Basic Information

Insect: Atta texana
Gene Symbol: RREB1
Assembly: GCA_004480015.1
Location: QEPB01034197.1:3691-10726[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8e-05 0.0059 17.5 1.2 1 23 108 130 108 130 0.97

2 14 7.9e-05 0.0098 16.8 0.1 1 23 144 166 144 166 0.98

3 14 0.00012 0.015 16.3 5.5 1 21 172 192 172 195 0.95

4 14 1.2 1.5e+02 3.6 0.1 3 23 293 314 291 314 0.95

5 14 0.0052 0.64 11.1 3.7 2 23 320 342 320 342 0.96

6 14 0.16 20 6.4 0.2 1 23 569 591 569 591 0.96

7 14 1.8e-05 0.0022 18.8 0.2 1 23 600 622 600 622 0.98

8 14 0.0038 0.47 11.5 3.1 1 23 628 651 628 651 0.96

9 14 0.00043 0.053 14.5 3.1 1 23 1021 1044 1021 1044 0.97

10 14 0.00021 0.026 15.5 0.2 2 23 1310 1331 1309 1331 0.97

11 14 0.039 4.9 8.3 3.2 1 23 1404 1428 1404 1428 0.96

12 14 5.9 7.3e+02 1.5 1.6 1 23 1508 1531 1508 1531 0.90

13 14 0.0027 0.34 12.0 0.5 3 23 1585 1605 1583 1605 0.96

14 14 0.0024 0.3 12.1 5.2 1 23 1611 1633 1611 1633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8e-05	0.0059	17.5	1.2	1	23	108	130	108	130	0.97
2	14	7.9e-05	0.0098	16.8	0.1	1	23	144	166	144	166	0.98
3	14	0.00012	0.015	16.3	5.5	1	21	172	192	172	195	0.95
4	14	1.2	1.5e+02	3.6	0.1	3	23	293	314	291	314	0.95
5	14	0.0052	0.64	11.1	3.7	2	23	320	342	320	342	0.96
6	14	0.16	20	6.4	0.2	1	23	569	591	569	591	0.96
7	14	1.8e-05	0.0022	18.8	0.2	1	23	600	622	600	622	0.98
8	14	0.0038	0.47	11.5	3.1	1	23	628	651	628	651	0.96
9	14	0.00043	0.053	14.5	3.1	1	23	1021	1044	1021	1044	0.97
10	14	0.00021	0.026	15.5	0.2	2	23	1310	1331	1309	1331	0.97
11	14	0.039	4.9	8.3	3.2	1	23	1404	1428	1404	1428	0.96
12	14	5.9	7.3e+02	1.5	1.6	1	23	1508	1531	1508	1531	0.90
13	14	0.0027	0.34	12.0	0.5	3	23	1585	1605	1583	1605	0.96
14	14	0.0024	0.3	12.1	5.2	1	23	1611	1633	1611	1633	0.98

Sequence Information

Coding Sequence: ATGCGGTTAGAACGTCGGACGAGAACGTTGATAAGTATTATTGTCTCGGCTCCATCTGCGGTTCGGTCTGGGTATCAGCTTCCGGAATACTTAGTCAGATTTGTGTCCTGTCCTGTCGCTGACACAGTTCCTTACCCAGTACGGTTAAACCGGAGACGTAGCACCGGCGGATCCGGCGGTGGCTCCTGTTTATCCGCGGTTTTAAGGCCGGTGCGCATCATGACTGGACCCGAGAATGGATCCAGCCAGGAACAGGAAAACGAAACGCAAATTGATGCTGCATCACCATCATCaagtGTTGAGCTGTCGGAGAATGGCGCGCATCCATGCCCGACGTGCCCGTCGGTATTTTCCAGTTCCCACGAACTGACGAATCATCTGCGTGGCCACAATTCCCCTCGCAGCACAGACTGCAGCGGCGAAGAGGACTACAGTTGTAGCGTATGTAATAAGGTACTTAGTTCGGCGAGTTCGCTGGACCGGCATGTGCTGGTGCACTCAGGCGAACGACCGTTCAAGTGCAAACATTGCGATATGTCGTTCACGACGAATGGCAACATGAACCGGCACGTGAGATGTACACATCGGATGGTGTCGCCGAACAGTTGCACGGACTCTGAAGGTAGCAGCAGTTCGGAAAGACCGGCGGGGACAAGTCAAGATGAGTACAACAACAATGAGATAACTAGGCACAATTCACCGGACTTGATCGATGATCGACAACAACCGTCGCCCAGCAACAATCGCGGAAACAAGCGAAAATGCGCGGACGAAGACATCAGTGACATGGAGGATCAGAGGAGACATAAGATTCTCTTGAACAACACCAAGATGTCGATCAGGTGTAGGCCAGAGGATGAGCAAAAAACTTTTGGTTGTTTGCTCTGCAGTCAGGATTTCGCAAGCAGTGCGATTTTGGAGTCTCATATGGAGCGCGTGCATCCGGGTTCTCCAGCTACATGCGAGACCTGCAACCAGTCGTTCAAGAATCATCGTGCGTTAAACCTTCATCGTTCAATGAGACACTACAAGAAGAACTCGGAAGGCAACAACAGCCGTAGCCTGCGTAACACTGTGGACGGTTTCAGGGATCTGACGTTCATTGATTTTTCGTCCATCAAATTTCCAACGATCGCTCGGGCGATGTGCGAGCGTGAACTGCATCGACCGGCCTCTGGCGAGGCCAATAGGTTCCAATGTATGAAGTGCTTGCACGCGTTTCCCTGCAGACAGGCCCAATTGGCCCATGAAAAAGAATGCAAGGGTCCCTACAAGAACAAAAGAAACAGCAAcgataacaacaataataatgatattagtACTAACAACAATCTCGAGACAGAGCTGGACGATCCAAGCCCACAGCCCGATGATCCTAAGACAAAGCGCGAGATATTTTTCGCTGTGTTGGATCTACAGAATAAGTCTTTGGCGCACGAGATGAAGGAGCCACGAGAACCAAGCGAAATCAGGGAATCGAAAGAGACTAAAGATTTAGCAGATATCCCGAGCATCTTATCTGTTAGTCTCAATGGACTGCAGACCTTTCCTCGATCGGATGCGAGCACGCccgaaaataatatcaaattcaatCCAAATATTGGCTCTTCAGGTTCCTCAGGCACCTGTTCGTCCGAATACAATGAAGAAGAAGCGCAGGATGCCTTCACCGCGGAATTCCGGAAGATGAAACTGAAGGGCGAGTTCCCATGTAGACTATGCACATCTGTATTTCCCAATTTGCGAGCATTGAAGGGACACAATCGTGCGCATATGAACGTGGAACCGGGTATGTCATATCCGTGCAATATGTGTCCTTATAGCAGTACTGACAAAGGAGCTCTGATGAAGCATCTGAGATCGCATAACGGTGACAGGCCGTTCGAATGCTCTCTCTGCAATTATGCATTCACCACCAAAGCAAATTGCGAGAGGCACGTGAAGAATCGTCATGGGATGATTAGCAAGGAAGACGTTAAGAATGCATTAATCTATCATCCGAATGAAGATTCGACAAACGACAACATCGAAAGAAGTTCGCCCAGAGTCATCAGAGAAGATGTGCGGAAGACACTTATTTATCCGAATGAACGCGAAGAGACTCCTCAACAACAAATACACTATCCGTCTATAGCGATGGATTGTAATCCTGGACCATCGAATATTCGCCCCGAGATATTGATGAATCGCTATGATAAGTCGGATGCGTTCACCAGAGTGAAGATGCAGGCTCTTAATCTTGTCAAAAGAAACGCCGACGAAGCAAACGTGTCTCACGATTTGCTCGTGAAATCTAATTACTCGAAGATCGATGACGATATCGAGTCGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCTGGGTTGAGCTCGGGGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAGaaagcgaaagagagaaaatgagGATTGCGGTTCACAGGAGGAGAAACGGTTTAAGAGCAATCAACAGGAATTGTACGCCACGAATCCAGCATTGCTGTTGACTCAAGCTTTGCTGAACAGAGCACGTGAGAACTCACCGACGACGTCACTGGAGACTCTTTATGCGAATACTATTTATCGTAATTTCGGTACGTTAACCGGTGCCGGCATGATACCGCCATACTTCCTCAGTCCTCACATGTTCGGCCAGGAATTAACGAAGGGCAGACTACAGAAGGAACTGGTTAGAGGTTTGCAGCTCACTGGTGGCGGTACACTTTCAGTGGATCCGTCACTGCCCAGCACCAGTTACGCAGCGTATCCGCAAACAAGGGACACTCCGCAACCCTCGAGTGAGCAAAATGCTTATGCAAACTTGATGAATACGCAGATTACTAATCAGACCGCGCCGAGCCGTGAAAAAACAGATGTTATCCCATCGAATGATCCTGTAAAGATGGTACTCAAGAACGGAGTATTAATCCCCAAGCAAAAGCAACGTAGATATCGTACCGAGAGACCTTTTACTTGTGAGCATTGCACGGCGAGATTCACGCTTAGGAGTAATATGGAACGACATATCAAGCAACAGCATCCACAGTATTGGAGCCAAAGACCTCGCGGTGGACATTCGACTAGAGGCCGACCGCCCGCAAGTCATCCAAGTATGGTACAGACTACTAGTCCATCGTCCTCGCAAATAGTTCAACCATATTCGAGCATTCTTTCGAACGTCGACACTCCGGGGATCACATCGGACTACGGCACACACCCTATCTCGGACCAAGTAAAATACGCGATTTTAGCGCAACAACTGAAGGCCAATAAAATAGATGACAATGATTCAGACAACGAAATGGTGATAGACGAGGAGCCGGTTGATCGGGACGTTCAGGAATCGCAAGTTCAACACGAGTCTAGTATGAGTTTGTTGAGAGATCAGTTGGAAAACAGCGATggtgttaaaaatattctcgtAAAAACAGAAACGGCCGAGTCCGCGGAGGAAACCTCGGAAGAAACCCACGGTGAACAGATCACACGGAATAACATCGACGCTGATCTGGAAGAATCCGCAGCTGAAAGCAAATCAATACGCGCTGAAGAAATGATACAATCCACTGAAAAGGAACAAGGCAAACTTGAAGACGGAGCGCCCGACCTCGCTAGTGTCTCAAAGCTTTTAGACAATGCGTCTCAGCAATATCAACAATTTCAACCGCAATATTTGAGTGACGAGGAGGGCCCCGTTGCGTCCACCAGCGGTAATAACTCCGGCAGCGAGAAGTCCGATTCTATGAATTCCTTGAACTCCGGAAATGATTCCTCGCCaaataagaagaagaaaaagaagaagaagtccGCATACTCAATGGCACCAAATCGCGTTTCATGTCCGTATTGTGACCGTCAATTTCCATGGACTTCGTCGCTGAGACGACACATTCTCACCCACACCGGCCAGAAGCCGTATCAGTGTATCCACTGTTCGCATCATTTTACTACCAAGTCCAACTGCGACCGTCATTTGTTGAGAAAACACAAGGCGAAAGCGAACAAAATGCGCCGTGTCAGGAATTCATCCTCGCCGGACGTCCAAGTGGTCGCTAGCAGCAGCAGTAGCAGCAACGGCAGCAACACATTCTCCATGAGGAATGTGCCCGAGAGGCCGTTCAAATGTCATCAGTGTCCAAGCTCGACGTTCGCCACGTTGGGCAATCTGAAGAAGCATCGGTCGAGTAAGCACCGCAAGAATGCGTCTAGATCGGAATCTAGTGATCAACAAAACAGTCCGCCTCAATGCCCCGCGCAAAATGACCAAAGCGATTACGAGAGCCGTTCATCGAGCATGTCCGACAACATGGAGAACACGTCGTCTGCCGTCGCAGTCGCGAAACCGACTTCCACCGCGTCACCCTCGATAAATGACGCCACCAGATCGCGCAAATCACCAAGATTATCACCGAGTCCCGGTGATGTACCCTTCAAATGTTATCTGTGCGACAGCGGTTTCTCGGAACGACAGGACTGCCTGGACCACATCAAAGCCAGTCATAGTCGTTCATACGATATGTTGAAGGCCAAAGGGGCTCTCGACATGGCGTCCATGAATATAGATGCAAACGAAGATCAGATGTTAGCATCGCACCAACATCTCAGTGatggagaagaaaagaaaggcCGTTTTCCTGATTACAGCAACAGAAAGGTTATGTGCGCTTTCTGCTTGAGACGATTTTGGTCCGCGGAAGATCTTCGGCGTCACATGAGGACCCACACGGGTGAGAGGCCCTTCGAATGCGACATATGCACCAGGAAATTCACGCTCAAACACAGCATGCTACGCCACCGTAAGAAACATGAGTCAGTGGATTCCGCCATGTATATAGCTAACAGCGGCGACGAGGACAATTCGCCTGCGCAACCACCAACGATAACACCTAGGAGTCAACAGCACTCGCCAATCTCCACTAACACCAGCAGGCCCCGCACACAGGATAGAATCTCTTTGCCGACCGTCGCGGCGGTAGCAACGGCGGATGCGGCACCCTGTGCCCTGATGCGATACAATCACTATGATAACATGGCCACTCTCACCGGTAGAATGGCGAACGACGGTCCCCAAGGTGCCGCATCCGCTCCGCTGTCTTCTCCGCCGCCTCCCGCGGAGGTACCCAGTGAGAGCGGAGACAACGACCTTATCTCTAATTTGCTGGGTATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTAAGCTCGGCGGACGACGCGGCGAAGTTGTTGGGGGTGAACCATAATGAGTAA
Protein Sequence: MRLERRTRTLISIIVSAPSAVRSGYQLPEYLVRFVSCPVADTVPYPVRLNRRRSTGGSGGGSCLSAVLRPVRIMTGPENGSSQEQENETQIDAASPSSSVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCSVCNKVLSSASSLDRHVLVHSGERPFKCKHCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSSSERPAGTSQDEYNNNEITRHNSPDLIDDRQQPSPSNNRGNKRKCADEDISDMEDQRRHKILLNNTKMSIRCRPEDEQKTFGCLLCSQDFASSAILESHMERVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNSEGNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETELDDPSPQPDDPKTKREIFFAVLDLQNKSLAHEMKEPREPSEIRESKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMSYPCNMCPYSSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPNEDSTNDNIERSSPRVIREDVRKTLIYPNEREETPQQQIHYPSIAMDCNPGPSNIRPEILMNRYDKSDAFTRVKMQALNLVKRNADEANVSHDLLVKSNYSKIDDDIESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGGEDGPLDLSMDVLDLSRKRKRENEDCGSQEEKRFKSNQQELYATNPALLLTQALLNRARENSPTTSLETLYANTIYRNFGTLTGAGMIPPYFLSPHMFGQELTKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYAAYPQTRDTPQPSSEQNAYANLMNTQITNQTAPSREKTDVIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPSMVQTTSPSSSQIVQPYSSILSNVDTPGITSDYGTHPISDQVKYAILAQQLKANKIDDNDSDNEMVIDEEPVDRDVQESQVQHESSMSLLRDQLENSDGVKNILVKTETAESAEETSEETHGEQITRNNIDADLEESAAESKSIRAEEMIQSTEKEQGKLEDGAPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSPNKKKKKKKKSAYSMAPNRVSCPYCDRQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKNASRSESSDQQNSPPQCPAQNDQSDYESRSSSMSDNMENTSSAVAVAKPTSTASPSINDATRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKASHSRSYDMLKAKGALDMASMNIDANEDQMLASHQHLSDGEEKKGRFPDYSNRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIANSGDEDNSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGPQGAASAPLSSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -