Cscu026472.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- -
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:53973816-53994637[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 1.3e-07 32.0 0.0 1 38 577 615 577 620 0.89 2 4 5.5e-13 4e-10 40.0 0.1 2 39 632 669 631 672 0.94 3 4 1.7e-17 1.2e-14 54.5 0.0 1 45 686 731 686 731 0.98 4 4 7.9e-19 5.7e-16 58.7 0.0 1 42 738 780 738 783 0.96
Sequence Information
- Coding Sequence
- ATGAAGATTCAATTCCCAATTGCAACTATTTCCTATACCCTCTTTGCAGTCTTGCTGGATATATCGCAATCAGCAATAGATGATTTTGTGAAGCTCCTACGACAAGCATGGTTGTTGTGTGGCAGAAAGCGGCCCAACGAAAACCGTGGTTTCGAGAGGCACTTTACCGGGTTCCATGATTTCCCACAATCAACAGTAGTGTCAGAAAGCAGCTCAATGACAGCGTGGGTCCCTGAGGCCTTGCTCAACTACAAACAATTTTTCCTTGAGGCATTAATGTGCTattacacgGGTCTTCTACGGACAGCCGAGCAATTGAAAATCAAAGGGCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCAGCCACAGCGACCATCACCGTTTCAGAGAATATAACGCAGGCGGTTGTTGGGAATATAGTGAATGCAACACAGGGTAATGCAATAGTTACAACACACACAATTGCAAACAACACAAATACGCATACAACAACAGCAAActtaaacaataacaataatataaattcaaatattaATGCTGTAGTTGCACCAACAACGGCCACATCCACGCCCCAGCTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCGCCGGATACAAAtctgcaacagcaacagcagcagcaacatcaacaacaacagcagcagcagcaccaacaacaacagcaacatcaacagcagcagcaccatCAACAAGCAATATTAAGTCAAAATCTTAACACAGCGGCAATAGTTAGCCTGCAACAGACGTCATCGGGCAACTATATACCCGTCTCTGGTGGTCAGACGATAACAACGACTGCTGTTAACCAACATAACTCCGAGGAATCAGATTCTGATAAGCCAACATCGCAGAAAATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAGCAGCAATTGTAACACAAATTGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaacGGCGGTCTCCTCGGAGTACCAATGGGCTTCTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACCGTGACGGAGCATGTCGACTTATCCTGCAATCCCAGTACAGATACCCGAGATTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGACTTGATCAATCGCCCATGCATACGATTCACCATCAGTCGTCTACTGGCGATGAGAGTAACTCCAATCTTATTCAGCATATTAAGAGTGAAGTGATTGAAGTGAAACAGCATCATCACCAACAGCAGCAGTTGCATGCGCAAGCTTTATCCCAACAAGGACAAtctcaacaacaacagcagcagcaacagcatcaacagcagcagcaacaacagcaacaccaacagcagcaacaacaacaacagcagcatcaACAACATCAAGACATTTCCGGTGCAACTGTCATGGAAATTGACACGAGCAACATCAAGCATGAGCCGGGCATGATCATCACACCGGAAATTGTTACAATGATGGCAACTGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGAACCAAATCATGGAACGAAGATTCATTAAACAGCGCTTTGGAGGCTCTGCGAACTGGCCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTACAAAATTGCACGGCGCGAGGGTATACGACTGGCGGCACCATTCAATGCGGCGCCTACAACATGGACGCCTGAGGATTTAGAGCGTGCTTTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTTCTGAATTTGGTATACCAACAGGCACACTTTATGGCCGCTGTAAGCGTGAGGGTATTGAATTATCGCGCTCCAATCCGACACCATGGTCGGAGGATGCTATGAATGAGGCGTTGAATTCGGTTAGAGTCGGACAAATGTCCATCAATCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCGCTGTATGGACGCTTCAAGCGCGGTAAATACGACATTGCCAATACGAGTGCATCTTCTATTAACAACACATCGGGCAACACAAGTGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAAacccaacaacaacagcagcagcagcaacagcaacaacaacagcagcagcatcaacaacaCCAACAGCAACCCCAACACATCCATCAACATGTTGTACACATTCAACAGCAAACCCcacaacaacatcatcatcaacagCAACATATCCAACAGCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCATCATCACAGCACCCCCGAGAGGAGTTGa
- Protein Sequence
- MKIQFPIATISYTLFAVLLDISQSAIDDFVKLLRQAWLLCGRKRPNENRGFERHFTGFHDFPQSTVVSESSSMTAWVPEALLNYKQFFLEALMCYYTGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAVVAPTTATSTPQLRKSRVRKRSKSPDTNLQQQQQQQHQQQQQQQHQQQQQHQQQQHHQQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVNQHNSEESDSDKPTSQKICKTEAANSPTSNNGSVTVAQGAAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQHHHQQQQLHAQALSQQGQSQQQQQQQQHQQQQQQQQHQQQQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQHQQHQQQPQHIHQHVVHIQQQTPQQHHHQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01542127;
- 80% Identity
- -