Rros020915.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- lolal
- Assembly
- GCA_949824845.1
- Location
- OX463758.1:47375657-47464744[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-10 1.2e-07 32.0 0.0 1 38 564 602 564 607 0.89 2 4 8.9e-13 3.8e-10 40.0 0.1 2 39 619 656 618 659 0.94 3 4 2.7e-17 1.2e-14 54.5 0.0 1 45 673 718 673 718 0.98 4 4 1.3e-18 5.4e-16 58.7 0.0 1 42 725 767 725 770 0.96
Sequence Information
- Coding Sequence
- ATGGCGGCACGAAGTCATCAATATTTCAGTCTCAGATGGAATAATTATCAGAACACAATGACCTCCGTGTTCCAGCAACTGCGTGAGGATTTATCATTTGTCGATGTCACATTATCATGTGAAAATGGATCACTTAAAGCTCACAAGGTCGTCTTGTCGGCATGTTCGtcgtattttcaaaaattactaCTGGAGAATCCGTGCAAGCATCCAACTATCATACTGCCGGGTGAAATAATATTTACAGATCTTAAAACGATCATTGATTTCGTTTATCGCGGTGAGATAGATGTCACCGAATCTGAATTACAGggTCTTCTAAGGACAGCCGAACAATTGAAAATCAAAGGTCTTTGCGAAACAGCAGAAAGTGTTGATGATATCTCAGAGGCGGCAACAGCAACCATCACTGTTTCGGAGAATATTACACAGGCGGTTGTTGGGAATATTGTGAATGCAACACAGGTTGCACCAACGGCCACATCCACGCCCCAATTACGAAAATCTCGGGTCAGAAAGCGTTCAAAGTCACCGGATGCGAATCAGCAAcagcatcaacagcaacaacaacaacagcagcaacatcaacaacaacaacaacagcagcagcagcaccaacagcagcaacagcaacaccatCAACAAGCAATATTAAGTCAAAATCTTAACACAGCGGCAATAGTTAGTCTGCAACAGACATCATCTGGAAGTTATATACCAGTATCTGGGGGTCAAACGATAACGACGACAGCTGTTAGTCAACAAAACTCTGAGGACTCGGATTCGGATAAGCCAACTTCACAGAAAATTTGCAAAACCGAAGTGTGCCACTCGCCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACACAAATCGTAGTCGCACGAGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaacgGCGGTCTCCTTGGAGTACCAATGGGCTTCTTAGACTTTGCCCCAGAACCACCAGCACCATCAGCCACACCTGTTACTGTGACGGAACATGTCGATTTGTCGTGCAATCCCAGTACCGATACCCGAGACCTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTTGATCAGTCGCCCATGCATGCGATCCACCATCAGTCGTCCACGGGCGACGAGAGTAACTCTAATCTAATTCAGCACATAAAGAGTGAAGTGATTGAGGTGAAACAACAgcaacatcatcatcagcaaTTACATGTGCAAGCTTTATCCCAGCAAGGACAatcgcaacaacaacaacaacagcaacaacagcagcagcagcaacagcagcaacaacaacaacagcagcaacaacatcagcagcaacaacaacaacaacagcaacaacaccagcagcagcaacaacagcatcaGCAGCATCAAGACATTTCCGGGGCAACTGTCATGGAAATTGATACGAGCAATATCAAGCATGAGCCAGGAATGATTATCACGCCGGAAATTGTTACAATGATGGCAACTGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACCAACTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCTCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCGTGGAATGAAGATTCACTGAACAGCGCTCTGGAGGCATTACGAACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTATAAGATTGCACGCCGCGAGGGCATACGACTGGCGGCACCATTTAATGCGGCGCCCACAACATGGACACCTGAGGATTTAGAGCGAGCATTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCAGAGTTTGGTATACCAACAGGCACGCTTTATGGTCGATGCAAGCGGGAAGGTATTGAGTTGTCACGCTCTAATCCGACTCCCTGGTCGGAGGATGCTATGAATGAAGCATTGAATTCTGTTAGAGTTGGGCAAATGTCTATCAACCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGCAAGTATGACATTGCCAACACGAGTGCATCGTCCATCAACAACACATCGGGCAACACTAGCGGAAGCATTGAAATAATCGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAGTTCCAATACAGTCCAGCGCCGCAGTCTAATCACCAGactcaacagcagcagcaacaacagcaacaacaacaacagcagcagcatcaacaacaccaACAGCAACCACAACAGCAACACATCCATCAACATGTTGTACACATTCAACAACAAACCCcacaacatcatcatcaacagcaacataTCCAACAACAAGATGTTGTCACCTCAACAAGTCAAGTCCACACTCAAGCTGGACAGATCCAACAGATCTATCACCATCACAGCACCCCTGAGAGGAGTtga
- Protein Sequence
- MAARSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCENGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGEIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQVAPTATSTPQLRKSRVRKRSKSPDANQQQHQQQQQQQQQHQQQQQQQQQHQQQQQQHHQQAILSQNLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQNSEDSDSDKPTSQKICKTEVCHSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHAIHHQSSTGDESNSNLIQHIKSEVIEVKQQQHHHQQLHVQALSQQGQSQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQHQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQHQQHQQQPQQQHIHQHVVHIQQQTPQHHHQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00311726;
- 80% Identity
- iTF_01301007;