Bscu041011.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459115.1:23421616-23435859[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-10 2.1e-07 32.1 0.0 1 38 513 551 513 556 0.89 2 4 9.3e-13 6.6e-10 40.1 0.1 2 39 568 605 567 608 0.94 3 4 2.8e-17 2e-14 54.6 0.0 1 45 622 667 622 667 0.98 4 4 1.3e-18 9.5e-16 58.8 0.0 1 42 674 716 674 719 0.96
Sequence Information
- Coding Sequence
- ATGAGCAGTTGTAGCAGTGAACATGCCACTACTACTGGTACTGGCTATGGCGCTTGCTACGTGGTCGTTCGCTTTGCTGTCAAGGGGGGGCTTATCAAGGGGTATCGTGGGCGCTACTCATTCATCCAGAGACGAAGCTTCCATTTACATAGAAACGATGTGATGGGAAAAAATCCATTCCCttctaaaGGTCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAgaagcagcaacagcaaccATCACAGTGTCGGAGAATATAACACAGGCGGTTGTTGGAAATATAGTGAATCCAACACAGGTTGTACCAACAACGGCAACATCCACGCCGCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCCCCGGACAcgaatcaacaacaacaacaacaacagcaacaacaacatcaacaacaccaacagcagcaacatcaacaacaacaacaccatcaGCAAGCAATATTAAGTCAAAATCTAAATTCAGCGGCAATTGTTAGCCTGCAACAGACGTCGTCAGGCAGCTACATACCAGTCTCTGGTGGTCAAGCGATAACGACGACAGCTGTTAGCCAACAGAGCTCTGAGGACTCTGATTCGGATAATAAACCCAGTGctttaaaaatttgtaaaacCGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCCAACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGAATGGTGGTCTCCTTGGAGTACCAATGGCCTTCTTAGATTTCGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACCGTAACGGAACATGTCGACTTGTCGTGCAATCCCAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAATCGCCTATGCATACGATCCACCATCAGTCGTCTACGGGCGATGAGAGTAACTCCAATCTAATTCAGCATATTAAAAGTGAAGTTATTGAGGTTaaacagcaacagcatcatcatcaacagcagcaacaacaacaacagcagcagttgCATGCGCAAGCTTTATCCCAACAAGGCCAATCTcaacagcagcaacatcagcagcaacaccaacagcagcagcagcaacaacaacagcagcagcaacaacaacagcagcagcaacagcatcagCAGCAGCATGACATTTCCGGAGCAACCGTCATGGAAATCGACCCGAGTAACATTAAGCATGAACCAGGAATGATTATCACACCGGAAATTGTCACCATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGCTCCCCAAATGACAATAATGAGCCACACTATACAAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAAATTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTACGGTATCCCATCGACAACATTGTGGCAACGCGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGAGGCATTGCGAACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGGATTCCGTCCTCGACATTGTATAAGATTGCACGACGCGAGGGTATACGACTGGCGGCACCATTCAATGCGGCTCCCACAACATGGACGCCCGAGGATCTAGAACGTGCACTAGAAGCGATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTTCAGAATTTGGTATACCAACAGGCACACTTTATGGTCGATGCAAGCGTGAAGGTATTGAGTTATCACGCTCGAATCCGACACCATGGTCGGAGGATGCTATGAATGAAGCGTTGAACTCTGTTAGagttgGACAAATGTCTATCAATCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTATATGGCCGCTTTAAGCGCGGCAAATACGACATTGCCAACACGAGTGCATCGTCGATTAATAACACATCGGGCAATACAAGTGGAAGCATTGAAATAATCGAACATAGTCCAGAGAATTCGTTgcacatgtttcagcaacaatTCCAATATAGTCCAGCGCCGCAGTCTAATCATCAAAcccaacaacagcagcaacaacagcagcaacaacaacagcagcagcaacagcagcaacatcaaCAACACCAGCAGCAACCacaaccacaacaacaacacatCCATCAGCACGTTGTACAcatccaacaacaacaaacaccacaacatcatcatcaacaaCATATCCAACAACAAGATGTTGTCACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACAGATTTATCACCATCACAGCACCCCAGAGAGGAGTTGA
- Protein Sequence
- MSSCSSEHATTTGTGYGACYVVVRFAVKGGLIKGYRGRYSFIQRRSFHLHRNDVMGKNPFPSKGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNPTQVVPTTATSTPQLRKSRVRKRSKSPDTNQQQQQQQQQQHQQHQQQQHQQQQHHQQAILSQNLNSAAIVSLQQTSSGSYIPVSGGQAITTTAVSQQSSEDSDSDNKPSALKICKTEAGNSPTSNNGSVTVQQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMAFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQQHHHQQQQQQQQQQLHAQALSQQGQSQQQQHQQQHQQQQQQQQQQQQQQQQQQQHQQQHDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKNWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQHQQHQQQPQPQQQHIHQHVVHIQQQQTPQHHHQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00311726;
- 80% Identity
- -