Alyc037771.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola lychnidis
Gene Symbol
-
Assembly
GCA_963680765.1
Location
OY796872.1:18467293-18470080[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0023 0.29 13.1 0.5 1 23 243 266 243 266 0.97
2 17 2e-05 0.0025 19.5 2.5 1 23 271 293 271 293 0.99
3 17 5.9 7.4e+02 2.3 0.2 2 23 297 318 297 318 0.84
4 17 0.0035 0.44 12.5 0.8 1 23 323 346 323 346 0.96
5 17 0.0018 0.23 13.4 0.6 2 23 407 429 406 429 0.95
6 17 0.00015 0.019 16.8 1.2 1 23 435 458 435 458 0.96
7 17 0.00098 0.12 14.2 0.3 3 21 463 481 461 482 0.94
8 17 0.0054 0.67 11.9 0.5 1 23 490 513 490 513 0.95
9 17 0.071 8.8 8.4 0.4 2 23 554 575 553 575 0.94
10 17 0.00035 0.043 15.7 2.3 1 23 581 603 581 603 0.97
11 17 0.0057 0.71 11.8 2.7 1 23 639 661 639 661 0.96
12 17 0.015 1.9 10.5 0.3 2 23 666 687 665 687 0.93
13 17 0.0056 0.7 11.8 2.3 2 23 716 738 715 738 0.96
14 17 0.00054 0.067 15.1 3.8 1 23 744 766 744 766 0.98
15 17 0.0022 0.28 13.1 4.1 2 23 773 794 772 794 0.96
16 17 7.7e-05 0.0096 17.7 1.2 1 23 800 823 800 823 0.96
17 17 0.32 40 6.3 1.3 2 23 829 851 828 851 0.95

Sequence Information

Coding Sequence
ATGGAGGAAATAGAGACAAAAGACATAGCTCCAGACCACTTAGAATGGATAAAACAGAAACTCAAGACAGTGTGGACGTCTCCCACGTTCTGCGGACTATGTCTGGAGAGCAGCGGCAACTTCTGTTCTGTTGACATGGAACTCGTTATCAGCCATCAGACATTCTCTAAATGTCTGCAGGATATACTGAACTATGTATTTAATGAAGATATTGAAAACTTCATGTCAAGTCCGCACTTATGTGACAGTTGTACCGAGAAGACAATACAATCTTATCTCTTTATACACAACACAAAACAACTGAACAAAATCCTTAACAACTGTATCTCAGACCTTGATTCCAAAGTAATTGACATCAACGCACAACTTGATGAATCAATGACATATGATACTGCCAACGTAATGATTGTCCTGGAAAATGATACTGAACTTTACAGAACAATCATTGATGTCAAGTCGATGACTGAAATTGTTCCAACTGCTACACCCATTGCAATGAAAGAACTAATGAATCCAAAGCCACCGCAACCAAAAGTCATTCAAATTGCCAAACCTCATAAACCCATAGTAATAAAAAAGGAAATAGAAAAACCTAAGGAAGTGAGACAAATCAAAGTAAAGAAAGCTATAAAAGCAGATGGAACTCCAAACATTAGTTTGAAAGAAGGTCACATTGTGATAAAGCCATTGACCTGTGTACGAACCTCAGCCCCCCGGTACAACACTTATGAATGCACTGATTGTCCAGATATTTTCACCACTTATAGATCCTTGAAGGAACATGAAAAAGTGAAGCATAAAAAGTCTGTTTACCGCTGCAAGTTATGCGACAAGATTTATAACACTCAGCAATATTTGAACATACATTACAAGACTCATTCTAGGGCTAGATGTAAGTTATGTCAAGTTATACTCCCAGAAGAGGATCTAATGGAACATTTGAGGACTCTTCATCCGAATTTAGTGTATCCTTGCAAGTTTTGCGACCTAGTCTACTACACCCAAGAGTCTTTGGATACACATTTCAAAATAAGCCACTTGGTCAACGACACAAGAGCTAAATCTCAGTGTGTCATGTGTCTAAAGAACTTTAGGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCGTGCTCAGAATGTTTTATCATGCCATGCGTTCACATTAAGTATTTAACTTCTTATAGAGAGCAGGTTTTGAGCcatgtgaataaaataaaatgcgtgGATTGCGACTATGTTACTCGGCGCAAAGAACATCTGATGGGTCACGCTAACAGAGAGCATTTGGACCACCATCCATTTACTTGTGCTGATTGTGGTCAACAGTTTTACACTAAGTTGAGTTTAAAAACACACATTATGCAATTCCATGAAGATCTATTTTGTCCTTACTGCGACTTTGAATTTAAAGACAGCAGAACTTTGATAACACATAGGAAAGCCTGCAAACTTGTTATACGGCCATTTCAATGTACCCACTGTGTTGCCTCATTCGACGTCGCGGAAGAGTTGACCAATCATGAGAACTTGAAACATAATGAAGGCGCTTTCGCTTGCACTCTTTGTAAAAGCAAATTCCTTCTTGAAATAGAACTGGAAGAACATCATGCGAGGGTTCACGGCGGAATACAATGCAAGAAAAGGAGAAAACACATTGAATGCTCTTTATGCAacattatgtttaaaaatataaaagaaatgcTTCAACATGAAAAGTTTCACAGAGAAGATGAAGTCTATCCATGCAAAGTATGCTCGAAAAAATTCAAATCGTTAAGTAAATTATATATTCACAATCAAAGGCACTATACCGAAAGAATTAAATGTTCTGGATGTAACAAAAGGGTAGCTGCATCATTCTACCCCCAACATGAGGTGAGGTGCCCGTATAAAAGAGATAAAACTTTGACCCATATCTGTGAAGTATGTGGCAAGTCCTTCCACTTGGAATCATTGCTACGTTTCCATCAAAGAATCCACTTGGATCCAAAGCCATGTCCTCGATGCAAAAAGGTTATCAAACCTTCAAGTTTAAAAAAGCATATGGAGCAAGTTCATGGAATTGGCACGATACAAGAATATGAAGACAACACTATTCTGGaaccaaagaaagaaaaagttgcATCAAGCAAGCCGTCAATTAAATGTAACATATGTGGACATGTAGTGAGAAAAAAATGTGACTTGGACGCTCATTTGAACCGATATCATCTGAAAATCAAGCCGTACGTCTGTCATATATGCAATAAAGACTTTTGTGGTAAAGTTCGACTGAAAGAACATATTACAACCCACACGAATGACAACAGTTGCTTTTGTTCTGTTTGTGGAGGGAAATTTGCAAACCGTGTGTGTTTGAAGATGCACATGAGAATGCATACTGGAGAAGCACCTTACCCCTGCGATCTCTGCGGACAAAGATTCAGGTCTTCTAGTATGATGAAGAGTCATAGAATAAAGAAACATATGGAGAAAACAGTTAGCTGTCCATTATGTGATAGTATGTTTTTCATGGCCAGAGATATGAGACATCACTTCAAGAAAGCTCATTGGAAGTTTAAGGATGGAAGACCGTTCGATCCTAAGGATGTTGAAGAGTTATCCGAGGAGTCATATTATCTTTTTGAAGATGGTAGATTGCCGAAACTATATAAAGATTAG
Protein Sequence
MEEIETKDIAPDHLEWIKQKLKTVWTSPTFCGLCLESSGNFCSVDMELVISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDLDSKVIDINAQLDESMTYDTANVMIVLENDTELYRTIIDVKSMTEIVPTATPIAMKELMNPKPPQPKVIQIAKPHKPIVIKKEIEKPKEVRQIKVKKAIKADGTPNISLKEGHIVIKPLTCVRTSAPRYNTYECTDCPDIFTTYRSLKEHEKVKHKKSVYRCKLCDKIYNTQQYLNIHYKTHSRARCKLCQVILPEEDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFRDAEMKKHKCKFSCSECFIMPCVHIKYLTSYREQVLSHVNKIKCVDCDYVTRRKEHLMGHANREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRPFQCTHCVASFDVAEELTNHENLKHNEGAFACTLCKSKFLLEIELEEHHARVHGGIQCKKRRKHIECSLCNIMFKNIKEMLQHEKFHREDEVYPCKVCSKKFKSLSKLYIHNQRHYTERIKCSGCNKRVAASFYPQHEVRCPYKRDKTLTHICEVCGKSFHLESLLRFHQRIHLDPKPCPRCKKVIKPSSLKKHMEQVHGIGTIQEYEDNTILEPKKEKVASSKPSIKCNICGHVVRKKCDLDAHLNRYHLKIKPYVCHICNKDFCGKVRLKEHITTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTVSCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFDPKDVEELSEESYYLFEDGRLPKLYKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01527625; iTF_00364302; iTF_00038096; iTF_00726802; iTF_00037174; iTF_01526397; iTF_00121735; iTF_00623427; iTF_00908259; iTF_00173828; iTF_00746116; iTF_01440644; iTF_00124837; iTF_00668102; iTF_00123656; iTF_01440424; iTF_00123887; iTF_00173553; iTF_00907352; iTF_00122009; iTF_00123003; iTF_00124571; iTF_00122748; iTF_00667837; iTF_00906495; iTF_00042918; iTF_00041161; iTF_00042036; iTF_00040151; iTF_01085703; iTF_01064961; iTF_01064076; iTF_01533360; iTF_01535312; iTF_01532466; iTF_00712275; iTF_01063156; iTF_00929013; iTF_01534262; iTF_00445530; iTF_00302459; iTF_01084541; iTF_01062206; iTF_00301536; iTF_00685775; iTF_01031398; iTF_00111937; iTF_00925154; iTF_00831524; iTF_00374824; iTF_00831786; iTF_00238128; iTF_00374577; iTF_00375678; iTF_01095268; iTF_01094565; iTF_01094358; iTF_01095519; iTF_01340516; iTF_01339303; iTF_01340814; iTF_00071751; iTF_00071970; iTF_00274664; iTF_00888584; iTF_00425737; iTF_01441354; iTF_01030540; iTF_01030539; iTF_00809455; iTF_01029551; iTF_01026668; iTF_01027632; iTF_00120849; iTF_01117649; iTF_01118642; iTF_01119674; iTF_00449586; iTF_01093458; iTF_00758579; iTF_00758818; iTF_00852339; iTF_00300515; iTF_00952946; iTF_00952116; iTF_00851063; iTF_00852089; iTF_00974042; iTF_00810359; iTF_00772280; iTF_01247448; iTF_01193050; iTF_00043835; iTF_01230971; iTF_01028604; iTF_00447626; iTF_00446553; iTF_00177453; iTF_00273864; iTF_00147856;
90% Identity
iTF_00121735;
80% Identity
-