Svit021714.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:82527854-82545898[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-10 1.5e-07 32.1 0.0 1 38 535 573 535 578 0.89 2 4 6.1e-13 4.7e-10 40.1 0.1 2 39 590 627 589 630 0.94 3 4 1.8e-17 1.4e-14 54.5 0.0 1 45 644 689 644 689 0.98 4 4 4.2e-19 3.3e-16 59.8 0.0 1 44 696 740 696 741 0.96
Sequence Information
- Coding Sequence
- ATGGCCGCGCTGGTAGAGCAAGAGCAGCGACAGGCAGGAGCTACTTACCAATCGTATAATCGACAGAAACGACACAGTCAGACATTTGGACATTATTGCCCCGAGAACCAAGGGCTAGCTATATCAGGCGGGCCGGGTCTTCTTCGGACCGCTGAGCAGTTGAAAATTAAAGGGCTTTGCGAAACAGCCGAAAGTGTTGATGAGGCCGAAGCGGCAACAGCCACAATAACATTATCAGAAAATATAACACAAACGGTTGTTGGAAACATTGTTAATTCATCACAGGGTAATGAAATAGTCACTACACACACAAttgaaaacaacacaaatacGCATGCAACAACAGCAAATctgcaaaataataacaatagcaTTAATTCAATTAATGCAATAGTTGGTACCCCAACGGCTACATCGACTCCACAATTGCGAAAATCACGGGTCAGAAAGCGTTCAAAGTCTCCGGATACGAATCATcagcaacatcagcagcagcaacaacaacagcagcagcaacaccaacagcagcaccagcaacaacagcatcagcaacaacaacagcaccaaCATCATCAACAGCAAACAATATTAGGTCAGAATCTTAATACAGCGGCAATAGTAAGCCTGCAACAGACCTCTTCTGGTAATTATATACCAGTATCGGGAGGTCAGACGATAACGACGACAGCTGTTAGCCAACACAGCCCGGAAGATTCGAATTCGGATAAGCCGAGTGCTCAGAAAATCTGCAAAACTGAATCATCAAGCTCACCGACATCGAATAATGGCAGTGTAACTGTTGCCCCAGGAACAGCCATTGTAACACAAATCGTTGTAGCCCGAGACGttaaagataataaaaacaTGACCAGTATAGGAATGGGAAtgaaCGGCGGTCTCCTCGGAGTACCAATGGGATTCTTAGATTTTGCACCCGAACCACCAGCACCATCAGCAACCCCTGTAACAGTGACGGAGCACGTCGATTTGTCCTGTAATCCAAATCAGGACACCAGAGATTTATCAAATCCCACCGAAGCGCTCGACATTGACAATCATTTAGCACAACATATGATCCAACGGCTCGATCAATCACCGATGCATAAATTCCACCATCAATCGTCAACTGGCGATGAGagtaattcaaatttaatacaGCATATTAAGAGTGAAGTGATCGAGGTgaagcatcatcatcagcaacaacaacagcagttGCATGCGCAGACCTTATCACAGCAAGGACAATCACAACAGCAGCAAcaccagcagcaacagcagcagcaacaccaacagcagcagcaacaacagcagcagcaacaacaacaacagcagcagcaacaacatcagcagcatCAAGATATTTCTGGGGCAACTGTTATGGAAATTGATCCAAGCAATATCAAACACGAACCAGGAATGATTATCACACCGGAAATAGTTACAATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGTGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTACACAAATTTGGACCAACAGCAAGATATCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGTTTGACGAAAGCCTCAGTGACGTATGGCATCCCATCGACAACGTTGTGGCAACGTGCCCATCGCATGGGCATCGAAACACCCAAAAAAGAAGGCGGTACCAAATCATGGAATGAAGATTCATTAAACAGCGCACTTGAGGCATTAAGAACTGGTCAAATATCAGCTAATAAAGCCTCGAAGGCATATGGTATTCCGTCCTCGACATTATATAAAATTGCCCGACGTGAGGGTATAAGATTGGCAGCACCATTCAATGCAGCACCAACAACATGGACGCCTGAAGATTTAGAGCGTGCATTAGAAGCAATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCAGAATTTGGTATACCAACAGgcACACTATACGGTCGCTGTAAACGAGAAGGTATTGAGCTGTCTCGCTCAAATCCAACACCATGGTCAGAAGATGCTATGAATGAGGCATTGAATTCTGTTAGggTGGGACAAATGTCCATAAATCAGGCGGCTATTCACTACAACCTTCCATATAGTTCCCTGTATGGCCGTTTCAAACGTGGCAAATATGATATATCAAATGCGAGTGCAACAACAATCAATAACACATCAGGCAACACAAGCGGAAGCATTGAAATAATTGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAGTTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAgactcaacaacaacaacagcaacaacaacagcagcagcaacaacaacaacaacagcagcagcagcaacaacaacaacatcaacaacaccaaccccaacaacaacaacaacacatccATCAACAAGTTGTACACATTCAACACCAACAAACACcacaacaacaccatcatcaacaacaacatatCCAACAACAAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACATATTTATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MAALVEQEQRQAGATYQSYNRQKRHSQTFGHYCPENQGLAISGGPGLLRTAEQLKIKGLCETAESVDEAEAATATITLSENITQTVVGNIVNSSQGNEIVTTHTIENNTNTHATTANLQNNNNSINSINAIVGTPTATSTPQLRKSRVRKRSKSPDTNHQQHQQQQQQQQQQHQQQHQQQQHQQQQQHQHHQQQTILGQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHSPEDSNSDKPSAQKICKTESSSSPTSNNGSVTVAPGTAIVTQIVVARDVKDNKNMTSIGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNQDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHKFHHQSSTGDESNSNLIQHIKSEVIEVKHHHQQQQQQLHAQTLSQQGQSQQQQHQQQQQQQHQQQQQQQQQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQQQDIKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDISNASATTINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQHQPQQQQQHIHQQVVHIQHQQTPQQHHHQQQHIQQQDVVTSTSQVHTQAGQIQHIYHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00693681;
- 80% Identity
- -