Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: RREB1
Assembly: GCA_001594065.1
Location: NW:5708622-5716653[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.3e-05 0.0026 17.5 1.2 1 23 74 96 74 96 0.97

2 14 7.1e-05 0.0044 16.8 0.1 1 23 110 132 110 132 0.98

3 14 0.0001 0.0065 16.3 5.5 1 21 138 158 138 161 0.95

4 14 0.33 21 5.3 0.1 3 23 259 280 257 280 0.96

5 14 0.0046 0.29 11.1 3.7 2 23 286 308 286 308 0.96

6 14 0.15 9.3 6.4 0.1 1 23 536 558 536 558 0.96

7 14 1.6e-05 0.00098 18.9 0.2 1 23 567 589 567 589 0.98

8 14 0.0034 0.21 11.5 3.1 1 23 595 618 595 618 0.96

9 14 0.00039 0.024 14.5 3.1 1 23 987 1010 987 1010 0.97

10 14 0.00047 0.029 14.2 0.4 2 23 1275 1296 1274 1296 0.97

11 14 0.035 2.2 8.3 3.2 1 23 1369 1393 1369 1393 0.96

12 14 5.3 3.3e+02 1.5 1.6 1 23 1473 1496 1473 1496 0.90

13 14 0.0018 0.11 12.4 0.3 2 23 1549 1570 1548 1570 0.96

14 14 0.0021 0.13 12.2 5.2 1 23 1576 1598 1576 1598 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.3e-05	0.0026	17.5	1.2	1	23	74	96	74	96	0.97
2	14	7.1e-05	0.0044	16.8	0.1	1	23	110	132	110	132	0.98
3	14	0.0001	0.0065	16.3	5.5	1	21	138	158	138	161	0.95
4	14	0.33	21	5.3	0.1	3	23	259	280	257	280	0.96
5	14	0.0046	0.29	11.1	3.7	2	23	286	308	286	308	0.96
6	14	0.15	9.3	6.4	0.1	1	23	536	558	536	558	0.96
7	14	1.6e-05	0.00098	18.9	0.2	1	23	567	589	567	589	0.98
8	14	0.0034	0.21	11.5	3.1	1	23	595	618	595	618	0.96
9	14	0.00039	0.024	14.5	3.1	1	23	987	1010	987	1010	0.97
10	14	0.00047	0.029	14.2	0.4	2	23	1275	1296	1274	1296	0.97
11	14	0.035	2.2	8.3	3.2	1	23	1369	1393	1369	1393	0.96
12	14	5.3	3.3e+02	1.5	1.6	1	23	1473	1496	1473	1496	0.90
13	14	0.0018	0.11	12.4	0.3	2	23	1549	1570	1548	1570	0.96
14	14	0.0021	0.13	12.2	5.2	1	23	1576	1598	1576	1598	0.98

Sequence Information

Coding Sequence: ATGCGGTTAGAACGTCGGACGAGAACGTTGATAAGTGTTATTGTCTCGGCTCCATCTGCGGTTCGCTCTGGGTATCAGCTTCCGGAATACTTAGTCAGATTTGTGTCCTGTTCTGTCGCTGACACAGTTCCTTACCTAGTACGGCTAAACGGCGGATCCGGCGGTGGCTCCTGTTTATCCGCGGTTTTAAGGCCGGTTGAGCTGTCGGAGAATGGAGCGCATCCATGCCCGACGTGCCCGTCGGTATTTTCCAGTTCCCACGAACTGACGAATCATCTGCGCGGCCACAATTCACCTCGCAGCACAGACTGCAGCGGCGAAGAGGACTACAGTTGCAGCGTATGTAATAAGGTGCTCAGTTCGGCGAGCTCGCTGGACCGGCACGTGCTGGTGCACTCGGGCGAACGGCCGTTCAAGTGCAAACACTGCGATATGTCGTTCACGACGAACGGCAACATGAACCGGCACGTGAGGTGTACCCATCGGATGGTGTCGCCGAACAGCTGCACGGACTCTGAAGGCAGCAGCGGTTCGGAGAGACCGGCCGGGACGAGTCAGGACGAGTATAACAACAATGAGATAGCCAGGCACAATTCACCAGATCTGATCGACGATCGACAGCAACCGTCGCCCAGCAACAACCGCGGTAACAAGCGGAAGTGCGCGGACGAGGACATCAGTGACATGGAGGATCAGAGGAGACATAAGATCCTTTTGAACAACAACAAGACGTCGATCAGGTGTCGGCCAGAGGATGAGCACAAAACCTTCGGTTGTTCGCTCTGTAGTCAGGATTTCGCGAGCAGTGCGATTTTGGAATCCCATATGGAGCGTATGCATCCGGGTTCTCCAGCTACGTGCGAGACCTGCAACCAGTCGTTCAAGAACCATCGCGCGCTGAACCTTCATCGATCAATGAGACACTACAAGAAGAACCCGGAAGGCAACAACAGCCGTAGCCTACGCAACACCGTGGACGGTTTCAGGGATCTGACGTTCATCGATTTTTCGTCTATCAAATTTCCGACGATCGCTCGGGCGATGTGCGAGCGTGAACTGCATCGGCCGGCCTCTGGCGAAGCCAATAGGTTCCAATGCATGAAGTGCTTGCACGCGTTCCCCTGCAGACAAGCCCAGCTTGCCCACGAGAAGGAATGCAAGGGTCCCTACAAGAACAAAAGAAACAGCAAtgacaacaataataacaacgaTATCAGCACTAACAACAATCTCGAGACAGAGCTAGACAATCCAAGCAGCCCGCAGCCCGATGATCCCAAGACGAAGCGCGAGATGTTCTTCGCTGTGTTGGATCTGCAGAACAAGTCTTTGGCGCACGAGGTGAAAGAGCCACGAGAATCAAACGAAATCAGGGAACCGAAGGAGACTAAGGATCTAGCAGATATCCCGAGCATTCTATCCGTTAGTCTAAATGGACTACAGACCTTTCCTCGATCGGATGCGAGCACGCCCGAGAATAACATGAAGTTCAATCCGAATATTGGATCTTCAGGCTCGTCAGGCACCTGTTCGTCCGAATACAATGAAGAAGAGGCGCAGGATGCCTTCACCGCGGAATTTCGGAAGATGAAACTGAAGGGCGAGTTTCCATGTAGACTATGCTCATCTGTATTTCCTAATTTGCGAGCACTGAAAGGACACAATCGCGCGCATATGAACGTGGAACCGGGTATGTCGTATCCGTGCAATATGTGTCCGTATAGCAGTACTGACAAGGGCGCCCTGATGAAGCATCTGAGATCGCATAACGGTGATAGGCCGTTCGAGTGTTCTCTCTGCAATTATGCGTTCACCACCAAAGCGAATTGTGAGAGGCACGTGAAGAATCGTCATGGGATGATCAGCAAGGAAGACGTTAAGAATGCACTAATCTATCATCCGAATGAGGATTCGACAAATGAAAACATCGAGAGAAGCTCGCCCAGAGTCATCAGAGAAGATGTGCGGAAGACGCTTATTTATCCGAATGAACGCGAAGAGACTTCTCAATCACAACAAATACATTATCCGTCTATAGCGATGGACTGTAATCCTGGACCATCGAACATTCGCTCAGAGGTAACGATGAATCGCTATGATAAATCGGACGCGTTCAGAGTGAAGATGCAGGCTCTCAACCTTGTCAAAAGAAACGCCGACGAAGCAAACCTTTCTCACGATATGATCGTGAAATCTAATTATTCGAAGATCGACGACGATGTCGAGTCGGGATCCTCGGACGGCAGCGTGTCTCTAGTCAGTGATACCAAAACGGATACACACCAAAGAATTCAAGCTAGTCCGATGAACCTGACGAAGCCCTCGACAAGCTCTGGGTTGAGCTCGGGGGAGGACGGTCCATTAGATCTGTCCATGGATGTGCTGGATCTGAGCAGAAAGCGAAAGAGGGAAGCCGAGGATTCCGGGTCGCAGGAGGAGAAGCGGTTTAAGAGTAATCAACAGGAATTGTATGCCACGAATCCAGCGCTGCTGCTGACTCAAGCCCTACTGAACAGAGCACGCGAGAGTTCACCAACGACCTCACTGGAGACTCTTTATGCGAATACTATTTATCGCAATTTCGGCACGTTAACTGGTGCCAGCATGATACCGCCGTACTTCCTCAGTCCTCACATGTTCGGCCAGGAATTAACGAAGGGCAGACTGCAGAAGGAACTGGTTAGAGGTTTGCAGCTCACTGGTGGCGGCACACTTTCAGTTGATCCGTCACTGCCCAGCACCAGCTACGCAACGTATCCGCAAACAAGAGACACTCCGCAATCCCCGAGTGAACAAAATGCTTATACAAACTTGATAAATACGCAGATTACTAATCAGACCGCGCCGAGCCGCGAAAAAACAGAAAGTATCCCGTCAAACGATCCCGTGAAGATGGTACTCAAGAACGGAGTGTTAATCCCCAAGCAAAAGCAACGCAGATATCGTACCGAGAGACCTTTTACTTGCGAGCACTGCACGGCGAGATTCACACTGAGGAGTAATATGGAACGGCATATCAAGCAACAGCATCCGCAGTATTGGAGTCAAAGGCCTCGCGGCGGACATTCGACTAGAGGCAGACCACCTGCGAGTCATCCATCTATGGTACAGAATACTGGCCCGTCAACCTCGCAAGTAGTTCAGCCATATTCGAGCATTCTTCCGAACGTCGACACATCAGTCACATCGACGGACTACGGCACACATCCTATCTCGGACCAAGTAAAATACGCGATTTTGGCGCAACAGCTGAAGGCCAACAAAGTAGATGATAATGATTCAGACGACGAAATGGTGATAGACGAGGAGCCGGGAGATCGAGATCAGGAGTCGCAAACTCAACGCGAGCCTAGTATGAGTTTGTTGAGAGATCAGTTAGAAAGCAGCGATGTTAAAGATATCGTCGTAAAAACGGAAGCGACCGAGCCCACGGAAGAAACCTCGGAAGAAATCCACGATAAACAGTCCACACGGAATAAGATCGATGACGCCGATTTGGAAGAATCCGTGGCTGAAAGTAAGTCAATACGCACTGAAAAAACGACACAATCCACTGAAAAAGAACAAGGCAAACTCGAAGACGGGACACCCGACCTCGCTAGTGTCTCAAAGCTTTTAGACAATGCGTCTCAGCAATATCAGCAATTTCAACCGCAATATTTGAGTGACGAGGAGGGCCCCGTTGCATCGACCAGCGGTAATAATTCCGGCAGTGAAAAATCCGATTCTATGAACTCGTTGAACTCCGGGAATGATGTCACGccaaacaagaagaagaaaaagaagaagaagtccGCGTATTCAATGGCACCGAACCGCGTTTCATGTCCATATTGTAAACGTCAATTTCCATGGACTTCGTCGCTGAGACGACACATTCTCACCCACACCGGTCAGAAGCCGTATCAGTGCATTCATTGTTCGCATCATTTCACTACAAAGTCCAACTGCGACCGCCATTTGTTGAGAAAGCACAAGGCGAAGGCGAACAAGATGCGCCGTGTTAGGAATTCATCCTCGCCTGACGTTCAGGTAGTCGctagcagcagcaacagcagcaacgGCAGTAACACGTTCTCCATGAGGAATGTGCCCGAGAGGCCGTTCAAATGCCATCAGTGCCCAAGCTCGACGTTCGCGACATTGGGCAATCTGAAGAAGCACCGGTCGAGTAAGCACCGTAAGAACGCATCTAGATCGGAATCTAGCGATCAACAGAACAGTTCGCCTCAATGCCCCGCGCAAAACGACCAGAGCGATTACGAGAGCCGTTCATCGAGCATGTCTGACAACATGGAGAACACGCCGTCTGCCGTCACAGCTGCGAAGCCGACTTCcaacgtgtccccctcgataAATGACGCCACCAGATCACGCAAATCACCAAGATTGTCTCCGAGTCCTGGCGACGTACCCTTCAAATGTTATCTGTGCGACAGCGGTTTCTCGGAACGTCAGGACTGCCTGGACCACATCAAGGCCAGTCATAGTCGTTCGTACGACATGTTGAAGGCCAAGGGCGCTCTCGACATGGCGTCCATGAATATAGATGCAAACGAAGATCAGATGTTAGCGTCGCACCAGCATCCCAGTGAcggagaagaaaagaaaggcCGTTTCCCCGATTACAGCAACAGAAAGGTTGTGTGCGCTTTCTGCTTGAGACGATTTTGGTCCGCGGAGGATCTCCGGCGTCACATGAGGACCCACACGGGTGAGAGGCCCTTCGAATGCGACATATGTACCAGGAAATTCACGCTCAAACACAGCATGCTGCGCCATCGTAAGAAGCACGAGTCGGTGGACTCCGCCATGTATATAGCCAACAGCGGCGACGAGGACAACTCGCCCACGCAGCCACCAACGATAACTCCCAGGAGCCAGCAGCACTCACCGATCTCCACCAACACCAGCAGACCCCGTACTCAAGATAGAATCTCCTTGCCGACCGTCGCGGCGGTAGCAACGGCGGATGCGGCACCCTGCGCCCTGATGCGGTACAATCACTACGATAATATGGCCACTCTCACTGGTAGAATGGCGAACGATGGTCCACAGGGCGCCGTACCCGCCTTGCTGCCTTCCCCGCCGCCTCCCGCGGAGGTACCTAGCGAGAGTGGAGACAACGACCTGATCTCCAACTTGCTGGGGATACGCGAGAAAGGTTTACTCGACAAGGTTCTTCTAAGCTCGGCGGACGATGCGGCGAAGTTATTAGGTGTGAACCATAATGAGTAA
Protein Sequence: MRLERRTRTLISVIVSAPSAVRSGYQLPEYLVRFVSCSVADTVPYLVRLNGGSGGGSCLSAVLRPVELSENGAHPCPTCPSVFSSSHELTNHLRGHNSPRSTDCSGEEDYSCSVCNKVLSSASSLDRHVLVHSGERPFKCKHCDMSFTTNGNMNRHVRCTHRMVSPNSCTDSEGSSGSERPAGTSQDEYNNNEIARHNSPDLIDDRQQPSPSNNRGNKRKCADEDISDMEDQRRHKILLNNNKTSIRCRPEDEHKTFGCSLCSQDFASSAILESHMERMHPGSPATCETCNQSFKNHRALNLHRSMRHYKKNPEGNNSRSLRNTVDGFRDLTFIDFSSIKFPTIARAMCERELHRPASGEANRFQCMKCLHAFPCRQAQLAHEKECKGPYKNKRNSNDNNNNNDISTNNNLETELDNPSSPQPDDPKTKREMFFAVLDLQNKSLAHEVKEPRESNEIREPKETKDLADIPSILSVSLNGLQTFPRSDASTPENNMKFNPNIGSSGSSGTCSSEYNEEEAQDAFTAEFRKMKLKGEFPCRLCSSVFPNLRALKGHNRAHMNVEPGMSYPCNMCPYSSTDKGALMKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPNEDSTNENIERSSPRVIREDVRKTLIYPNEREETSQSQQIHYPSIAMDCNPGPSNIRSEVTMNRYDKSDAFRVKMQALNLVKRNADEANLSHDMIVKSNYSKIDDDVESGSSDGSVSLVSDTKTDTHQRIQASPMNLTKPSTSSGLSSGEDGPLDLSMDVLDLSRKRKREAEDSGSQEEKRFKSNQQELYATNPALLLTQALLNRARESSPTTSLETLYANTIYRNFGTLTGASMIPPYFLSPHMFGQELTKGRLQKELVRGLQLTGGGTLSVDPSLPSTSYATYPQTRDTPQSPSEQNAYTNLINTQITNQTAPSREKTESIPSNDPVKMVLKNGVLIPKQKQRRYRTERPFTCEHCTARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPASHPSMVQNTGPSTSQVVQPYSSILPNVDTSVTSTDYGTHPISDQVKYAILAQQLKANKVDDNDSDDEMVIDEEPGDRDQESQTQREPSMSLLRDQLESSDVKDIVVKTEATEPTEETSEEIHDKQSTRNKIDDADLEESVAESKSIRTEKTTQSTEKEQGKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSMNSLNSGNDVTPNKKKKKKKKSAYSMAPNRVSCPYCKRQFPWTSSLRRHILTHTGQKPYQCIHCSHHFTTKSNCDRHLLRKHKAKANKMRRVRNSSSPDVQVVASSSNSSNGSNTFSMRNVPERPFKCHQCPSSTFATLGNLKKHRSSKHRKNASRSESSDQQNSSPQCPAQNDQSDYESRSSSMSDNMENTPSAVTAAKPTSNVSPSINDATRSRKSPRLSPSPGDVPFKCYLCDSGFSERQDCLDHIKASHSRSYDMLKAKGALDMASMNIDANEDQMLASHQHPSDGEEKKGRFPDYSNRKVVCAFCLRRFWSAEDLRRHMRTHTGERPFECDICTRKFTLKHSMLRHRKKHESVDSAMYIANSGDEDNSPTQPPTITPRSQQHSPISTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGPQGAVPALLPSPPPPAEVPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVNHNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016049;
90% Identity: iTF_01355659;
80% Identity: -