Cpag009932.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000030.1:17450667-17464354[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-11 7.2e-08 32.3 0.0 1 38 451 489 451 494 0.89 2 4 2.4e-13 2.3e-10 40.3 0.1 2 39 506 543 505 546 0.94 3 4 7.4e-18 6.9e-15 54.7 0.0 1 45 560 605 560 605 0.98 4 4 3.5e-19 3.2e-16 59.0 0.0 1 42 612 654 612 657 0.96
Sequence Information
- Coding Sequence
- ATGCAGATTCCTATGGGTCTTCTACGGACAGCCGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGACATCTCAGAGGCGGCCACAGCGACCATCACAGTTTCGGAGAATATAACACAGGCGGTTGTTGGGAATATTGTGAATGCAACACAGGTTGCACCGACAACGGCAACGTCCACGCCCCAGCTGCGAAAATCTCGGGTCAGAAAACGCTCAAAGTCGCCGGATACAAAtctgcaacaacagcagcagcaacatcaacaacaacaacagcagcagcaccaacaacagcaacaacaccaacaacagcagcagcagcaccatcaACAAGCAATATTAAGTCAGAATCTTAACACAGCGGCAATAGTTAGCCTGCAACAGACATCATCGGGCAACTATATACCTGTCTCTGGGGGTCAGACGATAACGACGACTGCTGTTAGCCAACATAACTCCGAGGATTCGGATTCCGATAAGCCAACATCGCAGAAGATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACGCAAATTGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaacGGCGGTCTCCTCGGAGTACCAATGGGATTCTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACCGTGACGGAACATGTCGACTTATCCTGCAATCCCAGCACAGATACCCGAGATCTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACACATGATCCAACGACTTGATCAATCGCCCATGCATACGATTCACCATCAGTCGTCTACGGGCGACGAGAGTAACTCCAATCTGATTCAGCATATTAAGAGTGAAGTGATTGAGGTGAAacagcatcatcatcaacagcagcagttGCATGCGCAAGCTTTATCCCAGCAAGGACAatctcaacaacaacagcaacaacagcatcaacagcagcagcaacaacagcaacaccaacaacagcaacaacaacaacagcagcagcagcatcaacaacaTCAAGACATTTCCGGTGCAACTGTCATGGAAATTGACACGAGTAACATTAAGCATGAACCGGGCATGATCATCACACCGGAAATTGTTACAATGATGGCAACTGGTCATATGGATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACGCCCAAAAAGGAGGGCGGTACCAAATCATGGAACGAAGATTCATTAAACAGCGCTCTGGAGGCTTTGCGAACTGGCCAAATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTATACAAGATTGCACGACGCGAGGGTATACGACTGGCGGCACCATTCAATGCGGCGCCTACAACATGGACGCCCGAAGATTTAGAGCGTGCTCTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGTTCTGAATTTGGTATACCAacagGCACACTTTATGGTCGTTGTAAGCGTGAGGGTATTGAATTATCGCGCTCCAATCCGACGCCATGGTCGGAGGATGCTATGAATGAGGCGTTGAATTCTGTTAGAGTCGGACAGATGTCCATCAATCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGCAAATACGACATTGCCAACACGAGCGCATCGTCGATTAACAACACATCGGGCAACACAAGCGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAaactcaacaacaacagcaacagcagcagcagcaacaacagcagcaacagcagcagcagcaacaacaacaacaacagcagcagcatcaacaacaccaacagcaaCCCCAACACATCCATCAACATCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGa
- Protein Sequence
- MQIPMGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQVAPTTATSTPQLRKSRVRKRSKSPDTNLQQQQQQHQQQQQQQHQQQQQHQQQQQQHHQQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHNSEDSDSDKPTSQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKSEVIEVKQHHHQQQQLHAQALSQQGQSQQQQQQQHQQQQQQQQHQQQQQQQQQQQHQQHQDISGATVMEIDTSNIKHEPGMIITPEIVTMMATGHMDIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQHIHQHQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314183;
- 90% Identity
- iTF_00240582; iTF_00314183; iTF_00313367; iTF_01300762; iTF_01301007;
- 80% Identity
- -