Cnem005241.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:90831934-90841454[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-11 7.3e-08 32.1 0.0 1 38 494 532 494 537 0.89 2 4 5.2e-13 6e-10 38.8 0.1 2 39 549 586 548 589 0.94 3 4 6e-18 7e-15 54.6 0.0 1 45 603 648 603 648 0.98 4 4 2.8e-19 3.3e-16 58.9 0.0 1 42 655 697 655 700 0.96
Sequence Information
- Coding Sequence
- ATGCAGATTCCTATGgGCCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGACTCTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCAGCACAAGCTACCATCACAGTGTCAGAGAATATAACACAAGCGGTTGTTGGAAATATAGTGAATGCAACACAGGGTAATGCAATAGTCACTACACACACAATTGCAAACAACACAAATACGCATACAACAACAgcgaatttaaataataataaccttAATTCAAATATTAATGCTGTAGTTGCTGCACCAACAACGGCAACAACTACGCCGCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCTCCAGATAcgaatcaacagcaacaacaacaacaacaacagcagcagcaacaacatcaccaacaacagcaacaacatcaacaccatcaacagcaacaacaacaagcaatATTAAGTCAAAATCTTAACACAGCGGCAATAGTTAGCCTGCAACAGACGTCATCAGGGAATTATATACCAGTCTCTGGAGGTCAGACAATAACGACGACAGCCGTTAGCCAACAGAGCTCTGAGGACTCTGATTCAGATAATAAGCCAAGTGCACAGAAAATTTGCAAAACCGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACAGTGACGGAACATGTGGATTTATCGTGCAATCCTAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAATCGCCAATGCATACGATCCACCATCAGTCGTCAACGGGTGATGAAAGTAATTCCAATCTAATTCAGCACATTAAGAGTGAAGTGATTGAggtgaaacaacaacaacagcatcatcatcagcagcaacaacagcaattgCATGCGCAAGCTTTATCCCAGCAAGGACAAtctcaacaacagcagcagcagcagcaacaacaacagcagcaacagcatcaacagcagcagcaacaccagcagcagcaacaacagcagcagcaacagcatcaaCAGCATCAAGACATTTCCGGGGCGACTGTTATGGAAATCGATCCGAGTAATATAAAACATGAGCCCGGAATGATTATCACACCGGAAATTGTCACCATGATGGCAACGGGTCATATGGataTATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCTCACTATACAAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCTTTAAACAGCGCACTGGATGCATTACGTACTGGTCAGATATCCGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACATTATATAAAATTGCACGACGTGAGGGTATACGACTAGCGGCACCATTTAATGCGGCGCCCACAACATGGACGCCCGAAGATCTAGAACGTGCATTGGAAGCAATCCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAACAGgcaCACTTTACGGCCGCTGTAAACGTGAAGGTATTGAGTTGTCGCGCTCAAATCCAACACCATGGTCAGAGGATGCTATGAATGAAGCATTGAATTCAGTcagGGTTGGACAAATGTCTATCAATCAAGCGGCTATTCATTATAACCTTCCCTATAGTTCGCTGTACGGTCGTTTCAAACGCGGCAAATACGACATTGCCAATACGAGTGCATCGTCAATCAATAACACATCAGGCAACACAAGCGGAAGCATTGAAATAATTGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAATACCAATTCAGTCCAGCGCCGCAGTCTAATCATcaaacccaacaacaacaacagcagcagcaacaacaacagcaacaacaacagcagcaacagcaacaacatcaacaacaccaacaaccacAACAGCAACACATCCATCAACACGTTGTAcacattcaacaacaacaaacaccacaacatcatcatcaacaacaacatatCCAACAACAAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACAGATTTATCACCATCACAGTACCCCCGAGAGGAGTTGA
- Protein Sequence
- MQIPMGLLRTAEQLKIKGLCETAESVDDISEAAQATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANLNNNNLNSNINAVVAAPTTATTTPQLRKSRVRKRSKSPDTNQQQQQQQQQQQQQHHQQQQQHQHHQQQQQQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQQSSEDSDSDNKPSAQKICKTEAGNSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQQQHHHQQQQQQLHAQALSQQGQSQQQQQQQQQQQQQQHQQQQQHQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQYQFSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQHQQHQQPQQQHIHQHVVHIQQQQTPQHHHQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01542127;
- 80% Identity
- -