Llat017542.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- -
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010000387.1:152791-170265[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-10 1.8e-07 32.1 0.0 1 38 531 569 531 574 0.89 2 4 5.9e-13 5.7e-10 40.1 0.1 2 39 586 623 585 626 0.94 3 4 1.8e-17 1.7e-14 54.5 0.0 1 45 640 685 640 685 0.98 4 4 4.1e-19 4e-16 59.8 0.0 1 44 692 736 692 737 0.96
Sequence Information
- Coding Sequence
- ATGCGAAATTATACAAGTGCCAGTAATTGGAGATACTACAACAACAAAACTGTAGCTGAAGCGGCGGCGAACATGTTACTAGCTCTAGCTAGCTACGTGGTCGGGTGGTTTGCTGGTTGTGTGTGGGATGAGGGTCTTCTGCGGACCGCTGAGCAGTTGAAAATCAAAGGGCTTTGCGAAACAGCCGAAAGTGTTGATGAGGCAGAAGCAGCAACAGCCACAATCACACTATCAGAAAATATAACACAAACGGTTGTTGGAAATATTGTGAATTCATCACAGGGTAATGAAATAGTCACTACACACACAATTGAAAACAACACAAATACGCATACAACAACAGCAAATCTACAAAACAATAACAACAGTTTTAATTCAAATATTAATGCAATAGTTGGTACCCCAACGGCCACATCGAccccacaactgcgaaaatcacgtgtcagaaaacgttcaaagtctccggatacgaatcatcagcaacatcagcagcagcagcaacaacaacagcaccaacaccagcagcagcaccagcaacaacatcagcagcagcagcagcaacaccaacatcatcaacaacaaacaatattaagccagaatcttaatacagcggcaatagttagcctgcaacagacctcgtccggtaattatataccggtttcgggtggccagacgataaccacgacagctgttagcCAGCACAGCCCTGACGATTCGAAGTCGGATAAGCCAAGTGCTCAGAAAATTTGCAAAACTGAAACATCAAGCTCACCGACATCGAATAATGGCAGTGTAACTGTTGCGCCAGGAACAGCCATTGTAACACAAATCGTTGTAGCCCGAGACGTAAAAGATAATAAAAACATGACCAGTATAGGAATGGGAATGAATGGCGGTCTCCTCGGAGTACCAATGGGCTTCTTGGATTTTGCCCCCGAACCACCAGCACCATCGGCAACACCTGTAACAGTGACGGAGCACGTCGACTTGTCGTGTAATCCCAGTCAGGACACCAGAGATTTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAATCACCGATGCATACAATCCACCATCagtcgtcaactggcgacgagagcaattcaaatttaattcagcatattaagagtgaagtgattgaggtgaaacatcatcatcagcagcagcagttgcatgcgcagaccttatcacagcaaggacaatcacaacaacagcaacaccagcagcaacagcagcaacaccaacagcagcagcagcaacaacaacagcagcaacaacagcagcagcaacaacatcagcagcatcaagatatttctggagcaactgttatggaaattgatccgagcaatatcaaACACGAACCAGGGATGATTATCACACCGGAAATTGTTACAATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGTGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACAAATTTGGACCAACAGCAAGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGTTTGACGAAAGCCTCAGTGACGTATGGCATCCCATCGACAACATTGTGGCAACGAGCCCATCGCATGGGCATTGAAACACCCAAAAAAGAAGGCGGTACCAAATCATGGAATGAAGATTCATTAAACAGCGCACTTGAGGCATTAAGAACTGGTCAAATATCAGCTAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACATTATATAAAATTGCCCGACGTGAGGGTATAAGATTGGCGGCACCATTTAATGCAGCGCCAACAACATGGACGCCCGAAGACTTGGAGCGTGCATTGGAAGCAATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCAGAATTTGGTATACCAACAGGCACACTCTACGGTCGCTGTAAGCGAGAAGGTATTGAGCTATCCCGCTCTAATCCAACACCATGGTCAGAAGATGCTATGAATGAGGCATTGAATTCTGTCAGAGTGGGACAAATGTCTATAAATCAGGCAGCTATTCACTACAACCTTCCATATAGTTCCCTGTATGGCCGTTTTAAACGTGGCAAATATGATATATCGAATGCGAGTGCAACATCAATCAACAACACATCAGGCAACACAAGCGGAAGCATTGAAATAATTGAACATAGTCCAGAGAATTCGTTGCACATGTTTcagcaacagttccaatacagtccagcgccgcagtccaatcatcagactcaacaacaacaacaacagcagcaacaacagcagcaacaacaacagcaacaacaacatcagcaacaacaacaacaccaaccccaacagcaacaacacatccatcaacaagttgtacacattcaacaccaacaaacaccacaacaacaccatcatcaacaacaacatatccaacaacaAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACATATTTATCACAGCACCCCTGAGAGGAGTTGA
- Protein Sequence
- MRNYTSASNWRYYNNKTVAEAAANMLLALASYVVGWFAGCVWDEGLLRTAEQLKIKGLCETAESVDEAEAATATITLSENITQTVVGNIVNSSQGNEIVTTHTIENNTNTHTTTANLQNNNNSFNSNINAIVGTPTATSTPQLRKSRVRKRSKSPDTNHQQHQQQQQQQQHQHQQQHQQQHQQQQQQHQHHQQQTILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHSPDDSKSDKPSAQKICKTETSSSPTSNNGSVTVAPGTAIVTQIVVARDVKDNKNMTSIGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSQDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKHHHQQQQLHAQTLSQQGQSQQQQHQQQQQQHQQQQQQQQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQQQDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISNASATSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQHQQQQQHQPQQQQHIHQQVVHIQHQQTPQQHHHQQQHIQQQDVVTSTSQVHTQAGQIQHIYHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00693681;
- 80% Identity
- -