1361	0.96
12	14	4.9	3e+02	1.5	1.7	1	23	1441	1464	1441	1464	0.90
13	14	0.0022	0.14	12.0	0.5	3	23	1518	1538	1516	1538	0.96
14	14	0.002	0.12	12.2	5.2	1	23	1544	1566	1544	1566	0.98

Sequence Information

Coding Sequence: ATGGACTATTCGAAGAAAGTGACTGGATCCGAGAATGGACCCAGCCAGGAACAGGAAAACGAAACGCAAATTGATGCTGCATCACTATCATcaagtGTTGAGCTGTCGGAGAATGGCGCGCATCCATGCCCGACGTGCCCGTCGGTATTTTCCAATTCCCACGAACTGACGAATCATCTGCGCGGCCACAATTCACCTCGCAGCACAGACTGCAGCGGCGAAGAGGACTACAGTTGCAGCGTATGTAATAAAGTACTTAGTTCGGCGAGTTCGTTGGATCGACACGTGCTGGTGCACTCAGGCGAACGACCGTTCAAATGCAAACATTGCGATATGTCATTCACGACGAATGGCAACATGAACCGGCACGTGAGGTGTACCCATCGGATGGTGTCGCCGAACAGTTGCACGGACTCTGAAGGCAGCAGCGGTTCGGAAAGACCGGTGGGGACAAGTCAAGACGAGTACAACAATAATGAGATAGCTAGGCACAATTCTCCGGACCTAATCGACGATCGACAGCAACCGTCGCCCAGCAACAACCGCGGAAACAAGCGGAAATGCGCGGACGAGGACATCAGTGACATGGAGGACCAGAGGAGGCATAAGATCCTCTTGAATAACACCAAGATGTCGATCAGGTGTAGGCCAGAGGATGAGCAAAAAACCTTTGGTTGTTCGCTTTGCAGTCAGGATTTCGCAAGCAGTGCGATTTTGGAGTCTCATATGGAGCGCGTACATCCGGGTTCTCCAGCTACATGCGAGACCTGCAACCAATCGTTCAAGAATCATCGTGCGTTAAACCTTCATCGTTCAATGAGACACTACAAGAAGAACTCGGAAGGCAACAACAGCCGTAGCCTGCGCAATACTGTGGACGGTTTCAGGGATCTGAcgtttattgatttttcgtCCATCAAATTTCCAACGATCGCTCGGGCGATGTGCGAGCGTGAACTGCATCGGCCGGCCTCTGGTGAAGCCAATAGGTTCCAGTGCATGAAGTGCTTGCACGCGTTTCCCTGCAGACAGGCCCAACTGGCCCATGAAAAGGAATGCAAGGGTCCCTACAAGAACAAAAGAAACAGCAACgacaacaataataacaatgatatTAGTACCAACAACAATCTCGAGACAGAGCTGGACGATCCGAGCCCGCAGCCCGATGATCCCAAGACGAAGCGCGAGATATTCTTCGCTGTGTTGGATCTACAGAACAAGTCTTTGTCGCACGAGACGAAAGAGCCACGAGAACCAAGCGAAATCAGGGAATCGAAAGAGATTAAGGATTTAGCGGATATCCCGAGCATCTTATCTGTTAGTCTGAATGGATTGCAGACCTTTCCTCGATCGGATGCGAGCACGCCTGAGAATAACATCAAGTTCAATTCGAATATTGGCTCTTCAGGTTCCTCAGGCACTTGTTCGTCCGAATACAATGAAGAAGAAGCGCAAGATGCCTTCACCGCGGAATTCCGGAAAATGAAACTGAAGGGCGAATTCCCATGTAGACTATGCACATCTGTATTTCCCAATTTGAGAGCATTGAAGGGACACAATCGCGCGCATATGAACGTGGAACCGGGTATGTCATATCCGTGCAATATGTGTCCTTATAGCAGTACTGACAAGGGAGCTCTGATGAAGCATCTGAGATCGCATAACGGTGACAGGCCGTTCGAGTGCTCTCTCTGCAATTATGCGTTTACCACCAAAGCGAATTGTGAGAGGCACGTGAAGAATCGTCACGGGATGATCAGCAAAGAAGACGTTAAGAATGCACTAATCTATCATCCAAATGAAGATTCGACAAATGACAACATCGAAAGAAGCTCGCCTAGAGTCATCAGAGAAGATGTGCGGAAGACGCTCATTTATCCGAATGAACGTGAAGAAACTCCTCAACAACAAATACATTATCCGTCTATAGCGATGGATTGTAATCCTGGACCATCGAATATTCGCCCTGAGATACTGATGAATCGCTATGATAAGTCGGATACATTCACTAGAGTGAAAATGCAGGCTCTTAATCTTGTCAAAAGAAACGCCGACGAAGCAAATCTGTCTCACGATTTGCTCGTAAAATCTAATTACTCGAAGATCGACGACGATGTCGAGTCGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCTGGGTTGAGCTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAgaaagcgaaagagagaaaacgagGATTCTGGTTCGCAGGAGGAGAAGCGATTTAAGAGCAATCAACAGGAATTGTACGCCACGAATCCAGCGTTGCTGCTGACTCAAGCTCTGCTGAACAGAGCACGTGAGAGCTCACCAACGACGTCGCTGGAGACTCTTTATGCGAATACTATTTATCGCAATTTCGGCACGTTAACCGGTGCCGGCATGATACCGCCATACTTCCTCAGTCCTCATATGTTCGGCCAGGAATTAACGAAGGGCAGGCTGCAGAAGGAACTGGTTAGAGGTTTGCAGCTCACTGGTGGCGGCACACTTTCAGTGGATCCGTCACTGCCCAGCACCAGTTACGCAGCGTATCCGCAAACAAGGGACACTCCGCAACCCTCGAGTGAGCAAAATGCTTACGCAAACTTGATGAATACGCAGATTACTAATCAGACCGCGCCGAGCCGTGAAAAAACAGATGCTATCCCGTCGAACGATCCCGTGAAGATGGTACTCAAGAATGGAGTGTTAATCCCTAAGCAAAAGCAACGTAGATATCGTACTGAGAGACCTTTTACTTGTGAGCATTGCACGGCGAGATTCACATTAAGGAGTAACATGGAACGACATATCAAGCAACAGCATCCACAGTATTGGAGCCAAAGACCTCGCGGTGGACATTCGACTAGAGGCCGACCGCCCGCAAGTCATCCAAATATGGTACAGACTACTGGTCCATCATCCTCGCAAATAGTTCAACCATATTCGAGCATTCTTCCGAACGTCGACACGCCGGGGATCACATCGACGGATTACGGCACACATCCTATCTCGGACCAAGTAAAATACGCGATTTTGGCGCAACAGCTGAAGACCAATAAAATAGATGACAATGATTCAGACAACGAAATGGTGATAGACGAGGAGCCGGCCGATCAGGACGTTCAGGAGTCGCAAGCTCAACGCGAGCCTAGCATGAGTTTATTGAGAGACCAGTTGGAAAACAGCGATGGTGTTAAAGATATCCTTGTAAAAACGGAAGCGGCCGAATCAACGGAGGAAACCTCGGAAGAAACCCACGGTGAACAGATCACACGAAATAACATCGACGCCGACCTGGAAGAATCCGCAGCTGAAAGCAAATCAATACGCACTGAAGAAATGACACAATCCACTGAAAAGGAACAAGGCAAACTTGAAGACGGAGCGCCCGACCTCGCTAGTGTCTCAAAGCTTTTAGACAATGCGTCTCAGCAATATCAGCAATTTCAACCGCAATATTTGAGTGACGAGGAGGGTCCCGTTGCGTCGACCAGCGGTAATAACTCCGGCAGCGAGAAGTCCGATTCCATGAATTCCTTGAACTCCGGGAATGATTCTTCGCCgaataagaagaagaaaaagaagaagaaatctgcaTACTCAATGGCACCGAACCGCGTTTCATGTCCATATTGTGACCGTCAATTTCCATGGACTTCGTCGCTAAGACGACACATTCTCACCCACACCGGCCAGAAGCCATATCAGTGTATCCACTGTTCGCATCATTTCACTACCAAGTCCAACTGCGACCGCCATTTGTTGAGAAAGCACAAGGCGAAAGCGAACAAGATGCGCCGTGTCAGGAACTCATCCTCGCCGGACGTCCAGGTGGTCGCTAGCAGCAGCAGTAGCAGCAACGGCAGCAACACGTTCTCCATGAGGAATGTGCCCGAGAGGCCGTTCAAATGTCATCAGTGCCCAAGCTCGACGTTCGCCACGTTGGGCAATCTGAAGAAGCACCGGTCGAGTAAACACCGCAAGAACGCGTCCAGATCGGAATCTAGCGATCAACAAAACAGTCCGCCTCAATGCCCCGCACAAAATGATCAGAGCGATTACGAGAGCCGTTCATCGAGCATGTCCGACAACATGGAGAACACGTCGTCTGCCGTCGCAGCCGCGAAACCGACTTCTACCGTATCACCCTCGATAAATGACGCCACCAAATCGCGCAAATCACCAAGATTGTCACCGAGTCCCGGTGATGTACCCTTCAAATGTTATCTGTGCGACAGCGGTTTCTCGGAACGGCAAGACTGCCTGGACCACATCAAAGCCAATCATAGTCGTTCGTACGATATGTTGAAGGCCAAAGGGGCTCTCGATATGGCGTCTATGAATATAGATGCAAACGAAGATCAGATGTTAGCGTCGCACCAACATCTCAGCGACGGAGAAGAGAAGAAAGGCCGTTTTCCTGATTACAGCAACAGAAAGGTTATGTGCGCTTTCTGCTTGAGACGATTTTGGTCCGCGGAGGATCTTCGACGTCACATGAGGACCCACACGGGTGAGAGGCCCTTCGAATGCGATATATGCACCAGGAAATTCACGCTCAAACATAGCATGCTACGCCATCGTAAGAAACATGAGTCAGTGGACTCTGCCATGTATATAGCTAACAGCGGCGACGAGGACAATTCGCCCGCGCAACCACCAACGATAACACCCAGGAGTCAACAGCACTCGCCGATCTCCACCAACACCAGCAGGCCCCGCACCCAGGATAGAATCTCTTTGCCGACCGTTGCGGCGGTAGCAACAGCGGACGCGGCACCTTGTGCCTTGATGCGATACAATCACTATGATAACATGGCCACTCTCACCGGTAGAATGGCGAACGACGGCACCCAGGGTGCCGCATCCGCTCCGCTGCCTTCTCCGCCGCCTCCCGCGGAGATACCCAGTGAGAGCGGAGACAACGACTTGATCTCTAATTTGTTGGGTATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTAAGCTCGGCGGATGACGCGGCGAAGTTGTTGGGGGTGAACCATAATGAGTAA
Protein Sequence: MDYSKKVTGSENGPSQEQENETQIDAASLSSSVELSENGAHPCPTCPSVFSNSHELTNHLRGHNSPRSTDCSGEEDYSCSVCNKVLSSASSLDRHVLVHSGERPFKCKHCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSGSERPVGTSQDEYNNNEIARHNSPDLIDDRQQPSPSNNRGNKRKCADEDISDMEDQRRHKILLNNTKMSIRCRPEDEQKTFGCSLCSQDFASSAILESHMERVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNSEGNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETELDDPSPQPDDPKTKREIFFAVLDLQNKSLSHETKEPREPSEIRESKEIKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNSNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMSYPCNMCPYSSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPNEDSTNDNIERSSPRVIREDVRKTLIYPNEREETPQQQIHYPSIAMDCNPGPSNIRPEILMNRYDKSDTFTRVKMQALNLVKRNADEANLSHDLLVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKRENEDSGSQEEKRFKSNQQELYATNPALLLTQALLNRARESSPTTSLETLYANTIYRNFGTLTGAGMIPPYFLSPHMFGQELTKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYAAYPQTRDTPQPSSEQNAYANLMNTQITNQTAPSREKTDAIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPNMVQTTGPSSSQIVQPYSSILPNVDTPGITSTDYGTHPISDQVKYAILAQQLKTNKIDDNDSDNEMVIDEEPADQDVQESQAQREPSMSLLRDQLENSDGVKDILVKTEAAESTEETSEETHGEQITRNNIDADLEESAAESKSIRTEEMTQSTEKEQGKLEDGAPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSPNKKKKKKKKSAYSMAPNRVSCPYCDRQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKNASRSESSDQQNSPPQCPAQNDQSDYESRSSSMSDNMENTSSAVAAAKPTSTVSPSINDATKSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKANHSRSYDMLKAKGALDMASMNIDANEDQMLASHQHLSDGEEKKGRFPDYSNRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIANSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGTQGAASAPLPSPPPPAEIPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -