Acen053596.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- Znf711
- Assembly
- GCA_905333075.2
- Location
- HG995392.1:19126902-19129700[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.16 1.1e+04 -1.5 0.0 26 43 462 479 456 485 0.86 2 6 0.39 2.5e+04 -2.7 0.0 24 48 489 513 487 514 0.88 3 6 7.2e-06 0.47 12.4 0.0 24 50 664 689 660 691 0.90 4 6 0.00026 17 7.4 0.1 12 49 700 738 696 744 0.79 5 6 0.08 5.2e+03 -0.5 0.0 22 51 796 825 793 826 0.83 6 6 0.00015 10 8.1 0.0 18 49 820 851 813 856 0.86
Sequence Information
- Coding Sequence
- ATGGAGGAAGTGGAGGGAAATCACATCGCTCCAGAGCACTTAGAATGGATAAAACAGAAACTCAAGACAGTGTGGACATCTCCCACGTTCTGTGGACTATGTCTGGAGAGCCGTGGCAACTTCTGTTCCATTGACATGGAATTCGTTATCAGCCATCAGACATTCTCTAAATGTCTACAAGATATACTGAACTATGTATTTAATGAAGATATTGAACACTTCATGTCAAGTCCGCACTTATGCGACAGTTGTACAGAGAAAACAATCCAATCTTACCTTTTCATACACAACACAAAGCAATTGAACAAAATCCTTAACAACTGCATCGCAGACCTTGACTCTAAAGTAATTGACATCAACACACAACTTGATGAATCCGTGACATATGATACTGCCAACGTAATGATTGTCCTGGATAATGACACAGAACTTTATAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCTACTGCTACACCCATTGCAATGAAAGAACCAATTAATCCAAAGCCACCACAGCCAAAAATAATTGAAGTTGCAAAACTTCATATGCCCAtagtaattaaaaaagaaatagaGAAACCGAAGGAAGTGAGGCAAAACAAAGTAAGGAAAGTTATTAAAGCTGATGGAACCCCAAACATAAGCTTAAAAGAAGGTCACATTGTGATAAAGCCTTTAAACTCTGTACGAACATCAGCTCCACGGTACAACACTTATGAATGCACTGATTGTCCAGATATTTTCACCACTTACAGATCCTTAAAGGAACATGAAAAAGCCAAGCATAAAAAGTCTGTTTACAGCTGCAAGTTATGCGACAAGACTTATAACACTCAGCAGTATTTGAACATACATTACAAGACACATTCTAGAGCTAGATGTAAGTTGTGTCAAGTTATACTCCCAGAAGGGGATTTAATGGAACATTTGAGGACATTTCATCCTAATTTAGTGTACCCTTGCAAGTTTTGCGACCTAGTCTACTACACCCAAGAGTCTTTGGATACACATTTCAAAATAAGCCATTTAGTCAATGACACAAGAGCTAAATCTCAATGCGTAATGTGTCTAAAGAACTTTATGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCATGCTCAGAATGTTTTGTAATGCCATGCATTCACtataagtatttaaattctTATAGAGAGCAAGTTTTGAACCAtgtgaacaaaataaaatgcTTAGATTGTGACTATGTTACTCGGCGCAAAGAACATCTAATAGGTCACACGAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAGTCAACAGTTTTACACTAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATCTATTTTGTCCTTACTGTGACTTTGAATTCAAAGACAGCAGAACTTTGATAACACATAGGAAAGCCTGCAAACTCGTTATACGGCCATTCCAATGTACCCACTGTGTTGCCTCATTCGACATTGGGGAAGAGTTGACCAATCATGAGAACTTAAAACATAATGAAGGAGTTTACGCTTGCAACCTTTGTAAAAGCAAATTCCTTATTGAAATAGAACTGGAAGAACATCATGCGAGGGTTCATGGCGGAATACAATGCAAGAAAAGGAGAAAACACATTGAATGCTCTTTATGTGacattatgtttaaaaatataaaagaaatgcTTCAACATGAGAAGTTCCATACAGAAGATGAAGTTTACCCATGCAAAGTGTGCTCGAAAAAATTCAaatcattaactaaattatacaTTCACAATCAAAGGCACTATACCAACAGAATAAAATGTTCTGGATGTAACAAAAGGGTAGCTGCATCATTTTACCCCCAGCATGCGGTGAGGTGTCCGTACAAAAGAGATTCAACTTTGAGCCACATCTGTGAAGTATGTGGCAAGTCCTACCACCTGGAATCATTGCTACGCTTCCATCAAAAAATCCACTTGGATCCAAAGCCATGCCCTCAATGCAACAAGGTTATCAAACCTTCAAGTTTAAAAAGGCATATGGAGCTAGTCCATGGAGCTGGCACGGAACAAGAGGATGAAGACACTGCTACGGAACCAAGGAAACAAAAAGTTGGGTCAAACAAGCCTTCAATTAAATGTAACTTATGTGGACATGTAGTGAGAAAGAAATGTGACTTAGACGCTCATTTGAACCGATATCATCTGAAAATCAAGCCGTATGTCTGTCATATATGTAGTAAAGACTTCTGTGGTAAAGTTCGACTGAAAGAACATATTTCAACACACACGAATGACAACAGTTGCTTTTGTTCTGTTTGTGGCGGAAAATTTGCGAACCGAGTGTGTCTTAAAATGCACATGAGAATGCATACTGGAGAAGCACCTTACCCCTGTGATCTTTGCGGACAACGATTCAGGTCTTCTAGTATGATGAAGAGTCatagaataaaaaaacatatgGAAAAAACAATTAGTTGCCCATTGTGTGATAGTATGTTCTTCATGGCCAGAGATATGAGACATCACTTCAAGAAAGCTCATTGGAAGTTCAAGGATGGAAGGCCATTTGATCCAAAGGATGTTGAAGAGTTACCCGAGGAGTCTTATTATCTTTTTGAAGACGGTAGACTGCCGAAACTTAATCAAGATTAG
- Protein Sequence
- MEEVEGNHIAPEHLEWIKQKLKTVWTSPTFCGLCLESRGNFCSIDMEFVISHQTFSKCLQDILNYVFNEDIEHFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCIADLDSKVIDINTQLDESVTYDTANVMIVLDNDTELYKTIIDVKSMTEIVPTATPIAMKEPINPKPPQPKIIEVAKLHMPIVIKKEIEKPKEVRQNKVRKVIKADGTPNISLKEGHIVIKPLNSVRTSAPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYSCKLCDKTYNTQQYLNIHYKTHSRARCKLCQVILPEGDLMEHLRTFHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCIHYKYLNSYREQVLNHVNKIKCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRPFQCTHCVASFDIGEELTNHENLKHNEGVYACNLCKSKFLIEIELEEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHTEDEVYPCKVCSKKFKSLTKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDSTLSHICEVCGKSYHLESLLRFHQKIHLDPKPCPQCNKVIKPSSLKRHMELVHGAGTEQEDEDTATEPRKQKVGSNKPSIKCNLCGHVVRKKCDLDAHLNRYHLKIKPYVCHICSKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTISCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFDPKDVEELPEESYYLFEDGRLPKLNQD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00121735;
- 80% Identity
- iTF_00173553;