Basic Information

Insect: Nylanderia fulva
Gene Symbol: RREB1
Assembly: GCA_005281655.1
Location: NW:122888-178411[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.9e-05 0.0023 18.0 1.1 1 23 52 74 52 74 0.97

2 15 0.00034 0.028 14.6 0.1 1 23 88 110 88 110 0.98

3 15 0.00015 0.012 15.8 4.1 1 21 116 136 116 139 0.95

4 15 0.00082 0.066 13.4 0.0 1 23 237 260 237 260 0.96

5 15 0.0029 0.23 11.7 6.6 2 23 266 288 266 288 0.96

6 15 0.13 11 6.5 0.2 1 23 513 535 513 535 0.96

7 15 7.1e-05 0.0057 16.8 0.2 1 23 544 566 544 566 0.98

8 15 0.0032 0.26 11.6 3.1 1 23 572 595 572 595 0.96

9 15 0.0028 0.23 11.7 2.2 3 23 958 979 956 979 0.96

10 15 0.00036 0.029 14.6 0.1 2 23 1253 1274 1252 1274 0.97

11 15 3.7 3e+02 1.9 11.8 1 23 1280 1303 1280 1303 0.96

12 15 0.0031 0.25 11.6 2.2 1 23 1346 1370 1346 1370 0.97

13 15 0.095 7.6 6.9 1.8 1 23 1449 1471 1449 1472 0.96

14 15 0.0085 0.68 10.2 0.4 2 23 1523 1544 1522 1544 0.94

15 15 0.002 0.16 12.2 5.2 1 23 1550 1572 1550 1572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.9e-05	0.0023	18.0	1.1	1	23	52	74	52	74	0.97
2	15	0.00034	0.028	14.6	0.1	1	23	88	110	88	110	0.98
3	15	0.00015	0.012	15.8	4.1	1	21	116	136	116	139	0.95
4	15	0.00082	0.066	13.4	0.0	1	23	237	260	237	260	0.96
5	15	0.0029	0.23	11.7	6.6	2	23	266	288	266	288	0.96
6	15	0.13	11	6.5	0.2	1	23	513	535	513	535	0.96
7	15	7.1e-05	0.0057	16.8	0.2	1	23	544	566	544	566	0.98
8	15	0.0032	0.26	11.6	3.1	1	23	572	595	572	595	0.96
9	15	0.0028	0.23	11.7	2.2	3	23	958	979	956	979	0.96
10	15	0.00036	0.029	14.6	0.1	2	23	1253	1274	1252	1274	0.97
11	15	3.7	3e+02	1.9	11.8	1	23	1280	1303	1280	1303	0.96
12	15	0.0031	0.25	11.6	2.2	1	23	1346	1370	1346	1370	0.97
13	15	0.095	7.6	6.9	1.8	1	23	1449	1471	1449	1472	0.96
14	15	0.0085	0.68	10.2	0.4	2	23	1523	1544	1522	1544	0.94
15	15	0.002	0.16	12.2	5.2	1	23	1550	1572	1550	1572	0.98

Sequence Information

Coding Sequence: ATGGCCCAACTGCGGAGGTCGAATCATGTGGAGCAAACCACGGGAGAAATGGCGGTTGAATCTGAAAATGGAACCGATCAAGAGCAGGAAAACGAAACACAAATCGATGCTGTATCACCATCATCAAGCGTCGAGCTGTCGGAGAACGGCGCGCATCCGTGTCCGATGTGCCCGTCGGTGTTCACCAGCTCTCACGAACTGACGAATCATCTGCGCGGCCATAATTCACCTCGCAGCACGGACTGCAGCGGCGAGGAGGACTACAGCTGCGGAGTCTGCAGCAAGGTGCTCAGCTCGGCCAGCTCTCTGGACCGACACGTGCTGGTGCACTCCGGCGAGCGACCCTTCAAGTGCAAGTACTGCGAGATGTCGTTCACGACGAACGGCAATATGAACCGGCACGTGAGGTGCACCCATCGGATGGCGTCGCCGAACAGTTGCACCGACTCCGAGGGTAGCAGCGGCTCGGAGAGACCAGCCACGACGAATCCGGGCGAGTACAACAACAACGAGTTGGCCAGGCGTGGCTCGCCGAGTCTCATCGACGAGCGACAGCAGGCGTCGTCTCCAGGGAGTCATCGCGCGAGCAAGCGTAAATTGCAGGAGGAAGAGGACGCCGGTGATACGGAGGAGCAGAAGAGGCACAAGACCCTCATGAACAACGGCACCATGATGATCAGGGTCCAACGGAATGGCGGGGAGATGACGTTCGAGTGTCTCATCTGCGGCAAGGATTTCGTGACGGAAGCGATGCTGGATGCTCACGTGGAACGCGCGCATCCCAAGTCCCTGGCCACCTGCGAGATCTGCAACACGTCCTTCAAGAGTCACCGGCAATTGAATCATCATCGTTTCACGAGTCATTGCAAGAAGAACGCGGGCGGCAGCAACAGCCGTCGCAGCATCGTGGACGGTTTCAACGATCTCACTCACCTGGAATTTTCCTCGCCGAACTTCCCGATGATCGCCCGAAGGGTGTGCGAGCAAGAGCTGCACCTCGCTTCCGGCGAGGTCCAGTTCCAGTGCATGAAGTGCCTGCACGCGTTCCCGTGCAAGCAGGCGCAACTCGATCACGAGAAGGAGTGCAAGGGTTCCTGCAAGAGTAAGAGAAACAGCAACGATAGCAACAATAATAATGACAACAATACCAACAACAATCTGGAAATGGAACTGGACGCTCCGTCTCCGCTGCCCGACGATCCCAAAACGACCCGCGAGATCTTTTTCGCCGTGCTGGATCTGCAGAACAAATCATCTTTGGCCCGAGGCGAAGCGAAGGAACCCAGAGAACTGAAGGAGATCAAAGAACCGAAGGAGATGAAGGATCTTGCGGATATCCCGAGTATTCTGTCTGTCAGTTTGAACGGATTGCCGACGTTCCCGCGATCGGACACCAGCACACCCGAAAACAACATCAAGTTTAACCCGAATATCGGCTCTTCAGGTTCTTCAGGCACCTGCTCGTCCGAGTTTAATGAAGAAGAGGCGCAGGATGCCTTCACCGCGGAATTCCGGAAGATGAAGCTCAAGGGTGAGTTTCCTTGCCGACTTTGCACGTCCGTGTTCCCCAATTTGCGAGCACTCAAGGGACACAATCGCGCGCATATGAACGTGGAACCTGGAATGCCATATCCGTGCAATATGTGTCCCTTCACCAGCACCGACAAGGGGGCCTTGTTGAAGCATCTGAGATCTCATAACGGTGATCGACCTTTCGAATGCTCCCTCTGCAATTATGCGTTTACCACCAAGGCCAATTGCGAAAGGCATGTGAAGAACCGTCATGGAATGATCAGCAAAGAGGATGTTAAGAATGCGCTGATCTATCATCCAAGCGAAGATTCGACGAATGAGAACGTCGAGAGAAGCTCGCCCAGAGGTATCAGAGACGACGTGAGAAAGTCGCTCGTCTATCCGAACGAGCGCGAGGAAATCTCTCAGCAGATACATTATCCTCCTGTATCGATGGACTGTAACCCGGGACCTTCGAACGTTTGCGCTGAGATGCTGATGAATCGCTATGAGAAGTCAGACATGTTTCACAGACCAACAAAGGCTCTGAATCTCGTGAAAAGAAACGGCGAGGAATTGAACGTATCTCAGGATCTGATCATCAAGTCTAATTATTCCAAGATCGATGAGGACGCCGAATCAAGATCATCGGATGGCAGCGTGTCTCTAGTCAGCGATACCAAAACAGATACACACCAAAGAATTCAAGCTAGTCCGATGAATCTGACCAAGTCTACGACAAGCTCCGTGTTGAGTTCGGGGGAGGACGCTCCGTTGGATCTGTCTATGGACGTTGTTCTGGATCTGAGCAGGAAACAGAAGAAGGAGAACGAGAATTCTCAGGAGGAGAAACATTTTAAGAATCAACAGGAACTGTATGCTGCGAGTCCGGCGTTGCTGTTGACTCAAGCCCTGCTGAACACAGCACGCGAGAATCCGCCGTCGCTGGAGAACTTGTACGCGAGTACTCTCTATCGCAATCTCGCCGGTGCCTCCATGATACCGCCGTATTTCCTCAATCCTCACATGTTCAGCCAGGAATTGGCCGAGAAGGGCAGACTCCAGAAGGAGCTGGTCAGGGGTTTGCAGTTGACCGGCGGCAGCACTCTTCCGGTGGATCCGTCGCTGCCCAGCACCAGTTATGCCGCATTCGCGCAAGCTCGAGACACCCCGCCAACCTCGAGCGAACACAACACCTACGCGAGCTTGATGAACGCCCAGATAGCCAGCCAGGCCGCGTCGAGTCGCGAGAAAACGGACAACATTTCGTCGAACGATCCCGTGAAGATGGTCTTGAAAAATGGCGTGCTGATCCCCAAGCAGAAGCAACGTAGATACCGCACCGAGAGACCATTCGGTTGCGAGCACTGCACGGCCAGATTTACTCTGCGAAGCAATATGGAACGTCACATCAAGCAACAGCATCCTCAGTATTGGAGCCAAAGACCTCGCGGTGGACACTCGACCCGAGGCAGACCACCCGCGAATCATTCGACTATAATGCAAAATCCTGGACCGTCGACCTCGCAAATAACTCAATCGTATCCGAATATCCTCCCAAACGTTGATTCATCAATGGTTACATCGGCGGACTATAATACGCATCCTATCTCAGATCAAGTAAAGTATGCCATTCTAGCACAACAATTAAAAGCCGATAAAATGGATGACAATGATTCAGATGACGAAATGGTGATAGATGAGGAGTCAGGCGACAGGGATGGTCAGGAGCCGCAAGCTCAGCATGAGCTTAGGACGAGCTTGCTTAGAGATCAGTTAGAGAGCAACGAGAGCAACGTTAAAGACGTCGTCGTGAAGAAGGAAGTGATCGAGCCTGCGGAAGATGATACCTCGGAAGAATCTCATGATGAACAGACTGCGCAAAACGGTGTAGACAGGACCAGCGCAGAAGAATCTACCGCTGCTGAAAATAAGTCAACACGTACCGAAGATATGAAGATCAAGATGGAACCCACCGGGAAAGAGCAGCAGAGCAAACTCGAGGATGGAGCAGCCGATCTCGCGAGTGTCTCGAAACTCTTGGACAACGCTTCTCAGCAGTATCAGCAATTTCAACCGCAATACCTGAGCGACGAGGAAGGCCCCGTGGCCTCGACCAGCGGCAACAACTCCGGCAGCGAAAAGTCCGACTCCAATTCTTTAAACTCCGGAAATGATTCTTCGTCgaataagaaaaagaagaagaagaagaaatccGCGTATTCGATGGCACCGAATCGAGTCCCGTGCCCTTTTTGCCCACGCCAATTTCCCTGGAGCTCGTCGCTGAGACGGCACATTCTAACTCACACCGGTCAGAAGCCGTTTCAGTGCATGCACTGCTCCCATCACTTCACCACAAAGTCCAACTGCGACCGCCACTTGTTGAGAAAACACAAGGCGAAGGCTAATAAGATGCGTCGTGCCAGAAACTCTTCCTCGCCGGACGTTCAGGTGGTTGCCAGCAGCAGCAGTAGTAGCAGCAATAACACCTTTTCCATGAGAAACGTGCCCGAGAGACCGTACAAATGCAATCAGTGTCCGAGCTCGACCTTTTCTACGTTAGGCAATCTCAAGAAGCACCGATCGACCAAGCATCGCAAAGCTATGTCCCGGTCGGAGTCTAGCGATCAACAAAACAGTCCACCGCAATGCTCCAACACGCAGAACGATCAGAGTGACTACGAGAGCCGATCCTCGAGCGCGTCCGAGAACATGGAGAATTCTGCTGGTGCAACCGCAAAGGCGAATTCTAACATGACATCGTCCATGAACGAGACCGCCAGATCGCGCAAGTCACCCAGATCCTCGCCTGGTCCCAGCGATGTTCCCTTCAAATGTTACTTGTGCGACAGCGGCTTTTCCGAGCGTCAGGATAATCTGGATCACATCAAAATGCATCACAAGCGCTCGTATGATATGTTGAAGGCCAAGGGCGCCCTCGATATGGCGACTATGAATATTGATGCGAGCGAAGATCAGATGGCACATCAGCATCTTAGTGATGGCGAAGAGAAAAGAGGTCGCTTTCCTGACTACAGCAATAGAAAGGTCGTGTGTGCCTTCTGCATGAGACGATTTTGGTCCGCGGAAGATCTCCGGCGTCACATGAGGACCCACACGGGCGAGAGGCCCTTCGAATGCGACATTTGCACCAGGAAGTTCACGCTGAAGCACAGCATGTTGCGCCACCGTAAGAAGCACGAGTCCGTGGATTCCGCCATGTACATAGGCAACAGCGGTGACGAGGACAATCCGCCCTCGCAGCCGCCGACGATAACACCTAAGAGTCAGCAGCATTCCCCGATCTCTACGAACACCAGCCGGCCCCGTACTCAGGATAGAATCTCTTTGCCGACCGTAGCGGCGGTCGCTACAGCGGACGCGGCACCCTGCGCTCTTATGCGGTACAATCACTATGACAACATGGCTACTACTCTTACCGGCAGAATGGCAAATGACGGCTCGCAGAGCACCGGATCTGCTTCTATACTTTCTCCGCCACCTCCTGCGGAGATACCCAGCGAGAGCGGCGATAACGACTTGATTTCCAATCTATTAGGAATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTGAGCTCGGCGGACGACGCGGCCAAGTTGTTGGGTGTCAAACATAGCGAGTGA
Protein Sequence: MAQLRRSNHVEQTTGEMAVESENGTDQEQENETQIDAVSPSSSVELSENGAHPCPMCPSVFTSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCSKVLSSASSLDRHVLVHSGERPFKCKYCEMSFTTNGNMNRHVRCTHRMASPNSCTDSEGSSGSERPATTNPGEYNNNELARRGSPSLIDERQQASSPGSHRASKRKLQEEEDAGDTEEQKRHKTLMNNGTMMIRVQRNGGEMTFECLICGKDFVTEAMLDAHVERAHPKSLATCEICNTSFKSHRQLNHHRFTSHCKKNAGGSNSRRSIVDGFNDLTHLEFSSPNFPMIARRVCEQELHLASGEVQFQCMKCLHAFPCKQAQLDHEKECKGSCKSKRNSNDSNNNNDNNTNNNLEMELDAPSPLPDDPKTTREIFFAVLDLQNKSSLARGEAKEPRELKEIKEPKEMKDLADIPSILSVSLNGLPTFPRSDTSTPENNIKFNPNIGSSGSSGTCSSEFNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPFTSTDKGALLKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRGIRDDVRKSLVYPNEREEISQQIHYPPVSMDCNPGPSNVCAEMLMNRYEKSDMFHRPTKALNLVKRNGEELNVSQDLIIKSNYSKIDEDAESRSSDGSVSLVSDTKTDTHQRIQASPMNLTKSTTSSVLSSGEDAPLDLSMDVVLDLSRKQKKENENSQEEKHFKNQQELYAASPALLLTQALLNTARENPPSLENLYASTLYRNLAGASMIPPYFLNPHMFSQELAEKGRLQKELVRGLQLTGGSTLPVDPSLPSTSYAAFAQARDTPPTSSEHNTYASLMNAQIASQAASSREKTDNISSNDPVKMVLKNGVLIPKQKQRRYRTERPFGCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHSTIMQNPGPSTSQITQSYPNILPNVDSSMVTSADYNTHPISDQVKYAILAQQLKADKMDDNDSDDEMVIDEESGDRDGQEPQAQHELRTSLLRDQLESNESNVKDVVVKKEVIEPAEDDTSEESHDEQTAQNGVDRTSAEESTAAENKSTRTEDMKIKMEPTGKEQQSKLEDGAADLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVPCPFCPRQFPWSSSLRRHILTHTGQKPFQCMHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDVQVVASSSSSSSNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHRKAMSRSESSDQQNSPPQCSNTQNDQSDYESRSSSASENMENSAGATAKANSNMTSSMNETARSRKSPRSSPGPSDVPFKCYLCDSGFSERQDNLDHIKMHHKRSYDMLKAKGALDMATMNIDASEDQMAHQHLSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEDNPPSQPPTITPKSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATTLTGRMANDGSQSTGSASILSPPPPAEIPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVKHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_00868296;
80% Identity: -