Cran013835.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:19778955-19797967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-11 8.9e-08 32.0 0.0 1 38 539 577 539 582 0.89 2 4 2.6e-13 2.8e-10 40.0 0.1 2 39 594 631 593 634 0.94 3 4 7.9e-18 8.5e-15 54.5 0.0 1 45 648 693 648 693 0.98 4 4 3.7e-19 4e-16 58.8 0.0 1 42 700 742 700 745 0.96
Sequence Information
- Coding Sequence
- ATGGCCCATATGGACTGCTTTTCAGAAGATTGTTTTATACGCAAGGCACATTTCGCGGCGGTTTCCTTTAGGTAcaggtctattggaatcaggGCGATATCAAGGGCTGCAATTTCAAAGACTGCATTGGATCTTGGTAAGTTCCTTGAGGGTCTTCTGCGGACAGCTGAACAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAagtgttgatgatatctcagaGGCGGCAACAGCAACCATCACTGTTTCAGAGAATATAACACAAGCGGTTGTTGGAAATATAGTGAATCCAACACAGGGTAATGCAATAGTTACAACACACACAATTGCAAACAACACAAATACGCATACAACAAcagcaaatttaaataataacaataacattAATTCAAATATTAATGCTATAGTTACACCGACAACGGCTACAACTACGCCGCAACTAAGAAAATCTCGGGTCAGAAAACGTTCAAAGTCACCGGATGcgaatcaacaacaacaacaacaacatcaacagcatcagcaacagcaacatcaacaacaacaacagcaacagcagcagcaacaacaacacaatcaACACCATCAACAGCAAGCAATATTAGGTCAAAATCTAAATACAGCGGCTATAGTTAGCCTGCAACAAACGTCGTCGGGTAGCTATATACCAGTCTCTGGGGGTCAAACGATAACGACGACAGCTGTTAGCCAACAAAACTCTGAGGATTCCGATTCGGATAATAAGCCTAGTGCTCAGAAAATTTGCAAAACCGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaacgGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTCGCACCTGAACCACCAGCACCATCAGCCACGCCTGTTACTGTGACGGAACATGTAGACTTGTCGTGCAATCCCAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAATCGCCCATGCATACGATCCACCATCAATCATCGACGGGCGATGAGAGTAACTCCAATCTAATTCAGCATATAAAGAGTGAAGTTATTGAGGTTAAacaacagcatcatcatcagcaacagcaacaacaacagcaattgCATGCGCAAGCTTTATCCCAGCAAGGACAAtctcagcaacagcaacaacatcaacagcaacagcagcaacaacaccaacagcagcagcaacaacaacaacagcagcaacaacagcatcagcaaCATCAAGATATTTCCGGAGCAACTGTTATGGAAATCGATCCGAGTAATATCAAGCATGAACCAGGAATGATTATCACACCGGAAATTGTTACCATGATGGCAACGGGTCATATggaTATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGAGGCATTACGAACCGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACCTTGTATAAGATAGCCAGACGCGAGGGTATACGACTGGCAGCACCATTTAATGCAGCGCCAACAACATGGACGCCTGAAGATTTAGAACGTGCTCTGGAAGCGATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTTCTGAATTCGGTATACCAACAGgcACACTTTATGGCCGCTGCAAGCGTGAGGGTATTGAATTATCACGCTCAAATCCGACACCATGGTCAGAGGATGCTATGAATGAAGCATTAAATTCTGTTAGaGTTGGACAAATGTCTATCAATCAAGCGGCTATTCACTACAACCTTCCCTACAGTTCCCTTTATGGACGATTCAAACGTGGCAAGTATGACATTGCCAACACGAGTGCATCGTCGATTAATAACACATCGGGCAACACAAGCGGAAGTATTGAAATAATTGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAATTCCAATATAGTCCAGCGCCGCAATCTAATCATCAAacccaacaacagcaacaacaacagcagcaacaacaacaacaacagcagcaacaacaacaacagcagcaacatcaacaacaccaaccacaaccacaacaacacatTCATCAGCATGTTGTACacattcaacaacaacaaactccacaacatcatcatcagcaacaacaacaacaacaacatatcCAACAACAAGATGTTGTTACCTCAACAAGTCAAGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCACCACAGCACCCCCGAGAGAAGTTGa
- Protein Sequence
- MAHMDCFSEDCFIRKAHFAAVSFRYRSIGIRAISRAAISKTALDLGKFLEGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNPTQGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAIVTPTTATTTPQLRKSRVRKRSKSPDANQQQQQQHQQHQQQQHQQQQQQQQQQQQHNQHHQQQAILGQNLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQNSEDSDSDNKPSAQKICKTEAGNSPTSNNGSVTVAQGTAIVTQIVVRDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQHHHQQQQQQQQLHAQALSQQGQSQQQQQHQQQQQQQHQQQQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQHQQHQPQPQQHIHQHVVHIQQQQTPQHHHQQQQQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01542127;
- 80% Identity
- -