Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392462.1:28456720-28476381[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.9e-11 1.3e-07 32.2 0.0 1 38 486 524 486 529 0.89

2 4 2.2e-13 4.2e-10 40.2 0.1 2 39 541 578 540 581 0.94

3 4 6.6e-18 1.3e-14 54.6 0.0 1 45 595 640 595 640 0.98

4 4 1.5e-19 2.9e-16 59.9 0.0 1 44 647 691 647 692 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.9e-11	1.3e-07	32.2	0.0	1	38	486	524	486	529	0.89
2	4	2.2e-13	4.2e-10	40.2	0.1	2	39	541	578	540	581	0.94
3	4	6.6e-18	1.3e-14	54.6	0.0	1	45	595	640	595	640	0.98
4	4	1.5e-19	2.9e-16	59.9	0.0	1	44	647	691	647	692	0.96

Sequence Information

Coding Sequence: ATGGTGGGCCTTCTGCGGACAGCTGAGCAATTAAAAATCAAAGGCCTTTGCGAGACAGCCGAAAGTGTTGATGATATCTCGGAGGCAGCAACTGCAACCATCACAGTATCGGAGAATATCACACAGACGGTTGTTGGGAATATTGTGAATGCACCACAGGGTAATGCAATTGTCACTACACACACAATCGCAAACAACACAAATACCCATACAACACCAGCAAACTTAAATAACAATAATATTAATTCAAATATTAATGCTGTAGTTGCACCGCCAACGGCCGCATCCACGCCGCTAGTACGAAAATCTCGGGTcagaaagcgctcaaaatcaccggacacgcagcagcatcaacaacaacagcagcagcaacaacatcaacaacaccagcaacagcagcagcaacaccaacagcagcagcaacagcaccatcagcaagcaatactaaatcaaagtctaaatacagcggctatagttagcctgcagcagacctcgtctggtagctatataccagtttcaggtggtcaaacgataacaacgacagccgttagccagcaaaaCTCCGAAGACTCGGACTCAGAGACTAAGCCCAGTTCCCATAAAATTTGCAAAACCGAAGCGGCCAATTCACCGGCAACGAATAATGGAAGTGTAACTGTCCCCCAAGGAACAGCAATTGTGACACAAATCGTAGTAGCACGAGACGTTAAAGATAATAAAAATATGACGAGTCTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTCGCACCAGAACCACCGGCACCATCAGCAACGCCTGTAACCGTGACAGAACACGTGGACCTATCATGTCACCCCAGCACGGATACGAGAGACCTATCAAATCCCACCGAAACGCTCGATATTGACAATCATTTAGCACAACACATGATCCAACGGCTTGATCAATCACCCATGCACACAATCCACCATCAGTCGTCTACGGGCGACGAGAGTAACTCCAATCTGATTCAACACATCAAGAGTGAAGTTattgaggtgaaacaccatcatcagcagcagcagttgcatgcgcaagctttatcccagcaaggacaatctcaacagcagcagcaacaacaacaacagcaacaacatcaacaacaacagcagcaacaccaacaacaacagcagcaacaacagcaacaacaacagcatcagcaacatcaagacatttccggagcaacagtcatggaaatcgatccaagtaatatcaaacacgaaccaggaatgattatcacgccggaaattgtcaccatgatggcaacTGGTCATATGGATATTTATTCAGATGCCAGTGAAGATTCATTGATGATTGCAAATGGTTCCCCAAATGACAATAACGAGCCACACTATACAAATTTGGACCAACCACATGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTATGGCAACGTGCCCATCGTATGGGTATTGAAACACCCAAAAAGGAGGGCGGTACCAAGTCATGGAATGAAGATTCGTTAAATAGCGCTTTGGAGGCATTGCGAACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTACGGAATTCCGTCCTCGACATTGTATAAGATTGCACGACGCGAGGGCATACGATTGGCGGCACCATTTAATGCGGCGCCGACCACATGGACGCCCGAAGATTTAGAACGTGCCCTCGAAGCAATTCGTGCTGGCCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAACAGGCACACTATATGGTCGCTGCAAGCGTGAAGGCATTGAGTTGTCACGATCGAACCCAACACCATGGTCAGAAGATGCCATGAATGAGGCATTGAACTCTGTTAGAGTTGGACAAATGTCCATCAATCAAGCGGCTATTCACTACAACCTTCCCTATAGCTCCCTGTACGGTCGCTTTAAGCGCGGCAAATACGACATCTCGAATGCAAGCGCATCGTCTATCAACAACACATCGGGCAACACAAGCGGCAGCATCGAAATCATCGAGCATAGTCCAGAGAATTCGTTGCACATGTTtcagcaacagttccaatacagtccagcgccgcagtcaaaccatcaaacccaacagcagcagcaacaacaacagcagcagcaacagcagcaacaacagcagcagcaacaacagcagcaacaacatcaacaacaacaccaacagcaaccacaacacatccatcagcacgttgtgcacattcagcagcaacaaacaccccaacatcatcatcaacaacatatccaacaacaagatgttgtcacctcaacaagtcaggttcacacccaagctggacaaatccaacaaATCTATCACCATCACAGCACTCCCGAGAGGAGTTGA
Protein Sequence: MVGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQTVVGNIVNAPQGNAIVTTHTIANNTNTHTTPANLNNNNINSNINAVVAPPTAASTPLVRKSRVRKRSKSPDTQQHQQQQQQQQHQQHQQQQQQHQQQQQQHHQQAILNQSLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQNSEDSDSETKPSSHKICKTEAANSPATNNGSVTVPQGTAIVTQIVVARDVKDNKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCHPSTDTRDLSNPTETLDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKHHHQQQQLHAQALSQQGQSQQQQQQQQQQQHQQQQQQHQQQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISNASASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQQQPQHIHQHVVHIQQQQTPQHHHQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00314183;
90% Identity: iTF_01542127;
80% Identity: -