Pper033517.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:209812518-209833617[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-10 2.3e-07 32.1 0.0 1 38 511 549 511 554 0.89 2 4 7.4e-13 7.2e-10 40.1 0.1 2 39 566 603 565 606 0.94 3 4 2.2e-17 2.2e-14 54.6 0.0 1 45 620 665 620 665 0.98 4 4 1.1e-18 1e-15 58.8 0.0 1 42 672 714 672 717 0.96
Sequence Information
- Coding Sequence
- ATGAAATGTCTTTTTCGTCTAATGATCCCTGATATTCCACAATCATGGGTACTTCATGGCCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAgaggcagcaacagcaaccaTCACAGTATCGGAGAATATTACGCAGGCGGTTGTTGGAAATATAGTGAATCCAACACAGGGTAATGCAATAGTAACTACACACACAATTGCAAACAACACAAATACGCATACACCAAcagcaaatttaaataataataataacattaattcaaatattaatgCTGTAGTTGTACCAACAACGGCTACATCTACGCCGCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAATCCCCAGACacaaatcaacaacaacaacaacagcagcagcagcaacaacaacaacaacatcaacagcagcagcaacatcaacaacaacaacatcaacaccatcagcaacaacagcaagcaATATTAAGTCAAAATCTTAACACAGCGGCAATAGTTAGCCTGCAACAGACGTCTTCGGGCAGTTATATACCTGTCTCTGGGGGACAAACGATAACGACGACAGCTGTTAGCCAACAGGGCTCTGAGGACTCTGATTCGGATAATAAGCCAAGCGCTCAGAAAATTTGCAAAACCGAAGCGGGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaACGGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTCGCACCCGAACCACCAGCACCATCAGCTACGCCTGTAACCGTGACGGAGCATGTCGATTTGTCATGCAATCCCAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTCGATCAATCGCCCATGCATACGATCCACCATCAGTCGTCTACGGGCGATGAGAGTAATTCCAATCTAATTCAGCATATTAAGAGCGAAGTGATTGAGGTGAAGCAacagcatcatcatcagcagcaacagcaacaacaacagcaattgCATGCGCAAGCTTTATCCCAGCAAGGACAAtctcaacagcagcaacaacagcaacagcagcaacaacatcagcagcagcagcagcaacaacaccaacagcagcagcaacaacagcagcagcatcaacAGCATCAAGACATTTCCGGAGCAACAGTCATGGAAATCGATCCGAGTAATATTAAACATGAACCAGGAATGATTATCACACCGGAAATAGTAACAATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGAGGCATTGCGTACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGGATTCCGTCCTCGACATTGTATAAGATTGCACGACGTGAGGGCATACGGCTGGCGGCTCCATTTAATGCGGCGCCGACAACATGGACGCCCGAAGATTTAGAACGTGCATTAGAAGCGATTCGTGCCGGTCATACGTCCGTCCAAAAAGCCAGCTCTGAATTTGGTATACCAACAGGTACTCTTTATGGTCGCTGTAAACGTGAGGGTATTGAGTTGTCCCGCTCAAATCCGACACCATGGTCAGAGGATGCTATGAATGAAGCATTAAATTCTGTTAGAGTCGGACAAATGTCTATCAATCAAGCGGCTATTCATTACAACCTTCCCTATAGTTCCCTGTATGGCCGCTTTAAACGCGGAAAATACGACATTGCCAATACGAGTGCATCGTCGATAAATAACACATCGGGTAATACAAGCGGTAGCATTGAAATAATCGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAATTCCAATATAGTCCAGCGCCGCAATCTAATCATCAaacccaacaacaacaacaacaacaacagcaacaacaacaacagcagcagcaacaacaacaacaacaacaacagcaacatcaacaacaacaccaacagcaaccACAACAACACATCCATCAACACGTTGTACacattcaacaacaacaaacaccacaacatcatcatcaacaacaacaacagcaacaacatatCCAACAACAAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACAGATCTATCATCATCACAGCACCCCCGAGAGGAGTTGa
- Protein Sequence
- MKCLFRLMIPDIPQSWVLHGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNPTQGNAIVTTHTIANNTNTHTPTANLNNNNNINSNINAVVVPTTATSTPQLRKSRVRKRSKSPDTNQQQQQQQQQQQQQQHQQQQQHQQQQHQHHQQQQQAILSQNLNTAAIVSLQQTSSGSYIPVSGGQTITTTAVSQQGSEDSDSDNKPSAQKICKTEAGNSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQHHHQQQQQQQQQLHAQALSQQGQSQQQQQQQQQQQHQQQQQQQHQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQQHQQQPQQHIHQHVVHIQQQQTPQHHHQQQQQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_01542127;
- 80% Identity
- -