Mpal027968.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540849.1:1638879-1642441[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.007 0.71 11.4 0.5 1 23 243 266 243 266 0.94 2 17 7.6e-05 0.0078 17.6 5.9 1 23 271 293 271 293 0.99 3 17 5.7 5.8e+02 2.2 0.1 3 23 298 318 297 318 0.84 4 17 0.022 2.2 9.8 0.8 1 23 323 346 323 346 0.96 5 17 0.00096 0.098 14.1 0.8 2 23 407 429 406 429 0.96 6 17 0.00057 0.058 14.8 1.8 1 23 435 458 435 458 0.96 7 17 0.0018 0.19 13.2 0.8 3 21 463 481 461 482 0.93 8 17 0.00085 0.087 14.3 1.0 1 23 490 513 490 513 0.92 9 17 0.04 4.1 9.0 0.3 2 23 554 575 553 575 0.94 10 17 0.00039 0.04 15.3 2.3 1 23 581 603 581 603 0.97 11 17 0.005 0.51 11.8 2.7 1 23 639 661 639 661 0.96 12 17 0.0066 0.68 11.5 0.1 3 23 667 687 666 687 0.93 13 17 0.0015 0.16 13.5 1.4 2 23 712 734 711 734 0.96 14 17 0.0015 0.16 13.5 3.8 1 23 740 762 740 762 0.98 15 17 0.00077 0.078 14.4 3.9 2 23 769 790 768 790 0.96 16 17 5.9e-05 0.006 17.9 1.6 1 23 796 819 796 819 0.97 17 17 1.2 1.2e+02 4.3 4.0 3 23 826 847 824 847 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAGCAGTGCTTAATGTCAAAACAGATCCAAAGCATTTGGAATGgataaaacaaaaactcaaGACCGTATGGACGTGTCCAACATTCTGCGGACTATGTCTCGATGGGTCCAGCAATTTCTGTTCTGTTGACGTGGAGTTTGTTATCAGTCATCAGACTTTCTCCAAATGTCTGCGGGATATATTAAACTATGTGTTTAATGATGATATTGAAAATTTTATGTCAAGTCCAAACTTATGCGACAGTTGTGCAGAGAAAACAATACAGGCTTATCTCTTCATACACAACACAAAACAGCTGAACAAAATCATAACCAACTGCATCTCAGATCTCGACTCCAAAGTGATTGACATCAACACTCAACTCGATGATACCATGACATACGATACAGCCAACGTAATGATTGTTTTAGAAAATGATACGGATTTATACAAGACAATCATCGATGTCAAGTCCATGACTGAAGTTGTGCCTACCACTCAACATATTGCAATGAAAGATCCAGTAATTCCTAAGGTGGAGCCAAAAGTTGTTCAGATTGCCAAACCTGTTAAACCAATAGTAATAAAAAGGGAAGTAGAAAAACCAAAGGAAGTGAAACAagtcaaagtaagaaaaattGCAAAAGCTGATGGAACTCCGAACATTAGTTTGAAAGAAGGTCATATTGTCATAAAGCCATTGAGTTCGGTAAGAACATCAGCCCCTCGCTACAACACATATGAATGCACCGAATGTCCAGATATATTCACTACTTACAGATCATTGAAAGAACATGAAAAGGCCAAGCATAAAAAGTCTGTTTACCGATGCAAGCTGTGTGATAAAACTTATAACACTCAGCAATATTTGTGCATACATTATAAGACACATTCACGGGCTAGATGTAAGTTGTGCCAAGTTATACTACCAGAGGAGGAGTTAATGGAACATTTAAGGACAATTCACCCTAACTTAGTGTACCCATGCAAATTTTGTGATCTAGTCTACTACACTCAAGAGTCTATGGATACACATTTCAAAATAAGTCACTTGATTAATGACACTAAAACGAAATCTCAATGTGTAATGTGTCTTAAGAACTTTGTGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCATGCTCTGAATGTTTTGTTATGCCATGCATTCACTTTAGATATCTTAATTCTTATAGAGAGCAGGTCTTGGGCcatgcaaataaaatacaatgctTGGATTGTGATTATGTTACTAGGCGCAAAGAACATCTCATTGGTCACACTAACAGAGAGCATTTAGACCATCATCCATTCACTTGTGCAGATTGTAACCAGCAGTTTTATACAAAGTTGAGTTTAAAAACTCACATCATGCAATTCCACGAGGATCTATTCTGTCCACACTGTGATTTTGAGTTTAAGGATAGCAGGACTTTGATAACTCATAAGAAAGCCTGTAAGCTTGTGATACGGCCGTTCCAGTGTACCCACTGTGTGGCCTCATTCGACACTGCTGAAGAATTGACCAAACATGAATCCTTGAAGCATAGTGAAGGTGTTCAGTCTTGCTCTCTTTGTAAAAGCAAATTCCTTACTGATATAGAATTGCAAGAACACCACGCTAGGGTTCACGGGGGTATACAATGCAAGAAAAGGAGAAAACATATTGAATGCTCCTTATGTGACATTatgtttaaaaacataaaagaaatGCTTCAACATGAAAAATTCCACAATGCTGATGACGTTTACCCTTGTAAAGTGTGCTCGAAGAGCTTTAAAACGTTAAGGAAACTATACATCCACAATCAAAGGCATTATACTAACAGAATAAAATGTTCTGGTTGTAATAAACGAGTGGCAGCTTCATTCTACCCGCAGCATGCAGTGAGGTGTCCTTACAAAAGAGATACTATTTTGACCCACATCTGTGAAGTATGCGGCAAGTCTTTCCACCTAGAATCATTGCTACGTTTCCATCAGAGAATTCACATGGAGCCCGAACCATGTCCTCGATGCAACAAGGTTATCAAACCTTCAAGTTTGAAAAGGCATATGGAGCTAGTCCATGCAGAAGAAGAGGACAATTCAGATAACAAACCTAGGAAAACGAAAGGTATATCAAGCAAACCGCCGTCAATTGAGTGTGACTTATGTGGACATGCAGTCAGAAAGAAATGTGATTTAGAAGCACATATGAACAGGTATCATCTGAAAATCAAACCATATGTCTGCCATATATGCAATAAAGACTTTTGTGGTAAAGTCCGATTGAAAGAACATGTGACAACGCACACAAGTGACAACAGTTGTTACTGTCCTTTTTGTGGAGGTAAATTTGCCAACCGTGTATGCCTTAAAATGCACATGAGAATGCATACGGGAGAAGCACCTTATCCCTGTGATCTATGCGGTCAGAGATTTAGGTCTTCTAGCATGATGAAGACACATAGACTAAAGAAACATTTAGAGAAAACTGTTTGTTGTCCACTTTGCGATAGTATGTTTTACATGGCTAGAGATATGAGGCATCATTTCAAGAAAACCCATTGGAAATTCAAGGATGGGAGGCCCTTCAATCCTAAAGATGTTGAAGAGTTACCAAAGGAGTGTTATTATCTTTTTGAAGATGGTCGACTGCCGAAAATCAATCGAGACTAG
- Protein Sequence
- MEEAVLNVKTDPKHLEWIKQKLKTVWTCPTFCGLCLDGSSNFCSVDVEFVISHQTFSKCLRDILNYVFNDDIENFMSSPNLCDSCAEKTIQAYLFIHNTKQLNKIITNCISDLDSKVIDINTQLDDTMTYDTANVMIVLENDTDLYKTIIDVKSMTEVVPTTQHIAMKDPVIPKVEPKVVQIAKPVKPIVIKREVEKPKEVKQVKVRKIAKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTECPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLCIHYKTHSRARCKLCQVILPEEELMEHLRTIHPNLVYPCKFCDLVYYTQESMDTHFKISHLINDTKTKSQCVMCLKNFVDAEMKKHKCKFSCSECFVMPCIHFRYLNSYREQVLGHANKIQCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPHCDFEFKDSRTLITHKKACKLVIRPFQCTHCVASFDTAEELTKHESLKHSEGVQSCSLCKSKFLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADDVYPCKVCSKSFKTLRKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTILTHICEVCGKSFHLESLLRFHQRIHMEPEPCPRCNKVIKPSSLKRHMELVHAEEEDNSDNKPRKTKGISSKPPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKVRLKEHVTTHTSDNSCYCPFCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKTHRLKKHLEKTVCCPLCDSMFYMARDMRHHFKKTHWKFKDGRPFNPKDVEELPKECYYLFEDGRLPKINRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_01031398;
- 80% Identity
- -