Basic Information

Insect: Cataglyphis niger
Gene Symbol: RREB1
Assembly: GCA_004329405.1
Location: SJPC01001271.1:20475-37932[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00014 0.094 15.1 1.7 1 23 41 63 41 63 0.97

2 15 7e-05 0.049 16.0 0.1 1 23 77 99 77 99 0.98

3 15 2.4e-05 0.016 17.4 4.2 1 21 105 125 105 128 0.95

4 15 0.0011 0.74 12.2 0.0 3 23 227 248 225 248 0.96

5 15 0.00065 0.45 12.9 3.2 2 23 254 276 254 276 0.96

6 15 0.34 2.4e+02 4.3 0.1 1 23 501 523 501 523 0.96

7 15 3.9e-05 0.027 16.8 0.2 1 23 532 554 532 554 0.98

8 15 0.0017 1.2 11.6 3.1 1 23 560 583 560 583 0.96

9 15 0.0015 1.1 11.7 2.2 3 23 952 973 950 973 0.96

10 15 4.3e-05 0.03 16.6 0.1 2 23 1242 1263 1241 1263 0.97

11 15 0.41 2.9e+02 4.1 10.4 1 23 1269 1292 1269 1292 0.96

12 15 0.0017 1.2 11.6 2.2 1 23 1335 1359 1335 1359 0.97

13 15 0.033 23 7.6 2.2 1 23 1440 1462 1440 1463 0.96

14 15 0.0064 4.4 9.8 0.4 3 23 1515 1535 1513 1535 0.93

15 15 0.0011 0.76 12.2 5.2 1 23 1541 1563 1541 1563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00014	0.094	15.1	1.7	1	23	41	63	41	63	0.97
2	15	7e-05	0.049	16.0	0.1	1	23	77	99	77	99	0.98
3	15	2.4e-05	0.016	17.4	4.2	1	21	105	125	105	128	0.95
4	15	0.0011	0.74	12.2	0.0	3	23	227	248	225	248	0.96
5	15	0.00065	0.45	12.9	3.2	2	23	254	276	254	276	0.96
6	15	0.34	2.4e+02	4.3	0.1	1	23	501	523	501	523	0.96
7	15	3.9e-05	0.027	16.8	0.2	1	23	532	554	532	554	0.98
8	15	0.0017	1.2	11.6	3.1	1	23	560	583	560	583	0.96
9	15	0.0015	1.1	11.7	2.2	3	23	952	973	950	973	0.96
10	15	4.3e-05	0.03	16.6	0.1	2	23	1242	1263	1241	1263	0.97
11	15	0.41	2.9e+02	4.1	10.4	1	23	1269	1292	1269	1292	0.96
12	15	0.0017	1.2	11.6	2.2	1	23	1335	1359	1335	1359	0.97
13	15	0.033	23	7.6	2.2	1	23	1440	1462	1440	1463	0.96
14	15	0.0064	4.4	9.8	0.4	3	23	1515	1535	1513	1535	0.93
15	15	0.0011	0.76	12.2	5.2	1	23	1541	1563	1541	1563	0.98

Sequence Information

Coding Sequence: ATGGAATATTCAAAGAAAGCGATTGAATCCGAGAATGGAATTGGTCAAGAGCAGGAGAACGAAACACAAATTGATGCCGCATCACCATCATCAAGcGTTGAGCTATCGGAGAATGGCGCGCATCCGTGCCCAATGTGCTCGTCGATATTTTCCAGTTCCCATGAACTGACGAATCATCTGCGCGGCCATAACTCACCTCGCAGCACAGACTGCAGCGGTGAGGAGGATTACAGCTGCGGGGTTTGCAACAAAGTTCTCAGCTCGGCAAGCTCGCTAGACCGACACGTTTTGGTACACTCGGGCGAACGGCCGTTCAAGTGCAAATACTGCGACATGTCGTTCACGACGAACGGCAATATGAACCGTCACGTGAGGTGCACCCATCGGATGGCATCGCCCAACAGTTGCACGGACTCCGAGGGCAGCAGCGGCTCAGAGAGACCGGTGACGACGAATCAGGATGAGTACAACAACAACGAGTTAGCAAGGCGTAACTCGCCGACCCTGATCGATGACCGGCAACAATCGTCATCGCCCGATAATCATCGCGCGAACAAGCGAAAATGCTTACAGGATGACGCTAGCGACACGGAGGAGCAGAAGAGGCACAAGACTCTTATGAATAATACGAGAATTATGATCAGATGCCAACCGGATGTGGAGCAGATGACATTCGGTTGTATGATTTGTGGCAAAGACTTCGTGAGCGGTGCGATGTTAGAGGCTCACATGGAACGCGTGCATTCGGAATCCCTAGCCACCTGCGAGATCTGCAACCTGACCTTCAAGAATCATCGGCAATTGAACCTCCATCGTTCTATGAGTCACTACAAGAAGAACACAGGCGGCAACAACAGCCGTCACAGCATCGTGGACGGTTTCGGCGATCTCACGTTCATGGACTTCTCAGCGGCGAAATTCGCGGAGATCGCTCGACGGATGTGCGAGCAGGAATTGCATCGACCAGCCTCTGGTGAGCTCAACAGATTCCAATGCATGAAGTGCCTGCATGCGTTTCCGTGCAGACAGGCGCAACTCGATCACGAAAAAGAATGCAAAGGTCCGTACAAAAATAAGAGGAATAGCAATGACAGtaacaataacaatgataACAATACCAATAACAATCTCGAAACGGAACTAGACGCTCCGTCCCCGCAGTCCAACGATCCGAAAACGATGCGCGAGATCTTTTTCGCCGTGTTAGATCTGCAAAATAAATCCTCGGCGCACGAAGCGAAGGAATCCAGGGAACTAAAAGAGACCAAGGAGTCAAAGGAGATGAAAGATCTAGCGGATATCCCGAGCATTTTATCCGTCAGTTTGAATGGACTGCCGACTTTTCCGCGATCAGATACCAGCACGCCCGAGAACAACATCAAGTTTAATCCGAATATCGGTTCTTCGGGTTCCTCAGGCACCTGCTCGTCCGAATATAACGAGGAGGAGGCGCAGGATGCTTTCACTGCGGAATTCCGAAAGATGAAACTCAAGGGCGAGTTTCCCTGCAGATTGTGCGCATCAGTATTCCCCAATCTGCGAGCGCTCAAAGGGCATAATCGCGCGCATATGAACGTGGAGCCAGGAATGCCGTATCCGTGCAATATGTGCCCCTTCACCAGTACTGACAAAGGAGCCTTGTTGAAGCACTTGAGATCGCATAATGGTGATCGACCTTTCGAATGCTCTCTCTGCAATTACGCGTTTACCACCAAGGCGAATTGCGAGAGGCATGTAAAGAATCGCCATGGAATGATTAGCAAGGAGGATGTTAAGAGCGCGCTGATCTATCATCCAAGCGAGGATTCGACGAACGAAAATGTCGAAAGGAGCTCGCCAAGAGGTATCAGGGACGACGTGCGAAAAACGCTCGTCTATTCGAACGAGCGTGAAGAAGTTTCTCAACAACAGATACATTATCCGCCTGTATCGATGGATTGTAATCCAGGACCTTCAAATGTTTGCGCTGAGATACTGATGAATTGTTACGAAAAGCCGGACATATTCCATAGATCAACGGCTCTGAATCTCGTGAAGAAAACCGCCGAGGAATCGAATGGGTCTCATGACTTGATCGTGAAGTCTAATTACTCGAAGATCGATGAGGACATTGAGTCAAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATGCACACCAAAGAATTCAAGCTAGTCCGATAAATCTGACCAAGTCCACGACAAACTCCATGTTAAGTTCGGGAGAGGACGCTCCTTTGGATTTATCCATGGACGTTGTTCTAGATCTTAGCAGGAAACGTAAAAGGGAGAATGAAAATTCTCAGGAGGAGAAACATTATAAGAACAATCAACAAGAATTGTATGCCGCGAATCCGGCACTGCTGCTGACTCAAGCTCTATTGAACAGAGCACGCGAAAATTCGACTACGTCGTTGGAGAATTTTTGCGCAAATACTTTCTATCGTAATCTCAACACGTTAACAGGCGCTTCTATAATACCGCCGTATTTTCTCAATCCTCACATGTTCGGTCAGGAATTGACCGAGAAAAGCAAATTGCAGAAAGAGCTAGTCAGAGGTTTGCAGTTGACCGGCGGCAACACCTTTCCAGTGGATCCATCACTGCCCAGCACTAGTTACGCGGCAGCATACGCACAGGCGCGGGATATCCCGCAAACCTCGAGCGAACACAATGCTTACACGAATTTGATGAACGCGCAGATAGCCAACCAGGTCGCACCGAGCCGCGAGAAAGTGGATGGCATTTCATCCAACGATCCTGTGAAAATGGTACTCAAAAACGGCGTGCTTATACCCAAACAAAAGCAGCGCAGATACCGCACCGAAAGACCGTTTGGCTGCGAGCACTGCACGGCAAGATTCACACTGCGAAGCAACATGGAACGACACATTAAGCAACAGCATCCTCAGTATTGGAGCCAAAGACCCCGCGGCGGACATTCAACTAGAGGCAGACCGCCCGCGAATCATCCGAATACAATGCAGAATTCCGCCTCGTCAACCTCGCAAGTAATTCAACCATATCCGAATATTCTTCAAAACGTCGACTCGTCCATGGTTACATCGGACTATAATACGCATCCCATTTCAGATCAAGTAAAGTATGCCATTCTAGCACAACAATTAAAAGCCGATAAAATAGATGACAATGATTCCGAGGACGAAATGGTAATAGATGAAGAATCAGGCGACAGGGATGCACAGGAGCCGCAAGCTCAGCACGAGCGTAGCACAAGCTTGCTGAGAGATCAGTTAGAGAGTAACGAAGGTGGTAAAGATATCGTCGTGAAAAAGGAACTGATTGACCCCGCGGAAGAGACCTTGGAAGAATCTCACGGTGAACAAACTGTACGAAACGGCATAGACAGGATCAATGCTGATGAACCTGCGGCTGCTGAAAATAAGTCGGTACACAGCAAAGAGACGATCAAGACGGAATCCTCTGGAAAAGAGCAAGGTAAACTCGAGGACGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTATTGGACAATGCGTCTCAGCAGTATCAGGAATTCAAACCGCAATACTTGAGCGACGAAGAAGGCCCTGTTGCCTCGACCAGTGGCAACAATTCCGGTAGCGAAAAGTCCGACTCGAATTCTTTAAACTCCGGAAATGATTCTTcgtcaaataaaaagaaaaagaagaagaagaaatccgCGTATTCGATGGCACCGAATCGAGTCCCATGCCCTTATTGCCCGCGTCAGTTCCCTTGGAGCTCATCGCTGAGACGGCATATCCTCACTCATACCGGCCAGAAGCCCTTTCAGTGCACACACTGCTCGCATTACTTCACCACAAAGTCCAATTGCGACCGCCACTTGTTGAGAAAACACAAGGCAAAGGCGAATAAAATGCGCCGTGTTAGAAACTCCTCCTCACCAGAGGTACAGGTGGTTGccagcagtagcagcagtagcagtaaCAATATGTTCTCCATGAGAAACGTGCCCGAGAGACCATACAAGTGCAATCAGTGCCCAAGCTCGACCTTCTCTACATTAGGCAATCTGAAAAAGCACCGATCGACCAAGCATCGTAAGACTACGTCCCGGTCGGAGTCCAGCGATCAACAGAATAGTCCACCGCAGTGCTCCAACACGCAGAACGATCATAGTGATTACGAGAGCCGATCGTCGAGCGCGTCCGAGAACATGGAGAATTCCGCTAGCGCAGCCGTGAAAGCGAATTCCAATACAACGTCTCTGACATCGATGAATGAGATGACCAGATCGCGCAAATCGCCAAGATCGTCGCCTGGTCCCAGCGATGCTCCCTTCAAATGTTACTTGTGCGACAGCGGTTTTTCCGAGCGTCAAGATAATTTGAATCACATCAAAATGCATCATAAGCGCTCATACGATATGCTGAAGGCCAAGGGCGCCCTCGATATGGCATCTATGAATATAGACGCGAATGAAGATCAAATGGCACAGCAACATCCTAGTGACGGCGAAGAGAAGAGGGGTCGATTTCCTGATTACAGTAATAGaaagGTTATATGTGCTTTCTGTATGAGACGGTTCTGGTCCGCGGAAGATCTCCGGCGTCACATGAGGACCCACACGGGAGAAAGACCCTTCGAATGTGACATCTGCACTAGGAAGTTCACGCTGAAACATAGCATGCTGCGCCATCGTAAAAAACACGAGTCTGTGGATTCTGCTATGTATATAGGTAACAGCGGTGATGAGGACAACTCGCCTGCACAGCCACCGACGATAACGCCTAGAAGTCAACAACATTCGCCAATTTCTACAAATACTAGCAGGCCTCGTACCCAGGACAGAATCTCTCTGCCGACCGTTGCGGCGGTCGCAACAGCGGACGCGGCACCTTGTGCGCTTATGCGATACAATCACTATGACAACATGGCTACTCTCACCGGCAGAATGGCAAATGACAACTCGCAGAACGCTGCGCCTGCTGCTCTGCCTTCCCCGCCACCTCCGGCGGAGGTGCCCAGCGAGAGCGGGGATAACGACTTGATTTCCAATCTGCTGGGCATTCGCGAGAAAGGTTTACTTGATAAGGTTCTTCTGAGCTCAGCGGACGATGCAGCCAAGTTGTTGGGTGTCAATCATAGCGAGTGA
Protein Sequence: MEYSKKAIESENGIGQEQENETQIDAASPSSSVELSENGAHPCPMCSSIFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRMASPNSCTDSEGSSGSERPVTTNQDEYNNNELARRNSPTLIDDRQQSSSPDNHRANKRKCLQDDASDTEEQKRHKTLMNNTRIMIRCQPDVEQMTFGCMICGKDFVSGAMLEAHMERVHSESLATCEICNLTFKNHRQLNLHRSMSHYKKNTGGNNSRHSIVDGFGDLTFMDFSAAKFAEIARRMCEQELHRPASGELNRFQCMKCLHAFPCRQAQLDHEKECKGPYKNKRNSNDSNNNNDNNTNNNLETELDAPSPQSNDPKTMREIFFAVLDLQNKSSAHEAKESRELKETKESKEMKDLADIPSILSVSLNGLPTFPRSDTSTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCASVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKSALIYHPSEDSTNENVERSSPRGIRDDVRKTLVYSNEREEVSQQQIHYPPVSMDCNPGPSNVCAEILMNCYEKPDIFHRSTALNLVKKTAEESNGSHDLIVKSNYSKIDEDIESRSSDGSVSLVSDTKTDAHQRIQASPINLTKSTTNSMLSSGEDAPLDLSMDVVLDLSRKRKRENENSQEEKHYKNNQQELYAANPALLLTQALLNRARENSTTSLENFCANTFYRNLNTLTGASIIPPYFLNPHMFGQELTEKSKLQKELVRGLQLTGGNTFPVDPSLPSTSYAAAYAQARDIPQTSSEHNAYTNLMNAQIANQVAPSREKVDGISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHPNTMQNSASSTSQVIQPYPNILQNVDSSMVTSDYNTHPISDQVKYAILAQQLKADKIDDNDSEDEMVIDEESGDRDAQEPQAQHERSTSLLRDQLESNEGGKDIVVKKELIDPAEETLEESHGEQTVRNGIDRINADEPAAAENKSVHSKETIKTESSGKEQGKLEDGAADLASVSKLLDNASQQYQEFKPQYLSDEEGPVASTSGNNSGSEKSDSNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPYCPRQFPWSSSLRRHILTHTGQKPFQCTHCSHYFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPEVQVVASSSSSSSNNMFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKTTSRSESSDQQNSPPQCSNTQNDHSDYESRSSSASENMENSASAAVKANSNTTSLTSMNEMTRSRKSPRSSPGPSDAPFKCYLCDSGFSERQDNLNHIKMHHKRSYDMLKAKGALDMASMNIDANEDQMAQQHPSDGEEKRGRFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDNSQNAAPAALPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: -