Rcam023526.2
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000219.1:133563-165071[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 1.3e-07 32.1 0.0 1 38 524 562 524 567 0.89 2 4 5.1e-13 4e-10 40.1 0.1 2 39 579 616 578 619 0.94 3 4 1.6e-17 1.2e-14 54.6 0.0 1 45 633 678 633 678 0.98 4 4 7.3e-19 5.7e-16 58.8 0.0 1 42 685 727 685 730 0.96
Sequence Information
- Coding Sequence
- ATGCATGAATTTCGCGGAATAACTTTCAAAGAGAAGAGTAGGTTTATGGTGAAGGCAGATGACGATGATGCGAAAACTGGAAGCAGGGGTGGCAGCAAGGGTCTCCTAAGGACAGCCGAACAATTGAAAATCAAAGGCCTTTGCGAAACAGCGGAAAGTGTTGATGATATCTCAGAGGCGGCAACAGCGACCATTACTGTTTCGGAGAATATTACACAGGCGGTTGTTGGGAATATTGTGAATGCAACACAGGGTAATGCAATAGTTACAACACACacaattgcaaacaacacaaatacgcatacaacaacagcaaacataaacaataacaataatattaattcaaatattaacgctgtagttgcaccaacggctacatccacgccccaattacgaaaatctcgggtcagaaagcgttcaaagtctccggatgcgaatcagcaacagcatcaacagcagcaacaacagcaacaacaacaacagcagcaacatcaacaacaacagcaacaacaacaacagcagcaacatcaacaacagcaacagcaacaccatcaacaagcaatattaagtcaaaatcttaacacagcggcaatagtaagtctgcaacagacatcatccggtagttatataccagtatctgggggtcaaacgataacgacgacagctgttagccaacaaAACTCTGAGGACTCGGATTCGGATAAGCCAACTTCACAGAAAATTTGCAAAACCGAAGTGTGCCACTCGCCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGCACAGCAATTGTAACACAAATCGTAGTCGCACGAGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGAACGGCGGTCTCCTTGGAGTACCAATGGGCTTCTTAGATTTCGCACCAGAACCACCAGCACCATCAGCCACCCCTGTTACTGTGACGGAACATGTCGACTTGTCGTGCAATCCCAGTACCGATACCCGAGACCTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAGTCGCCGATGCATGCGATCCACCATCAGTCGTCCACTGGCGATGAGAGTAACTCTAATCTAATTCAGCACATTAAGAGTGAAGTGATTGAGGTGaaacaacagcaacatcatcatcagcaattacatgcgcaagctttatcccagcaaggacaatctcaacaacaacaacagcagcagcaacaacaacagcaacatcaacaacaacagcagcaacagcagcaacaccagcagcagcagcaacaacagcatcagcagcatcaagacatttccggggcaactgtcatggaaattgatacgagcaatatcaagcatgagcCAGGAATGATTATCACGCCGGAAATTGTTACAATGATGGCAACTGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACCAACTTGGACCAACCGCATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCTCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCGTGGAATGAAGATTCACTGAACAGCGCTCTGGAGGCATTACGAACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTATAAGATTGCACGCCGCGAGGGCATACGACTGGCGGCACCATTTAATGCGGCGCCCACAACATGGACACCCGAGGATTTAGAGCGAGCATTGGAGGCAATTCGTGCAGGTCATACGTCCGTCCAAAAGGCTAGCTCAGAGTTTGGTATACCAACAGGCACGCTATATGGTCGATGCAAGCGGGAAGGTATTGAGTTGTCACGCTCGAATCCGACTCCCTGGTCGGAGGATGCTATGAATGAAGCATTAAATTCTGTTAGAGTTGGACAAATGTCTATCAACCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGCAAGTATGACATTGCCAACACGAGTGCATCGTCGATCAACAACACATCGGGCAATACTAGCGGAAGCATTGAAATAATCGAACATAGTCCAGAGAATTCGttgcacatgtttcagcaacagttccaatacagtccagcgccgcagtctaatcaccagactcaacagcagcagcaacaacaacaacaacaacaacaacagcagcaacaacaacaacaacagcaacaacatcaacaacaccaacagcaaccacaacagcaacacatccatcaacaccaacatatccaacaacaagatgttgtcacctcaacaaGTCAAGTCCACACCCAAGCTGGACAGATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MHEFRGITFKEKSRFMVKADDDDAKTGSRGGSKGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANINNNNNINSNINAVVAPTATSTPQLRKSRVRKRSKSPDANQQQHQQQQQQQQQQQQQHQQQQQQQQQQQHQQQQQQHHQQAILSQNLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQNSEDSDSDKPTSQKICKTEVCHSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHAIHHQSSTGDESNSNLIQHIKSEVIEVKQQQHHHQQLHAQALSQQGQSQQQQQQQQQQQQHQQQQQQQQQHQQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQQQHIHQHQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01542127;
- 80% Identity
- -