Xseg009082.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:110633761-110641510[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-11 6.8e-08 32.1 0.0 1 38 510 548 510 553 0.89 2 4 1.2e-13 2.1e-10 40.1 0.1 2 39 565 602 564 605 0.94 3 4 3.6e-18 6.5e-15 54.6 0.0 1 45 619 664 619 664 0.98 4 4 1.7e-19 3.1e-16 58.8 0.0 1 42 671 713 671 716 0.96
Sequence Information
- Coding Sequence
- ATggacgatgaagatgatgaagatgatgatgatgatgatagaGGGCTTCTGCGGACAGCTGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGCCGGCAACAGCAACCATCACAGTTTCGGAGAATATAACACAGGCGGTTGTTGGGAATATATTAAATCCAACACAGGGTAATGCAATAGTCACTACACACACAATTGCAAACAACACAAATACGCATACAACAAcagcaaatttaaataataataataacattaaTTCAAATATTAATGCTGTAGTTGCACCAACAACGGCCACATCTACGCCGCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCTCCGGACACgaatcaacaacagcaacagcaacaacagcagcagcaacatcaacagcaacagcaacaccaacaacaacagcaacatcaacaccatcagcagcagcaacaacaacaacaacaacaacagcaagcaATATTAAGTCAAAATCTAAGTACAGCGGCAATTGTTAGCCTACAACAGACGTCGTCCGGGAGTTACATACCAGTCTCTGGGGGTCAAACGATAACGACGACAGCTGTTAGCCTACAGAGCTCGGAGGACTCTGATTCGGAGAATAAGCCAAGTGctcagaaaatttgcaaaactGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTGACACAAATCGTAGTAGCACGCgacggaaaagaaaaaaacatgacCAGCTTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGCTTTTTAGATTTCGCACCCGAACCACCAGCACCATCAGCCACGCCAGTAACAGTGACGGAACATGTTGACCTATCTTGCAATCCCAGTACAGATACCAGAGACTTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACATATGATCCAACGGCTAGATCAATCGCCGATGCATACGATCCACCATCAGTCGTCGACGGGTGACGAGAGTAACTCCAATCTAATTCAGCATATTAAGAGTGAAGTGATTGAGGtgaaacaacagcaacagcatcatcatcagcagcagcagcaacagcagcaattgCATGCCCAAGCTTTATCCCAGCAAGGACAAtctcaacagcagcaacaacagcaacagcagcaacaccaacagcagcagcaacaccaacaacagcagcagcagcaacagcagcaacatcaacagCATCAGGACATTTCCGGAGCAACTGTCATGGAAATCGATCCGAGTAATATCAAGCATGAACCAGGAATGATTATCACACCGGAAATTGTCACGATGATGGCAACGGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAACGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGTATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGAGGCATTACGTACTGGTCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGGATTCCGTCCTCGACATTGTATAAAATTGCACGACGAGAAGGTATACGGCTGGCGGCACCATTTAATGCGGCGCCCACAACATGGACGCCGGAAGATTTAGAACGTGCATTGGAAGCGATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGCTCTGAATTTGGTATACCAACAGGCACACTTTACGGTCGCTGCAAGCGGGAAGGCATTGAGTTATCTCGCTCAAATCCCACACCATGGTCAGAGGATGCTATGAATGAAGCATTGAATTCAGTTAGAGTTGGACAGATGTCTATCAATCAAGCGGCTATTCATTACAACCTTCCCTATAGTTCACTGTATGGTCGCTTTAAACGCGGCAAATATGACATTGCCAATACGAGTGCATCGTCGATTAATAACACATCGGGCAACACGAGCGGAAGTATTGAAATAATCGAACATAGTCCAGAGAATTCGTTGCACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAAacccaacagcaacaacaacagcagcagcaacaacaacagcaacaacaacagcagcagcaacaacaacagcaacatcaacaacatcagcagcagcaaccacaGCAACACATCCATCAACACGTTGTAcacattcaacaacaacaaacaccacaacatcatcatcaacaacaacatatCCAACAACAAGATGTTGTTACCTCAACAAGTCAGGTTCATACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MDDEDDEDDDDDDRGLLRTAEQLKIKGLCETAESVDDISEPATATITVSENITQAVVGNILNPTQGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAVVAPTTATSTPQLRKSRVRKRSKSPDTNQQQQQQQQQQQHQQQQQHQQQQQHQHHQQQQQQQQQQQQAILSQNLSTAAIVSLQQTSSGSYIPVSGGQTITTTAVSLQSSEDSDSENKPSAQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKEKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQQQQHHHQQQQQQQQLHAQALSQQGQSQQQQQQQQQQHQQQQQHQQQQQQQQQQHQQHQDISGATVMEIDPSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQQPQQHIHQHVVHIQQQQTPQHHHQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00693681;
- 80% Identity
- -