Basic Information

Insect: Aphaenogaster picea
Gene Symbol: RREB1
Assembly: GCA_003063865.1
Location: NJRM01000110.1:252147-261454[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.9e-05 0.0055 17.5 1.2 1 23 43 65 43 65 0.97

2 14 0.00016 0.018 15.9 0.1 1 23 79 101 79 101 0.98

3 14 5.3e-05 0.006 17.4 4.2 1 21 107 127 107 130 0.95

4 14 0.01 1.1 10.3 0.0 3 23 228 249 226 249 0.96

5 14 0.0053 0.6 11.1 3.7 2 23 255 277 255 277 0.96

6 14 0.16 18 6.4 0.2 1 23 504 526 504 526 0.96

7 14 2e-05 0.0023 18.7 0.2 1 23 535 557 535 557 0.98

8 14 0.0039 0.44 11.6 3.1 1 23 563 586 563 586 0.96

9 14 0.00044 0.05 14.5 3.1 1 23 957 980 957 980 0.97

10 14 0.00065 0.073 14.0 0.1 2 23 1251 1272 1250 1272 0.97

11 14 0.04 4.5 8.4 3.2 1 23 1345 1369 1345 1369 0.96

12 14 1.8 2.1e+02 3.1 2.4 1 23 1449 1472 1449 1472 0.97

13 14 0.01 1.2 10.2 0.4 2 23 1526 1547 1525 1547 0.94

14 14 0.0025 0.28 12.2 5.2 1 23 1553 1575 1553 1575 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.9e-05	0.0055	17.5	1.2	1	23	43	65	43	65	0.97
2	14	0.00016	0.018	15.9	0.1	1	23	79	101	79	101	0.98
3	14	5.3e-05	0.006	17.4	4.2	1	21	107	127	107	130	0.95
4	14	0.01	1.1	10.3	0.0	3	23	228	249	226	249	0.96
5	14	0.0053	0.6	11.1	3.7	2	23	255	277	255	277	0.96
6	14	0.16	18	6.4	0.2	1	23	504	526	504	526	0.96
7	14	2e-05	0.0023	18.7	0.2	1	23	535	557	535	557	0.98
8	14	0.0039	0.44	11.6	3.1	1	23	563	586	563	586	0.96
9	14	0.00044	0.05	14.5	3.1	1	23	957	980	957	980	0.97
10	14	0.00065	0.073	14.0	0.1	2	23	1251	1272	1250	1272	0.97
11	14	0.04	4.5	8.4	3.2	1	23	1345	1369	1345	1369	0.96
12	14	1.8	2.1e+02	3.1	2.4	1	23	1449	1472	1449	1472	0.97
13	14	0.01	1.2	10.2	0.4	2	23	1526	1547	1525	1547	0.94
14	14	0.0025	0.28	12.2	5.2	1	23	1553	1575	1553	1575	0.98

Sequence Information

Coding Sequence: ATGAATAAAGTTCACCTGCCGACAGTGACTGGACCTGAAAATGGACCTGACCAGGAACAGGAAAACGAAACGCAAATTGATGCTGCGTCACCATCATCAAGTGTTGAGCTGTCGGAGAACGGCGCGCATCCATGCCCGACGTGTCCGTCGGTGTTTTCCAGTTCCCACGAATTGACGAATCATCTGCGTGGCCACAACTCACCTCGCAGCACGGACTGCAGCGGCGAGGAAGACTACAGCTGCGGCGTATGCAATAAGGTGCTCAGCTCGGCGAGCTCGCTAGACCGACACGTGCTGGTGCACTCGGGCGAGCGGCCGTTCAAGTGCAAGTATTGCGACATGTCGTTCACGACGAACGGCAACATGAACAGACACGTGAGGTGCACCCATCGGATGGTGTCGCCGAACAGCTGCACAGACTCCGAGGGCAGTAGCGGCTCGGAGAGACCGGCGGCGGCGAGTCAGGACGAGTATAACAATAACGAGATAGCCAGGCGTAACTCGCCGGAGTTGATCGACAACCGGCAGCAACCGTCTCCCAGCAACAATCGCGTAAACAAACGGAAGTGTCCGGACGAGGATGTCAGCGACATGGAAGATCAGAGGAGGCACAAGATTCTCCTGAACAATACCAAGATGACGATCAGGTGTGAGCCAGAGGATGAGCAGAAGGCCTTCGGCTGTCCGATCTGCGGTCAGGACTTCGCGAGCAGCGCGATTCTGGAGTCTCATATGGACCGCGTGCATCCGGGCTCTCCGGCCACGTGCGAGACCTGCAACCAATCGTTCAAGAATCATCGCGCGCTGAACCTTCATCGTTCGATGAGACACTACAAGAAGAACTCGGAGGGCAACAACAGCCGTAGCCTGCGCAACACTGTGGACGGTTTCAGGGATTTGACATTCATCGACTTCTCGTCCATCAAGTTCCCGACGATCGCCCGGGCGATGTGCGAGCGCGAGCTGCACCGGCCAGCCTCCGGTGAGGCCAACAGGTTCCAATGTATGAAGTGTCTGCACGCGTTCCCCTGCAGGCAGGCCCAGCTAGCCCACGAGAAGGAATGCAAGGGCCCTtacaaaaacaagagaaacagcaacgacaataacaataacaacgaCATCAGTACCAATAACAATCTCGAGACGGAACTGGACGATTCGAGTCCGCAACCTGACGATCCTAAAACGAAACGCGAGATCTTCTTTGCTGTACTGGATCTGCAGAACAAGCCCTTAGCGCATGAGACAAAGGAGCCGCGGGAACCGAGCGAGATCAGGGATTCGAAAGAGACGAAGGACCTAGCGGATATCCCGAGCATCCTATCTGTCAGTCTGAATGGACTGCAGACCTTTCCTCGGTCGGATGCGAGTACGCCCGAGAATAATATCAAGTTCAATCCGAACATTAGCTCTTCAGGCTCTTCAGGCACCTGCTCGTCCGAGTACAACGAAGAAGAGGCACAGGACGCCTTTACCGCGGAATTCCGGAAGATGAAGCTGAAGGGCGAGTTCCCGTGCAGATTATGCACATCTGTATTTCCCAATTTGCGGGCGTTGAAGGGACACAATCGCGCGCATATGAACGTCGAACCGGGTATGCCATATCCATGCAATATGTGTCCGTACACCAGCACAGACAAGGGGGCTCTGATGAAGCATCTAAGATCGCACAATGGTGATCGGCCATTCGAGTGTTCTCTCTGCAATTATGCATTCACTACCAAAGCAAATTGCGAAAGGCACGTGAAGAATCGTCACGGAATGATCAGCAAGGAAGACGTTAAGAACGCGTTGATCTATCACCCGAGCGAGGACTCGACGAACGACAACATTGAGAGGAGCTCGCCCAGAGTTATCAGAGAAGACGTGCGGAAGACGCTTATTTATCCAAACGAACGCGAAGAAGCTCcccaacaacaacaacaacagatACATTATCCGGCTATAGCGGTGGATTGTAACCCTGGACCGTCAAATGTCCGCACCGAGATACTGATGAATCGCTATGAGAAGTCAGACACGTTCACCAGAGTAAAGGCTCTCAATCTCGTAAAAAGAAATGCCGACGAAGCAAATTTGTCTCACGATCTGATCGTGAAATCTAATTACTCGAAgatcgacgacgacgtcgagtCGGGATCGTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACGAGTTCTGGATTGAGCTCAGGGGAGGACGGTCCGTTGGATCTGTCCATGGATGTGTTGGATCTGAGCAGGAAGCGGAAGAGGGAAAGTGAGGATTCCGGCTTGCAAGAGGAGAAACGGTTTAAGAACAATCAGCAGGAATTGTACGCCACGAATCCAGCACTATTACTAACTCAAGCCCTGCTGAACAGAGCGCGCGAGAGTTCTCCGACGACATCGCTAGAAACTCTTTACGCAAATACTATCTATCGCAATTTCGGCACGTTAACCGGAGCCAGTATGATACCGCCGTACTTCCTCAGCCCTCACATGTTCAGCCAGGAATTAGCCGCGAAGGGCAGGCTGCAGAAGGAGCTGGTTAGAGGTTTGCAGCTGACCGGCGGCGGCACACTTTCGGTTGATCCATCACTGCCCAGCACCAGTTACGCGGCGTATCCGCAAACGAGGGATACCCCGCAACCTTCGAGTGAGCAGAATGCCTACGCGAATCTGATGAGTGCGCAGATGGTCAACCAGACTACGCCGAATCGCGAAAAAACGGACAGTATCCCATCGAATGATCCTGTGAAGATGGTACTCAAGAACGGAGTGCTGATCCCCAAGCAAAAGCAACGCAGATACCGGACCGAGAGACCTTTCACTTGCGAACACTGCACGGCGAGATTCACGTTGAGAAGCAACATGGAACGGCACATCAAGCAACAACATCCGCAGTATTGGAGCCAAAGACCCCGCGGCGGACATTCGACTAGAGGCAGACCACCCGCAAGTCATCCGACTATGGTACAGAATACTGGCCCGTCAACCTCGCAAGTAGCTCAACCGTATTCCAGCATTCTTCCGAACGTCGATACGCCGGTGGTCACGTCGACGGACTATGGCACGCATCCTATTTCAGACCAAGTGAAATATGCGATTCTGGCGCAACAGCTGAAGGCCAATAAAATAGATGACAATGATTCGGACGACGAGATGGTGATAGACGAGGAGTCGGCTGATCGAGACGCTCAGGAGCCGCAGGGTCAGCGCGAGCCTAGCACGAGCTTGCTGAGAGATCAGTTGGAAAGTAGTGAGAATGTCAAAGATATCGTCGTAAAGACAGAGGCGACCGAACCCGCGGAAGAAACCTCGGAGGAGACCCATAGCGAACAGACCGCACGAAGTAACGTAGACGACGCCAATCAGGAAGAATCCCCGGTTGCTGAAAGCAAGTCAATATGCGCTGAAGAAACGACTATGACCGAATCTGCCGAGAGGGAGCAAGGTAAACTCGAAGACGGAACGCCCGATCTCGCGAGTGTCTCGAAGCTCTTGGACAACGCATCCCAGCAATATCAGCAATTCCAACCGCAATACCTGAGCGACGAGGAGGGCCCCGTTGCGTCGACCAGCGGCAACAATTCCGGCAGTGAGAAGTCCGACTCTATGAACTCCTTGAACTCCGGGAACGATTCCTCAtcgaataagaagaaaaaaaagaagaagaagtctGCATACTCGATGGCTCCGAATCGCGTCGTATGCCCGTACTGTGAGCGTCAATTTCCATGGACCTCGTCGCTGAGACGACACATCCTTACCCATACCGGCCAGAAGCCGTATCAGTGCATCCACTGCTCGCATCACTTCACCACCAAGTCCAATTGCGACCGTCATCTACTGAGAAAGCACAAAGCGAAGGCGAACAAGATGCGTCGTGCTAGGAACTCATCCTCGCCGGATGTTCAGGTGGTcgccagcagcagcagtagcagcaacGGCAGTAACACGTTCTCTATGAGGAACGTACCTGAGAGGCCATTTAAATGCCATCAATGCCCGAGTTCAACGTTCGCCACATTGGGCAACCTAAAGAAGCACCGATCGAGCAAACATCGCAAGACCGCATCCAGGTCGGAGTCCAGCGATCAGCAGAACAGTCCGCCGCAATGCACCGCGCAGAATGACCAAAGCGATTACGAGAGCCGCTCATCCAGCATGTCTGACAACATGGAGAACACACCACCCGCCATTGCAGCCGCAAAGCCGACTTCCAATGCGTCTCCCTCGATAAATGATGCTACCAGGTCACGTAAATCACCGAGGTTGTCACCGAGTCCCGGTGACGTACCCTTCAAGTGTTACCTGTGTGACAGCGGCTTCTCGGAACGTCAGGACTGTCTGGACCACATCAAGACGAATCACAAACGCTCGTACGAGATGCTAAAGGCCAAGGGCGCCCTCGATATGGCATCCATGAATATAGACGCGACCGAAGATCAGATTTTGGCGTCGCAGCAGCATCCCAGCGACGACCCAGAAGAGAAGAAAGGCCGTTTTCCCGATTACAGCAACAGAAAGGTTGTGTGCGCTTTCTGCATGAGACGATTTTGGTCCGCGGAGGATCTCCGGCGTCATATGAGGACCCATACGGGCGAGAGGCCCTTCGAATGCGACATCTGCACCAGGAAATTTACGCTCAAGCACAGTATGCTGCGACACCGTAAAAAGCACGAGTCGGTGGACTCCGCAATGTACATAGGCAACAGCGGCGACGAGGAGAACTCGCCCGCGCAGCCGCCGACGATAACCCCGAGGAGTCAGCAACACTCGCCGATCTCCACCAATACCAGCAGGCCTCGCACTCAGGACAGAATGTCCCTGCCGACCGTCGCGGCGGTCGCAACGGCCGATGCGGCACCCTGCGCCCTGATGCGGTACAATCACTACGATAACATGACAGCCACTCTCACCGGAAGAATGGCAAACGACGGTCCCCAGGGTGCCGCTCCCGCCGCGTTGCCTTCCCCGCCGCCTCCCGCGGAGGTACCCAGCGAGAGCGGAGACAACGACTTAATCTCCAACTTGCTGGGGATACGCGAGAAAGGTTTGCTCGACAAGGTTCTTCTGAGCTCGGCGGATGACGCGGCGAAGTTATTGGGGGTCAATCATAGCGAGTGA
Protein Sequence: MNKVHLPTVTGPENGPDQEQENETQIDAASPSSSVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSGSERPAAASQDEYNNNEIARRNSPELIDNRQQPSPSNNRVNKRKCPDEDVSDMEDQRRHKILLNNTKMTIRCEPEDEQKAFGCPICGQDFASSAILESHMDRVHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNSEGNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETELDDSSPQPDDPKTKREIFFAVLDLQNKPLAHETKEPREPSEIRDSKETKDLADIPSILSVSLNGLQTFPRSDASTPENNIKFNPNISSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCTSVFPNLRALKGHNRAHMNVEPGMPYPCNMCPYTSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNDNIERSSPRVIREDVRKTLIYPNEREEAPQQQQQQIHYPAIAVDCNPGPSNVRTEILMNRYEKSDTFTRVKALNLVKRNADEANLSHDLIVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKRESEDSGLQEEKRFKNNQQELYATNPALLLTQALLNRARESSPTTSLETLYANTIYRNFGTLTGASMIPPYFLSPHMFSQELAAKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYAAYPQTRDTPQPSSEQNAYANLMSAQMVNQTTPNREKTDSIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPTMVQNTGPSTSQVAQPYSSILPNVDTPVVTSTDYGTHPISDQVKYAILAQQLKANKIDDNDSDDEMVIDEESADRDAQEPQGQREPSTSLLRDQLESSENVKDIVVKTEATEPAEETSEETHSEQTARSNVDDANQEESPVAESKSICAEETTMTESAEREQGKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDSSSNKKKKKKKKSAYSMAPNRVVCPYCERQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRARNSSSPDVQVVASSSSSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKTASRSESSDQQNSPPQCTAQNDQSDYESRSSSMSDNMENTPPAIAAAKPTSNASPSINDATRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKTNHKRSYEMLKAKGALDMASMNIDATEDQILASQQHPSDDPEEKKGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEENSPAQPPTITPRSQQHSPISTNTSRPRTQDRMSLPTVAAVATADAAPCALMRYNHYDNMTATLTGRMANDGPQGAAPAALPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: iTF_00128468;