Curb002670.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- -
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000019.1:747223-770410[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-10 1.6e-07 32.1 0.0 1 38 524 562 524 567 0.89 2 4 8e-13 5.2e-10 40.1 0.1 2 39 579 616 578 619 0.94 3 4 2.4e-17 1.6e-14 54.6 0.0 1 45 633 678 633 678 0.98 4 4 1.1e-18 7.4e-16 58.8 0.0 1 42 685 727 685 730 0.96
Sequence Information
- Coding Sequence
- ATGTTCAACTGCTTTCGAAGATCTGATGTCATTGGCTCATTTGAAAGTACTGAAACGGAGGCGGCGAGGATGGGCCTGGCTTTAAATGAGACCAAAAGGAAATCATGGAAAAATGACATCGAGGGTCTTCTACGTACAGCCGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCGGCCACAGCGACCATCACTGTTTCAGAAAATATAACCCAGGCGGTTGTTGGGAATATTGTGAATGCAACACAGGGTAATGCAATAGTTACAACACATACAATTGCCAACAACACAAATTCGCATACAACAACAGCAAACttaaacaataacaataatattaattcaaatattaatGCTGTAGTTGCACCGCCAGCGGCCACATCCACGCCCCAGCTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCGCCGGATACGAAtctgcaacaacagcaacagcagcaacatcaacaacaacagcagcagcagcatcaacaacagcaacatcaacaacaacaacagcagcagcaccatCAGGCAATATTAAGTCAAAATCTTAATACAGCGGGAATAGTTAGCCTGCAACAGACGTCGTCGGGCAACTATATACCTGTGACTGGTGGTCAGACGATAACGACGACTGCTGTTAGCCAACATAACGCCGAGGACTCAGATTCCGATAAGCCAACATCGCAGAAAATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACACAAATTGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGATTCTTAGATTTTGCACCAGAACCACCAGCACCATCAGCCACGCCTGTAACCGTGACGGAACATGTCGACTTATCCTGCAATCCCAGTACAGATACCCGAGATCTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGACTTGATCAGTCGCCCATGCATACGATTCACCATCAGTCGTCTACGGGCGATGAGAGCAACTCCAATCTGATCCAGCATATTAAGAGTGAAGTGATTGAGGTGAAGCATCATCACCAACAGCAGCAGTTGCATGCGCAAGCTTTATCCCAGCAAGCACAatctcaacaacaacaacaacagcaacagcatcaacagcagcagcaacaacagcaacaccaacaacaacaacagcaacaacaacaacagcagcagcatcaacaacaTCAAGACATTTCCGGTGCAACTGTCATGGAAATTGACACGAGCAACATCAAGCATGAGCCGGGAATGATCATCACCCCGGAAATTGTTACAATGATGGCAACTGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACAAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAACGAAGATTCATTAAACAGCGCTCTGGAGGCTTTGCGAACTGGCCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTACAAGATTGCACGACGCGAAGGTATACGATTGGCGGCACCATTCAATGCGGCGCCTACAACATGGACGCCCGAGGATTTAGAGCGTGCTCTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAACAGGCACACTCTATGGCCGTTGTAAGCGTGAGGGTATTGAATTATCGCGCTCAAATCCGACACCTTGGTCGGAGGATGCTATGAATGAGGCGTTAAATTCTGTtagAGTCGGACAGATGTCCATCAACCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGTAAATACGACATTGCTAACACGAGTGCATCGTCGATTAACAACACATCGGGCAACACAAGCGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAAacccaacagcaacaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcagcagcatcaacaacaCCAACAGCAACCCCAACACATCCATCAACATCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACTCCCGAGAGGAGTTGA
- Protein Sequence
- MFNCFRRSDVIGSFESTETEAARMGLALNETKRKSWKNDIEGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNSHTTTANLNNNNNINSNINAVVAPPAATSTPQLRKSRVRKRSKSPDTNLQQQQQQQHQQQQQQQHQQQQHQQQQQQQHHQAILSQNLNTAGIVSLQQTSSGNYIPVTGGQTITTTAVSQHNAEDSDSDKPTSQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKHHHQQQQLHAQALSQQAQSQQQQQQQQHQQQQQQQQHQQQQQQQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQHIHQHQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663975; iTF_00427041; iTF_01522465; iTF_01521796; iTF_00240582; iTF_01223302; iTF_00893772; iTF_00984142; iTF_01541358; iTF_01542127; iTF_00665552; iTF_00426258; iTF_01299925; iTF_01396407; iTF_00664761; iTF_00974555; iTF_00389533; iTF_01520877; iTF_00688520; iTF_00334895; iTF_00672145; iTF_00976372; iTF_00670871; iTF_01116362; iTF_00991671; iTF_01044633; iTF_00312506; iTF_00311726; iTF_00310167; iTF_00313367; iTF_01300762; iTF_01301007;
- 90% Identity
- iTF_00311726;
- 80% Identity
- -