Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: RREB1_1
Assembly: GCA_035220575.1
Location: JASTWL010002076.1:1437410-1446751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.4e-05 0.011 17.5 1.2 1 23 42 64 42 64 0.97

2 14 0.00021 0.034 15.9 0.1 1 23 78 100 78 100 0.98

3 14 0.00024 0.039 15.8 4.1 1 21 106 126 106 129 0.95

4 14 0.0091 1.5 10.8 0.0 3 23 226 247 224 247 0.96

5 14 0.0045 0.74 11.7 3.4 2 23 253 275 253 275 0.96

6 14 0.21 36 6.5 0.2 1 23 502 524 502 524 0.96

7 14 0.00039 0.066 15.1 0.1 1 23 533 555 533 555 0.98

8 14 0.0051 0.85 11.6 3.1 1 23 561 584 561 584 0.96

9 14 0.00058 0.096 14.5 3.1 1 23 955 978 955 978 0.97

10 14 0.00085 0.14 14.0 0.1 2 23 1249 1270 1248 1270 0.97

11 14 0.053 8.8 8.4 3.2 1 23 1343 1367 1343 1367 0.96

12 14 3.7 6.2e+02 2.6 2.1 1 23 1447 1470 1447 1470 0.95

13 14 0.014 2.3 10.2 0.4 2 23 1523 1544 1522 1544 0.94

14 14 0.0032 0.53 12.2 5.2 1 23 1550 1572 1550 1572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.4e-05	0.011	17.5	1.2	1	23	42	64	42	64	0.97
2	14	0.00021	0.034	15.9	0.1	1	23	78	100	78	100	0.98
3	14	0.00024	0.039	15.8	4.1	1	21	106	126	106	129	0.95
4	14	0.0091	1.5	10.8	0.0	3	23	226	247	224	247	0.96
5	14	0.0045	0.74	11.7	3.4	2	23	253	275	253	275	0.96
6	14	0.21	36	6.5	0.2	1	23	502	524	502	524	0.96
7	14	0.00039	0.066	15.1	0.1	1	23	533	555	533	555	0.98
8	14	0.0051	0.85	11.6	3.1	1	23	561	584	561	584	0.96
9	14	0.00058	0.096	14.5	3.1	1	23	955	978	955	978	0.97
10	14	0.00085	0.14	14.0	0.1	2	23	1249	1270	1248	1270	0.97
11	14	0.053	8.8	8.4	3.2	1	23	1343	1367	1343	1367	0.96
12	14	3.7	6.2e+02	2.6	2.1	1	23	1447	1470	1447	1470	0.95
13	14	0.014	2.3	10.2	0.4	2	23	1523	1544	1522	1544	0.94
14	14	0.0032	0.53	12.2	5.2	1	23	1550	1572	1550	1572	0.98

Sequence Information

Coding Sequence: ATGGACGGCCGTCGAACAGTGACTGGACCCGAGAATGGACCCGATCTGCAGGAACAGGAAAACGAAACGCAAATTGATGCTGCATCACCATCGTCAAGTGTTGAGCTGTCGGAAAACGGCGCGCATCCATGCCCGACGTGTCCGTCGGTGTTTTCCAGTTCCCACGAACTGACGAATCATCTACGCGGCCACAATTCACCTCGCAGCACGGACTGCAGCGGCGAGGAGGACTACAGCTGCGGCGTATGCAATAAAGTGCTCAGCTCGGCGAGCTCGCTGGACCGGCACGTGCTGGTACATTCCGGCGAGCGGCCGTTCAAGTGCAAGTACTGCGAGATGTCGTTTACGACGAACGGCAACATGAACCGGCACGTGAGGTGCACTCATCGGATAGTGTCGCCGAACAGCTGCACGGATTCCGAGGGCAGCAGCGGCTCGGAAAGGCCGGCGGCGACGAGCCAGGACGAGTACAATAACAACGAGATAGCCAGGCGCAACTCGCCAGAGCTGATCGACGATCGACAGCAACCGTCGCCCAGCAACCGCGCGAACAAGCGAAAATGCCCGGACGAGGACGTCAGCGACATGGAAGATCAGAGGAGGCACAAGATTCTCCTGAACAACACCAAGATGACGATTAGGTGTCGACCGGAGGATGAGCAGAAGGCCTTCGGCTGTCCGATCTGCGGTCAGGACTTCGCGAGCAGCGCGATTCTCGAGTCACATATGGAGCGCGTGCATCCAGGCTCCCCGGCCACGTGCGAGACCTGCAATCAGTCGTTCAAGAATCATCGTGCGCTGAATCTCCATCGTTTGATGAGGCACTACAAGAAGAATCCGGAGGGCAACAACAGTCGTAGCAAAAACAACACCGTGGACGGTTTCAGGGATCTGACGTTCATCGACTTCTCGTCCATCAAGTTTCCGACGATCGCTCGGGCGATGTGCGAACGTGAGCTGCACCGGCCGGCCTCCGGCGAGGCCAACAGGTTTCAGTGTATGAAGTGCCTGCACGCGTTCCCCTGCAGGCAAGCCCAGCAGGCCCACGAGAAGGAGTGCAAAGGCCCCTACAAGAACAAGAGAAACAGCAACGACAACAACAATAACAACGACATCAGTACCAACAACAATCTCGAAACAGAGCGTGATGATCCGAGTCCGCAGCCCGACGACCCCAAGACGAAGCGCGAGATTTTCTTCGCCGTGCTGGATCTGCAGAACAAGTCCTTGGCGCATGAAATGAAGGATCCGCGGGAACCGAGCGAGATCAGGGAGTTGAAAGAGATCAAGGATCTAGCGGATATCCCGAGCATCCTGTCTGTCAGTTTGAATGGACTGCAGACCTTTCCTCGGTCGGATGCAAGCACGCCCGAGAACAACATCAAGTTCAATCCGAACGTTGGCTCTTCAGGCTCGTCGGGCACCTGTTCGTCCGAGTTCAACGAAGAGGAGGCGCAGGACGCCTTCACTGCGGAATTCCGGAAAATGAAGCTGAAGGGCGAGTTCCCATGCAGATTATGTACATCCGTATTTCCCAATCTGCGAGCGTTGAAGGGACACAATCGCGCGCATATGAACGTGGAACCGGGTATGCCGTATCCGTGCAATATGTGTCCGTTCACGATCGCCGACAAGGGGGCCCTGATGAAGCATCTAAGATCACACAACGGCGACCGTCCGTTTGAGTGCTCTCTCTGCAATTATGCGTTCACTACCAAAGCAAATTGTGAGAGGCACGTGAAGAATCGTCACGGGATGATCAGCAAGGAGGACGTTAAGAACGCACTTATCTATCATCCGAGCGAGGATTCGACAAACGACAACATCGAAAGAAGCTCGCCTAGAGTCATCAGGGAAGACGTGCGGAAGACGCTTATTTATCCGAATGAACGCGAGGAGACTCCCCAACAGCAACAACAGATACATTATCCGCCTATAGCGATGGATTGTAATCCTGGACCGTCGAACATCCGCGCCGAGATGCTGATGACTCACTACGAGAAGTCAGACACGTTCGCCAGAGTGAAGATGCAGGCTCTCAATCTCGTAAAAAGAAGCGCCGACGAAGCAAATTTGTCTCACGATCTAATCGTGAAATCTAATTATTCGAAGATTGACGACGACGTCGAGTCGGGCTCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCCGGGTTGAGCTCGGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGTAGGAAGcggaagagagagaacgaggaTTCCAGCTTGCAGGAGGAGAAGCGGTTTAAGAATAATCAGCAGGAATTGTATGCCACAAACCCAGCGCTGTTGCTGACGCAAGCCCTGTTGAACAGAGCACGCGAGAGCTCACCGACAACATCGCTGGAGACTCTTTATGCGAATACTATCTATCGCAATTTTGGCACATTAACTAGTGGTGTAATACCCCCGTACTTCCTCACTCCTCACATGTTCAGCCAGGAATTGGCCGCGAAGGGCAGGCTGCAGAAGGAGCTGGTTCGAGGTTTGCAGTTAACCGGCGGTGGCACACTTTCGGTTGATCCGTCACTGCCCAGCACCAGTTACACGGCATATTCGCAGTCGAGGGACACCCTGCAAACCTCGAGCGAGCAGACTGCCTACGCGAATCTGATGAGCGCGCAGATGACCAACCAGGTCGCGCCGAGCCGCGAGAAAACAGACGGGATCCCGTCGAATGATCCCGTGAAGATGGTACTCAAGAACGGAGTGCTGATCCCCAAGCAGAAGCAGCGCAGATACCGAACCGAGAGACCTTTCACCTGTGAGCACTGCACGGCGAGGTTCACGCTGAGGAGCAACATGGAACGGCACATCAAGCAGCAACATCCGCAGTATTGGAGCCAAAGACCCCGTGGCGGACATTCGACCAGAGGCAGACCACCCGCGAGTCATCCGACTATGGTACCAAATACTGGTCCGTCAACCTCGCAGGTGGCTCAATCGTATTCGAGCATTCTACCGAACGTCGACACGCCGGTGGTCACGTCGACGGACTACGGCACGCATCCCATCTCGGATCAAGTAAAGTACGCGATTCTGGCGCAACAGCTGAAGGTCAATAAAATGGATGACAATGACTCGGACGACGAGATGGTGATAGACGAAGAGTCGGCCGATCGGGACGCTCAGGAGTCGCAAGCTCAGCGTGAGCCTAGCACGAGTTTGCTGAGAGATCAGTTGGAAAACAATGAAAATGTCAAAGATATCGTCATAAAGACAGAAGCGGCTGAGCCCGCGGAGGAAACCTCGGAGGAGACCCCCGGCGAGCAGACTGCGCGAAGTAACGTCGACAGCGCCAATCCGGAGGAATCCGCCGCTTCTGAAAGCAAATCAATACGCGCTGAAGAAACGACCATGACCGAATCCGCCGAGAGGGAGCAAGGTAAACTCGAAGACGGAACGCCCGATCTCGCGAGTGTCTCGAAGCTTTTGGACAACGCGTCACAGCAATACCAGCAATTCCAGCCGCAATATCTGAGCGACGAGGAGGGCCCCGTTGCGTCGACCAGCGGCAACAATTCCGGCAGCGAGAAGTCCGACTCCATGAACTCCTTGAACTCTGGGAACGATTCCTCGtcgaacaagaagaagaaaaagaagaagaagtctGCATATTCGATGGCGCCGAATCGCGTCGTGTGTCCGTACTGCGAGCGCCAGTTCCCGTGGACCTCGTCGCTGAGACGACACATCCTCACCCACACCGGCCAGAAGCCGTATCAGTGCATCCACTGCTCGCATCACTTCACCACCAAGTCCAACTGCGATCGCCACCTGCTGAGGAAGCACAAGGCGAAGGCGAACAAGATGCGCCGTGCCAGGAACTCGTCTTCGCCTGACGTTCAGGTGGTcgccagcagcagcagcagtagcaacGGCAGCAACACGTTCTCCATGAGGAACGTGCCCGAGAGGCCGTTTAAATGCCATCAGTGCCCGAGCTCGACATTCGCCACGTTGGGCAATCTGAAGAAGCACCGGTCGAGCAAGCACCGCAAGGTCGCGTCCAGATCAGAGTCCAGCGATCAGCAGAACAGCCCGCCGCAGTGCGCCGCGCAGAACGACCAGAGCGATTACGAGAGTCGCTCATCAAGCACGTCCGACAACATGGAGAACACCCCGTCCGTCGTCGCGGCCGCGAAGCCGACCTCTAACGCGTCCCCCTCGATAAACGACGCCACCAGGTCGCGCAAATCACCAAGATTATCGCCGAGTCCCGGCGACGTACCCTTCAAATGTTACCTGTGCGACAGCGGCTTCTCGGAACGCCAGGACTGCTTGGACCACATCAAGATGAATCACAAGCGCTCGTACGAGATGCTGAAGGCCAAGGGCGCCCTCGACATGGCGTCCATGAACATAGACGCGACCGAGGATCATATATTAGCGTCGCAGCAGCATCCCAGCGAcggagaagagaagaaaggcCGTTTTCCCGACTACAGCAACAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAGGATCTCCGGCGTCACATGAGGACTCATACGGGCGAGAGGCCCTTCGAATGTGACATCTGCACCAGGAAGTTCACGCTCAAGCACAGCATGCTACGTCACCGTAAGAAGCATGAGTCGGTGGACTCCGCCATGTACATAGGCAACAGCGGCGACGAGGAGAACTCGCCCGCGCAGCCGCCGACGATAACCCCCAGGAGTCAGCAGCACTCGCCGATCTCCACCAACACCAGCAGGCCCCGCACCCAGGACAGAATCTCCCTGCCGACCGTCGCGGCGGTCGCAACGGCGGACGCGGCGCCCTGCGCCCTGATGCGGTATAATCACTACGACAACATGGCCACTCTCAGCGGAAGAATGGCAAACGACAGTCCCCAGGGCGCCGCTCCAGCCTCCTTGTCTTCTCCCCCGCCTCCCGCGGAAGTACCCAGCGAAAGCGGGGACAACGACCTGATCTCCAATTTGCTGGGGATACGCGACAAAGGTTTGCTCGACAAGGTTCTCTTGAGCTCGGCGGACGACGCGGCGAAGTTGTTGGGGGTCAACCACAGCGAGTGA
Protein Sequence: MDGRRTVTGPENGPDLQEQENETQIDAASPSSSVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMSFTTNGNMNRHVRCTHRIVSPNSCTDSEGSSGSERPAATSQDEYNNNEIARRNSPELIDDRQQPSPSNRANKRKCPDEDVSDMEDQRRHKILLNNTKMTIRCRPEDEQKAFGCPICGQDFASSAILESHMERVHPGSPATCETCNQSFKNHRALNLHRLMRHYKKNPEGNNSRSKNNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQQAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETERDDPSPQPDDPKTKREIFFAVLDLQNKSLAHEMKDPREPSEIRELKEIKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNVGSSGSSGTCSSEFNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTIADKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNDNIERSSPRVIREDVRKTLIYPNEREETPQQQQQIHYPPIAMDCNPGPSNIRAEMLMTHYEKSDTFARVKMQALNLVKRSADEANLSHDLIVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKRENEDSSLQEEKRFKNNQQELYATNPALLLTQALLNRARESSPTTSLETLYANTIYRNFGTLTSGVIPPYFLTPHMFSQELAAKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYTAYSQSRDTLQTSSEQTAYANLMSAQMTNQVAPSREKTDGIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPTMVPNTGPSTSQVAQSYSSILPNVDTPVVTSTDYGTHPISDQVKYAILAQQLKVNKMDDNDSDDEMVIDEESADRDAQESQAQREPSTSLLRDQLENNENVKDIVIKTEAAEPAEETSEETPGEQTARSNVDSANPEESAASESKSIRAEETTMTESAEREQGKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVVCPYCERQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDVQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKVASRSESSDQQNSPPQCAAQNDQSDYESRSSSTSDNMENTPSVVAAAKPTSNASPSINDATRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKMNHKRSYEMLKAKGALDMASMNIDATEDHILASQQHPSDGEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEENSPAQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLSGRMANDSPQGAAPASLSSPPPPAEVPSESGDNDLISNLLGIRDKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -