Xsyl003352.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- -
- Assembly
- GCA_905220385.1
- Location
- LR999957.1:33216031-33232590[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-11 1e-07 32.1 0.0 1 38 498 536 498 541 0.89 2 4 1.3e-13 3.2e-10 40.1 0.1 2 39 553 590 552 593 0.94 3 4 3.9e-18 9.8e-15 54.6 0.0 1 45 607 652 607 652 0.98 4 4 1.9e-19 4.6e-16 58.8 0.0 1 42 659 701 659 704 0.96
Sequence Information
- Coding Sequence
- ATGCAGATTCCTATGGGCCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGCTGATGATATATCAGagccagcaacagcaacaataacAGTTTCGGAGAATATAACACAAGCGGttgttggaaatattttgaatccaACACTGGGTAATGCAATAGTCACTACACACACAATTGCAAACAACACAAATACGCATACAACAACagcaaatttaaataataataataacattaaTTCAAATATTAATGCTGTAGTTGCACCAACAACGGCCACATCCACGCCGCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCTCCGGACACgaatcaacagcaacagcaacaacagcagcagcaacatcaacagcagcagcaacagcaacatcaacaacagcaacaacagcaacaacaacaacaacatcaacaccatcaacaacaacagcaagcaATATTAAGTCAAAATCTAAATACAGCGGCAATAGTTAGCCTACAACAGACGTCGTCAGGGAGTTATATACCAGTCTCTGGGGGTCAAACGATAACGACGACAGCTGTTAGCCAACAGAGCTCTGAAGACTCTGATTCGGATAAGCCAAGTGCTCAGAAAATTTGCAAAACTGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGcgacggaaaagaaaaaaacatgacCAGCTTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTCGCACCCGAACCACCAGCACCATCAGCCACGCCAGTAACTGTGACGGAACATGTTGACTTGTCGTGCAATCCCAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTAGATCAATCGCCCATGCATACGATCCACCATCAATCGTCTACGGGTGACGAGAGTAACTCCAATCTAATTCAGCATATTAAGAGCGAAGTGATTGAGGtgaaacaacagcaacagcatcatcatcagcagcaacaacagcagcaattgCATGCGCAAGCTTTATCCCAACAAGGACAAtctcagcaacaacaacagcagcagcagcaacaacaccaacagcagcagcaacaccaacagcagcaacaacagcagcaacagcatcaaCAGCATCAAGACATTTCCGGAGCAACTGTCATGGAAATCGATCCGAGTAATATTAAGCATGAACCAGGAATGATTATCACACCGGAAATTGTCACCATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGGGCTCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGAGGCATTACGTACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGGATTCCGTCCTCGACATTGTATAAAATTGCACGACGCGAGGGTATACGGTTGGCGGCACCATTTAATGCGGCGCCCACAACATGGACGCCGGAAGATTTAGAACGTGCATTAGAAGCAATTCGAGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAACAGgCACACTTTATGGTCGCTGTAAGCGGGAAGGCATTGAATTGTCCCGCTCAAATCCGACACCCTGGTCAGAGGATGCTATGAATGAAGCCTTGAATTCTGTTAGAGTTGGACAAATGTCTATAAATCAAGCGGCTATTCATTACAACCTTCCCTATAGTTCACTGTATGGTCGCTTCAAACGCGGCAAATACGACATTGCCAATACGAGTGCATCGTCGATTAATAACACATCGGGCAACACGAGCGGAAGCATTGAAATAATCGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAAacccaacagcaacaacaacagcagcagcagcagcaacaacaacagcaacagcagcagcagcaacaacaacagcaacatcaacaacatcagcAGCAACCACAGCAACACATCCATCAACACGTTGTACacattcaacaacaacaaacaccacaacatcatcatcaacaacaacaacatatcCAACAACAAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MQIPMGLLRTAEQLKIKGLCETAESADDISEPATATITVSENITQAVVGNILNPTLGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAVVAPTTATSTPQLRKSRVRKRSKSPDTNQQQQQQQQQQHQQQQQQQHQQQQQQQQQQQHQHHQQQQQAILSQNLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQSSEDSDSDKPSAQKICKTEAGNSPTSNNGSVTVAQGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQQQHHHQQQQQQQLHAQALSQQGQSQQQQQQQQQQHQQQQQHQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQQHIHQHVVHIQQQQTPQHHHQQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01522465; iTF_01521796; iTF_01520877; iTF_01223302; iTF_01116362; iTF_00976372; iTF_01299925; iTF_00310167; iTF_00670871; iTF_00991671; iTF_01044633; iTF_00312506; iTF_00389533;
- 80% Identity
- -