Basic Information

Insect: Prenolepis imparis
Gene Symbol: RREB1
Assembly: GCA_030444845.1
Location: JAUDTA010000005.1:3011710-3022832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.3e-05 0.0065 18.3 1.2 1 23 156 178 156 178 0.97

2 15 0.0002 0.038 15.9 0.1 1 23 192 214 192 214 0.98

3 15 0.00022 0.044 15.7 4.1 1 21 220 240 220 243 0.95

4 15 0.0002 0.039 15.8 0.0 1 23 339 362 339 362 0.97

5 15 0.0044 0.86 11.6 6.6 2 23 368 390 368 390 0.96

6 15 0.2 40 6.4 0.2 1 23 613 635 613 635 0.96

7 15 0.00011 0.021 16.7 0.2 1 23 644 666 644 666 0.98

8 15 0.0049 0.95 11.5 3.1 1 23 672 695 672 695 0.96

9 15 0.0043 0.84 11.6 2.2 3 23 1061 1082 1059 1082 0.96

10 15 0.00054 0.11 14.5 0.1 2 23 1354 1375 1353 1375 0.97

11 15 5.7 1.1e+03 1.8 11.8 1 23 1381 1404 1381 1404 0.96

12 15 0.0047 0.93 11.5 2.2 1 23 1449 1473 1449 1473 0.97

13 15 0.14 28 6.8 1.8 1 23 1550 1572 1550 1573 0.96

14 15 0.013 2.5 10.1 0.4 2 23 1624 1645 1623 1645 0.94

15 15 0.003 0.6 12.1 5.2 1 23 1651 1673 1651 1673 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.3e-05	0.0065	18.3	1.2	1	23	156	178	156	178	0.97
2	15	0.0002	0.038	15.9	0.1	1	23	192	214	192	214	0.98
3	15	0.00022	0.044	15.7	4.1	1	21	220	240	220	243	0.95
4	15	0.0002	0.039	15.8	0.0	1	23	339	362	339	362	0.97
5	15	0.0044	0.86	11.6	6.6	2	23	368	390	368	390	0.96
6	15	0.2	40	6.4	0.2	1	23	613	635	613	635	0.96
7	15	0.00011	0.021	16.7	0.2	1	23	644	666	644	666	0.98
8	15	0.0049	0.95	11.5	3.1	1	23	672	695	672	695	0.96
9	15	0.0043	0.84	11.6	2.2	3	23	1061	1082	1059	1082	0.96
10	15	0.00054	0.11	14.5	0.1	2	23	1354	1375	1353	1375	0.97
11	15	5.7	1.1e+03	1.8	11.8	1	23	1381	1404	1381	1404	0.96
12	15	0.0047	0.93	11.5	2.2	1	23	1449	1473	1449	1473	0.97
13	15	0.14	28	6.8	1.8	1	23	1550	1572	1550	1573	0.96
14	15	0.013	2.5	10.1	0.4	2	23	1624	1645	1623	1645	0.94
15	15	0.003	0.6	12.1	5.2	1	23	1651	1673	1651	1673	0.98

Sequence Information

Coding Sequence: ATGGAGGGTGCGTTGGAGGGGGAGGGCGGTGGAGAGGGGGAAGAAGGAGATAAAAAAAGGCTCCGGGAAAGAGATGAAAGGCGGCGGCCAATCGCGACGCGGCCCGGCGTCAGGTCGTCGTCGACCCCCACCACGGCTGCTTCAGCGCAGCATCCTACGATTCGTAGGTGGCATCGCATCGGGGCGAGCGAAACGGAAATGCGCATGTACGCCCTTGTGCCGACACGACACTGCTCCCTTTTTCCCTCGAGGCTCCCCCGGCGAGGTCCCGAGCGAGGGTGCAATGCAGATATAGGCGTGGCATTCTGGTCCTCCAGAGCTCGCTCGCTCTCGATTCCCTTGAAACCGTGGCGCGATTACGGGACGGTTGAATCTGAAAATGGAACCGATCAAGAACAGGAAAACGAAACACAAATTGATGCCGCATCACCATCATCAAGCGTCGAGCTGTCGGAGAACGGTGCGCATCCGTGTCCGATGTGTCCATCGGTATTTACCAATTCTCACGAACTGACGAATCATCTGCGTGGCCATAACTCACCTCGCAGCACAGACTGCAGCGGCGAGGAGGACTACAGCTGCGGGGTTTGCAACAAGGTGCTTAGCTCGGCTAGCTCGCTGGATCGACACGTGTTGGTACACTCCGGCGAGCGACCTTTCAAGTGCAAGTACTGCGAGATGTCGTTCACGACGAACGGCAACATGAACCGGCACGTGAGATGCACCCACCGAGTAGCGTCGCCGAACAGTTGCACGGACTCCGAGGGCAGCAGCGGTTCGGAGAGGCCTGCCACGACGAATCCGGACGAGTACAACAACAACGAGTTAGCCAGGCGCAACTCACCGAGCCTGATCGACGACCGGCAACAGGCGTCGTCTCCTGGTAGTCATCGCGCGAGCAAGCGCAAATTGCAAGACGACACCAGCGACACGGAGGAGCAGAAGAGGCACAAAACCCTGATGAATAACGGCACCATGATGATCAGGGTCCAACAGAACGGCGGGGAGATGACATTCGAGTGTCTCATCTGCGGCAAAGACTTCGTCACGGAAGCGATGCTGGATACTCATATGGAACGCGCGCATCCGAAGTCCTTGGCCACCTGCGAGATCTGCAACACATCGTTCAAGAGTCACCGGCAATTGAACCATCATCGTTTCACGAGTCATTGCAAGAAGAACGCGGGCGGTAACAACAGCCGTCGCAGCATCGTGGACGGTTTCAACGATCTCACTCACCTAGAATTTTCGTCACCGAACTTCCCGATGATCGCCCGAAGGGTGTGCGAGCAGGAGCTGCACCTCGCCTCCGGCGAGGTCCAGTTCCAGTGCATGAAGTGTCTGCATGCGTTCCCATGCAAGCAGGCGCAGCTCGATCACGAAAAGGAGTGCAAGAGTTCCTGCAAGAGCAAGAGAAACAGCAACGATAGCAATAATAACAATGACAATACCAACAATAATCTGGAAACGGAACTGGACGCTCCGTCCCCGCAGCCCGACGATCCCAAAACGACGCGCGAGATCTTTTTCGCCGTGCTAGATCTGCAGAATAAATCATCATTGGCACGCGAGGCAAAGGAACCCAGAGAGCCGCAGGAGATTAAGGACCTGAAGGAGGTGAAGGATCTGGCGGATATCCCGAGCATCTTGTCCGTCAGTTTGAACGGATTGCCGACCTTCCCGCGATCGGACACCAGCACGCCCGAGAATAACATCAAGTTCAATCCGAATATCGGCTCTTCGGGTTCCTCGGGCACCTGCTCGTCTGAATATAACGAAGAAGAGGCACAGGATGCCTTCACCGCGGAATTTCGGAAGATGAAGCTGAAGGGCGAGTTTCCCTGCAGACTTTGCACGTCCGTGTTCCCCAATTTGCGGGCACTCAAGGGGCACAATCGCGCGCATATGAACGTAGAACCAGGAATGCCGTATCCGTGCAATATGTGTCCCTTCACCAGTACCGACAAGGGGGCTTTGTTAAAGCACCTGAGATCCCATAACGGTGACCGACCTTTCGAATGTTCCCTTTGCAATTATGCGTTTACCACCAAGGCCAATTGCGAGAGGCATGTGAAGAACCGTCATGGAATGATCAGCAAGGAAGATGTTAAGAATGCGCTGATCTATCATCCGAGCGAGGACTCGACGAACGAAAACGTCGAGAGAAGTTCACCCAGAAGTATTAGAGATGACGTGCGAAAGTCGCTCGTCTATCCGAATGAGCGCGAGGAAACCTCTCAACAGCAGATACATTATCCGCCTGTATCGATGGACTGTAACCCGGGACCTTCGAACGTTTGCGCTGAGATGCTGATGAATCGCTACGAGAAGCCGGACATGTTTCACAGACCGACAAAGATACAGGCTCTGAATCTCGTGAAAAGAAACGCCGAGGACTCGAACATATCTCATGATCTGATCGTGAAGTCTAATTATTGTAAGATCGACGAGGACGCCGATTCAAGATCATCGGATGGCAGCGTATCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAATCTGACCAAGTCTACGACAAGCTCCGTATTGAGTTCGGGGGAGGACGGTCCGTTGGATCTGTCTATGGACGTTGTTCTGGATCTGAGCAGGAAACAGAAGAAGGAGAACGAAAATTCAGAGGAGAAACGTTTTAAGAACAATCAACAGGAACTGTACGCCGCGAATCCGGCGTTGCTGTTGACTCAAGCTCTGCTGAACACAGCACGCGAGAATTCGCCGTCGCTGGAGAACTTGTACGCGAGTACCCTTTATCGCAATCTCGCCGGTGCCTCCATGATACCGCCGTATTTCCTCAATCCTCACATGTTCAGCCAGGAATTGGCCGAGAAGGGCAGACTGCAGAAGGAGCTCGTCAGGGGTTTGCAGTTGACCGGCGGCAGCACTCTTCCCGTGGATCCGTCACTGCCTAGCACCAGTTATGCTGCATTCGCGCAGGCGCGAGACACCCCGCCAATCTCGAGCGAACACAACACTTACGCGAACCTGATGAACGCCCAGATAGTCAGCCAGGTCGCATCGAGCCGCGATAAAACGGACGGTATTTCATCGAACGATCCCGTGAAGATGGTACTCAAAAATGGCGTGCTGATCCCCAAGCAGAAGCAGCGTAGATACCGCACCGAGAGACCATTCGGCTGCGAGCACTGCACGGCAAGATTCACTTTGCGAAGTAACATGGAACGACACATCAAGCAACAACATCCTCAGTATTGGAGCCAAAGACCTCGCGGTGGACATTCAACCCGAGGCAGACCGCCCGCGAATCATTCGTCTATGTTGCAGAATCCTGGACCGTCGACCTCGCAAATAACTCAACCGTATCCGAACATCCTCCCAAACTCATCAATGGTTACATCGGCGGACTATAACACGCATCCTATCTCAGATCAAGTAAAGTACGCCATTCTAGCACAACAATTAAAAGCCGATAAAATGGATGACAATGATTCAGATGACGAAATGGTAATAGATGAGGAATCAACCAACAGGGATGGTCAAGAGTCGCAAACTCAGCACGAGTTCAGCACGAGCTTGCTTAGAGATCAGTTAGAGAGCAACGAGGGCAACGTTAAAGACGTCGTCGTGAAGAAGGAAGTGTTTGAGCCCGCGGAAGATACCTCGGAAGAATCTCATGATGAACAGGCTGCGCGAAACGGCGTAGACAGGACCAGCGCGGAAGAATCTACCACTGCTGAAAACAAGTCGACACGCACCGAAGATACGAAGATCAAAACGGAACCCACCGGGAAAGAGCAGCAGGGCAAACTCGAGGACGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTCTTGGACAACGCGTCTCAGCAGTATCAGCAATTTCAACCGCAATACCTGAGCGACGAGGAAGGCCTCGTGGCCTCGACCAGCGGCAACAATTCCGGCAGCGAAAAGTCCGACTCCATGAATTCTTTAAACTCCGGAAATGAGTCTTCGTCgactaagaaaaagaagaagaagaagaagtccGCGTACTCGATGGCACCGAATCGAGTCCCGTGTCCTTTTTGCCCGCGTCAATTTCCCTGGAGCTCATCGCTGAGACGGCACATTCTCACTCACACCGGTCAGAAGCCGTTTCAGTGCATGCACTGCTCCCATCACTTCACCACCAAGTCCAACTGCGACCGCCACTTGTTGAGGAAACACAAGGCGAAGGCGAAGGCGAATAAGATGCGCCGTGTCAGAAACTCTTCCTCGCCGGACGTTCAGGTGGTTGCGAGCAGCAGCAGTAGTAGCAGCAACAACACGTTTTCCATGAGAAACGTGCCCGAGAGACCATACAAGTGCAATCAGTGCCCGAGCTCGACCTTCTCCACATTAGGCAATCTGAAGAAGCACCGATCGACCAAGCATCGCAAGACTACGTCCCGGTCGGAGTCTAGCGATCAACAAAACAGTCCACCGCAATGTTCCAACACGCAGAACGATCAAAGTGACTACGAGAGCCGGTCTTCGAGCGCGTCCGAGAACACGGAGAATCCTGCAGCCACGAAGGCGAATTCTAACATGACGTCGTCCATGAACGAGACCATCCGATCACGCAAGTCACCTAGATCGTCGCCTGGTCCCAGCGATGTTCCCTTCAAATGTTACTTGTGCGACAGCGGCTTTTCCGAACGTCAAGATAATCTGGATCACATTAAAATGCATCACAAGCGCTCGTACGATATGTTGAAGGCCAAGGGCGCCCTCGATATGGCGACTATGAATATTGATGCGAGCGAAGATCAGATGGGACATCAACATCCTAGTGACGGCGAAGAGAAGAGAGGTCGCTTTCCTGATTACAGCAATAGAAAgGTCGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAGGATCTCCGACGTCACATGAGGACTCACACGGGCGAGAGGCCCTTCGAATGCGACATCTGCACCAGGAAGTTCACGCTGAAGCACAGCATGCTGCGCCACCGTAAGAAGCACGAATCCGTGGATTCCGTCATGTACATAGGCAACAGCGGTGACGAGGACAACTCGCCCTCGCAGCCGCCGACGATAACACCTAAGAGTCAGCAGCATTCCTCGATCTCCACGAACACCAGCAGGCCCCGTACCCAGGACAGAATCTCTCTGCCGACCGTAGCGGCGGTCGCGACGGCGGACGCGGCACCCTGTGCTCTTATGCGGTACAATCACTATGACAACATGGCTACTCTCACCGGCAGAATGGCAAACGACGGTTCACAGAGCACCGCGCCTGCTCCTATACTTTCCCCACCACCTCCTGCGGAGATACCCAGCGAGAGCGGCGACAACGACTTGATCTCCAATCTGTTGGGAATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTCAGCTCGGCAGACGACGCGGCCAAGTTGTTGGGCGTGAAGCATAGCGAGTGA
Protein Sequence: MEGALEGEGGGEGEEGDKKRLRERDERRRPIATRPGVRSSSTPTTAASAQHPTIRRWHRIGASETEMRMYALVPTRHCSLFPSRLPRRGPERGCNADIGVAFWSSRARSLSIPLKPWRDYGTVESENGTDQEQENETQIDAASPSSSVELSENGAHPCPMCPSVFTNSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMSFTTNGNMNRHVRCTHRVASPNSCTDSEGSSGSERPATTNPDEYNNNELARRNSPSLIDDRQQASSPGSHRASKRKLQDDTSDTEEQKRHKTLMNNGTMMIRVQQNGGEMTFECLICGKDFVTEAMLDTHMERAHPKSLATCEICNTSFKSHRQLNHHRFTSHCKKNAGGNNSRRSIVDGFNDLTHLEFSSPNFPMIARRVCEQELHLASGEVQFQCMKCLHAFPCKQAQLDHEKECKSSCKSKRNSNDSNNNNDNTNNNLETELDAPSPQPDDPKTTREIFFAVLDLQNKSSLAREAKEPREPQEIKDLKEVKDLADIPSILSVSLNGLPTFPRSDTSTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRSIRDDVRKSLVYPNEREETSQQQIHYPPVSMDCNPGPSNVCAEMLMNRYEKPDMFHRPTKIQALNLVKRNAEDSNISHDLIVKSNYCKIDEDADSRSSDGSVSLVSDTKTDTHQRIQASPMNLTKSTTSSVLSSGEDGPLDLSMDVVLDLSRKQKKENENSEEKRFKNNQQELYAANPALLLTQALLNTARENSPSLENLYASTLYRNLAGASMIPPYFLNPHMFSQELAEKGRLQKELVRGLQLTGGSTLPVDPSLPSTSYAAFAQARDTPPISSEHNTYANLMNAQIVSQVASSRDKTDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHSSMLQNPGPSTSQITQPYPNILPNSSMVTSADYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESTNRDGQESQTQHEFSTSLLRDQLESNEGNVKDVVVKKEVFEPAEDTSEESHDEQAARNGVDRTSAEESTTAENKSTRTEDTKIKTEPTGKEQQGKLEDGAADLASVSKLLDNASQQYQQFQPQYLSDEEGLVASTSGNNSGSEKSDSMNSLNSGNESSSTKKKKKKKKSAYSMAPNRVPCPFCPRQFPWSSSLRRHILTHTGQKPFQCMHCSHHFTTKSNCDRHLLRKHKAKAKANKMRRVRNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDQSDYESRSSSASENTENPAATKANSNMTSSMNETIRSRKSPRSSPGPSDVPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMATMNIDASEDQMGHQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSVMYIGNSGDEDNSPSQPPTITPKSQQHSSISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQSTAPAPILSPPPPAEIPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVKHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: -