Ccla017608.1
Basic Information
- Insect
- Caradrina clavipalpis
- Gene Symbol
- -
- Assembly
- GCA_932526535.1
- Location
- OW052113.1:987102-992372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0011 0.069 13.9 0.4 1 23 251 274 251 274 0.94 2 18 7.4e-05 0.0047 17.5 5.1 1 23 279 301 279 301 0.98 3 18 4.7 3e+02 2.4 0.2 2 23 305 326 305 326 0.86 4 18 0.021 1.3 9.8 0.8 1 23 331 354 331 354 0.96 5 18 0.0016 0.099 13.4 0.6 2 23 415 437 414 437 0.95 6 18 0.00013 0.0081 16.8 1.2 1 23 443 466 443 466 0.96 7 18 0.0013 0.086 13.6 0.2 3 21 471 489 469 490 0.93 8 18 0.0045 0.28 11.9 0.5 1 23 498 521 498 521 0.95 9 18 2 1.2e+02 3.6 0.7 1 23 526 549 526 549 0.93 10 18 0.013 0.82 10.5 0.3 2 23 562 583 561 583 0.94 11 18 0.0037 0.24 12.2 1.4 1 23 589 611 589 611 0.97 12 18 0.0048 0.31 11.8 2.7 1 23 647 669 647 669 0.96 13 18 0.018 1.1 10.0 0.3 2 23 674 694 673 694 0.95 14 18 0.0015 0.093 13.5 1.4 2 23 723 745 722 745 0.96 15 18 0.00013 0.0086 16.7 2.2 1 23 751 773 751 773 0.98 16 18 3.9e-05 0.0025 18.4 5.5 2 23 780 801 779 801 0.96 17 18 2.8e-05 0.0018 18.8 2.1 1 23 807 830 807 830 0.97 18 18 0.75 48 4.9 3.6 3 23 837 858 835 858 0.95
Sequence Information
- Coding Sequence
- ATGATGGAAGGTGGAAGTGAACACAAGATGGATGAAGAGGATGAGTTAAATCAATCCAATCCAAAACGTCTAGAATGGATAAAAGAGAAACTGAAGACGGTGTGGACTTCTGCCAAGTACTGCGGACTGTGTTTGGAGAACCAGGGCAACTTTTGTTCCGTTGACATGGAGCTTGTTATCAGCCATCAGAAATTCTCCAAATGTTTGCAGGATATACTGAACTATGTGTTTGGTGAAGATATTGAAAACTCCATGTCAAGTCCGCACTTGTGTGACAGTTGTACGGAGAAGACAATTCAATCGTACCTCTTCATACACAACACAAAACAACTAAACAAAATCCTGAAAAACTGCATCTCTGACCTGGATTCCAAAGTAATTGACATCAGTGCACAACTTGATGAATCTATAACCTTTGACACTGCCAATGTAATTATTGTCCTAGAGAACGATACAGAGTTTTACAAGACAATAATTGATGTCAAGACTGTCACCGAAATAGTGCCAACTGCCAAACCCATAGCAATGAAAGAACCCTCAAATGCTGCACCGCCACAGCCAAAAGTAATTGAAGTGGAGAAGCCTGTAAACCCTGTAGTAATTCAAAGGGAAACGCCGAAAGAAGTGCGACAAAATAAACCAAGGAAAGTTATAAAAGCTGACGGAACTCCGAACATTAGTTTGAAAGAAGGACACATTGTTATAAAACCATTGAGCTCTGTAAGAACTTCAGCCCCACGGTACAACACATATCAATGTCCTGATTGTCCCGATATATTCACCACTTACAGATCATTGAAGGAACATGAAAAAGCTAAACATAAAAAGTCCGTTTACCACTGCAAGTTGTGCGACAAGACTTATAACACTCAGCAGTATTTGAACATACATTACAAGACACATTGCAGAGCTAGATGCAAGTTGTGTCAACTTATTCTGCCAGAAGGGGAGTTAATGGACCATTTGCGGACTCTTCATCCCAATTTAGTGTACCCTTGCAAGTTCTGTGATCTAGTGTACTACACCCAAGAGTCTATGGACACACATTTCAAAATAAGCCATTTAGTGAATGATACAAGAGCTAAATCTCAATGTGTAATGTGTCTGCGGAACTTTATGGAAGCTGAGATGAAGAAGCATAAGTGTAAGTTCTGCTGCTCTGAATGCTTTGTCATGCCATGCATTCACTATAAGTATTTAAATTCCTACAGGGAGCAAGTGTTAAGCCATGTAAATAAAATTAAATGCTTAGATTGTGATTATGTGACTCGGCGTAAAGAACATCTAATTGGACATGCTAATAGGGAGCATTTAGACCATCATCCGTTCACTTGTGCCGATTGTGGCCAGCAGTTTTATACCAAGTTGAGCTTAAAAACACACATCATGCAATTCCATGAAGATCTCTTCTGTCCGTACTGTGACTTTGAATTCAAGGATAGCAGAACTTTGGCAACACATAGGAATGCCTGTAAACTTGTCATACGGTCATTCCAATGTTCCCACTGTGTCGCATCATTTGATGTCGCTGAAGAGTTGAGCCGACATGAGAAGTTGCAACATAGTGCAGGAGTTTACGCTTGCACCCTTTGCAAAAGCAGATTCCTTACTGAAATAGAACTGCAAGAGCATCACGCCAGGGTACATGGTGGCATACAGTGCAAGAAAAGGAGGAAACATATTGAATGTTCTATATGTGATATAATGTTTAAAAATATAAAAGAAATGCTTCAACATGAAAAATTTCACACTGCAGATGAGGTTTACCCGTGCAAAGTCTGCTCCAAACAATTCAAATCGTTGATTAAATTGTACATTCACAATCAGAGACACTATACAACAAGAATAAAATGTTCTGGTTGTAACAAAAGGGTAGCTGCATCATTCTACCCCCAGCATGCAGTGAGGTGTCCGTACAAAAAAGATACAACGTTGAGCCATATCTGTGAAGTATGCGGCAAGTCTTTCCATCTAGAATCCTTGTTGCGTTTCCATCAAAGAATACACTTAGAGCCTCAGCCGTGCCCTCGATGCAACAAAGTAATCAAGCCTACAAGTCTAAAAAAGCATATGGAGCTCCATGGTGGCGAACAAGATTGGAGCATTGTGGACCCGAAACCAAAGAAAAGAGGTGCTGGTGGTGGTGGAACAAACAAGCCTTCTATTGAATGTGATTTATGTGGACATGCAGTGAGAAAAAAATGCGACTTAGAAGCTCATATGAATCGATATCATCTGAAAATTAAGCCTTACATCTGTAATATATGTAATAAGGACTTCTGCGGTAAAGTTCGGTTGAAAGAACACATGTCTACGCACACAACTGAAAACAGTTGTTTCTGTTCCATTTGCGGAAAGAAATTTGCTAACCGTGTGTGTCTAAAAATGCACATGAGAATGCATACAGGAGAAGCGCCTTATTCCTGTGATATTTGTGGACAAAAATTCAGATCTTCAAGCATGATGAAGACCCATAGATTAAAGAAACATTTAGAGAAAACAGTCTGTTGTCCTATGTGTGATAATATGTTCTTTATGGCTCGAGACATGAGGCATCACTTCAAGAAAGCTCATTGGAAGTTCAAGGATGGAAGACCGTTCAATCCTAGAGATATTAAAGAGTTACCGGAGGAGTTGTATTATCTTTTTGAAGATGGTAGATTGCCAAAATTAACACAAGACTAA
- Protein Sequence
- MMEGGSEHKMDEEDELNQSNPKRLEWIKEKLKTVWTSAKYCGLCLENQGNFCSVDMELVISHQKFSKCLQDILNYVFGEDIENSMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILKNCISDLDSKVIDISAQLDESITFDTANVIIVLENDTEFYKTIIDVKTVTEIVPTAKPIAMKEPSNAAPPQPKVIEVEKPVNPVVIQRETPKEVRQNKPRKVIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYQCPDCPDIFTTYRSLKEHEKAKHKKSVYHCKLCDKTYNTQQYLNIHYKTHCRARCKLCQLILPEGELMDHLRTLHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTRAKSQCVMCLRNFMEAEMKKHKCKFCCSECFVMPCIHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLATHRNACKLVIRSFQCSHCVASFDVAEELSRHEKLQHSAGVYACTLCKSRFLTEIELQEHHARVHGGIQCKKRRKHIECSICDIMFKNIKEMLQHEKFHTADEVYPCKVCSKQFKSLIKLYIHNQRHYTTRIKCSGCNKRVAASFYPQHAVRCPYKKDTTLSHICEVCGKSFHLESLLRFHQRIHLEPQPCPRCNKVIKPTSLKKHMELHGGEQDWSIVDPKPKKRGAGGGGTNKPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYICNICNKDFCGKVRLKEHMSTHTTENSCFCSICGKKFANRVCLKMHMRMHTGEAPYSCDICGQKFRSSSMMKTHRLKKHLEKTVCCPMCDNMFFMARDMRHHFKKAHWKFKDGRPFNPRDIKELPEELYYLFEDGRLPKLTQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00274664;
- 80% Identity
- -