Asor003308.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000009.1:11381897-11385102[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.16 5.2e+03 -1.5 0.0 26 43 462 479 456 485 0.86 2 5 1.8e-05 0.58 11.1 0.1 24 48 664 687 660 690 0.91 3 5 0.00034 11 7.1 0.1 13 49 700 738 695 744 0.76 4 5 0.08 2.6e+03 -0.5 0.0 22 51 796 825 793 826 0.83 5 5 0.00021 6.6 7.8 0.0 18 49 820 851 814 856 0.86
Sequence Information
- Coding Sequence
- ATGGAGGAAGGAGAGTCAACTCAAACAGCTCCAGAGCACTTAGAATGGATAAAACAGAAGCTCAAGACAGTTTGGACATCTCCCACGTTCTGCGGACTATGTCTGGAGAGCCGCGGCAACTTCTGTTCCGTTGACATGGAACTCATTATCAGCCATCAGACGTTCTCTAAATGTCTGCAGGACATACTGAACTATGTATTTAATGAAGACATTGAAAACTTCATGTCAAGTCCGCACTTATGCGATAGTTGTACAGAGAAGACAATACAGTCTTACCTCTTTATACACAACACAAAACAACTGAacaaaatccttcaaaactgCATCTCAGACCTCGACTCCAAAGTAATTGACATCAACGCACAACTTGATGAATCCATGACATATGATACTGCCAACGTAATGATTGTCCTGGAAAATGACACTGAACTTTACAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCAACTGCTAAACCCATTGCAATGAAAGAACCAGTTAATCCAAAGCCACCGCAGCCAAAAGTAATTCAAGTAGCCAAACTTCATAAACccatagtaataaaaaaagaaacagaaataCCTAAAGATGTGAGGCCAGTCAAAGTAAGGAAAATTATAAAAGCTGATGGAACTCCAAATATAAGCCTGAAAGAAGGTCACATTGTGATAAAGCCTTTAAGCTCTGTACGGACCTCAGCTCCACGGTACAACACTTATGAATGCACTGATTGTCCAGACATTTTCACCACTTACAGATCCTTGAAGGAACATGAAAAGGCCAAGCACAAAAAGTCTGTCTACCGCTGCAAGTTATGCGACAAGACTTATAACACTCAGCAATATTTGAACATACATTACAAGACACATTACAGGGCTAGGTGCAAGTTATGTCAACTTATACTCCCAGAAGGGGATTTAATGGAACATTTGAGGACACTTCATCCTAACTTAGTATACCCGTGTAAGTTTTGTGACCTAGTCTACTACACCCAAGACTCTTTGGACACACATTTCAAAATAAGCCATTTGGTCAATGACACAAAAGCTAAATCTCAATGCGTTATGTGTCTAAGGAACTTTATGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCATGCTCAGAATGTTTTGTCATGCCATGCGTTcactataagtatttaaattctTATAGAGAGCAGGTTTTGAGCCAtgtgaacaaaataaaatgcttgGATTGCGACTATGTGACTCGGCGCAAAGAACATCTAATAGGTCACGCCAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAGTCAACAGTTCTACACGAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATCTATTTTGTCCGTACTGCGACTTTGAATTTAAAGACAGCAGAACTTTGATAACACATAGAAAAGCCTGCAAACTTGTTATACGGTCATTCCAGTGTACCCACTGTGTTGCCTCTTTCGACGTTCTAGACGAGTTGACCAATCATGAGAACTTGAAACATAATGATGGAGTGTACGCTTGCAGTCTTTGTAAAAGCAAATTCCTTATGGAAATTGAACTGGAAGAGCACCATGCGAGGATTCATGGGGGAATACAGTGCAAAAAAAGGAGAAAACACATTGAATGCTCTTTATGTAacataatgtttaaaaatataaaagaaatgcTTCAACATGAAAAGTTTCACGGAGATGATGAAATTTATCCGTGCAAAGAGTGCCCAAAGAAATTTAAATCATTAAGTAAATTATACATTCATAATCAAAGGCATTATACCAACAGAATAAAATGTTCTGGATGTAACAAAAGGGTAGCTGCATCATTCTACCCCCAGCATGCGGTGAGGTGTCCGTATAAAAGAGATACAACTTTGAGCCATATCTGTGAAGTATGCGGCAAGTCCTTCCACCTGGAATCATTGCTACGCTTCCATCAAAGAATCCACTTGGACCCAAAACCATGTCCTCGTTGCAACAAGGTTATCAAACCTTCAAGTCTAAAAAGGCACATGGAGCTAGTCCATGGAGTTGGTACGGAACAAGAGAACGAAGAGACTACTACGGAACCGAGGAAACAAAAAGTTGGATCAAGCAAGCCATCGATAAAATGTGACTTATGTGGACATGTAGTGAGAAAGAAATGTGACTTAGACGCACATTTGAACCGATATCATCTGAAAATCAAGCCGTACATCTGTCATATATGCAGTAAAGACTTCTGCGGTAAAGTTCGACTGAAAGAACATATTTCTACGCACACAAATGACAACAGTTGCTTTTGCTCTGTCTGTGGAGGGAAATTTGCGAACCGTGTGTGTCTTAAAATGCATATGCGAATGCATACTGGGGAAGCACCGTACCCCTGTGATCTATGCGGGCAACGCTTCAGGTCTTCTAGTATGATGAAGAGTCATAGGATTAAGAAACATATGGAGAAAACAATTAGTTGTCCGTTGTGTGATAGTATGTTCTTCGTGGCCAGAGATATGAGACATCACTTCAAGAAGGCTCACTGGAAATTCAAGGATGGAAGGCCGTTCGACCCTAAGGATGTTAAAGAGTTACCCGAGGAGTCGTATTATCTTTTTGAAGATGGTAGATTGCCTAAACTTCATCAAGATTAG
- Protein Sequence
- MEEGESTQTAPEHLEWIKQKLKTVWTSPTFCGLCLESRGNFCSVDMELIISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILQNCISDLDSKVIDINAQLDESMTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTAKPIAMKEPVNPKPPQPKVIQVAKLHKPIVIKKETEIPKDVRPVKVRKIIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHYRARCKLCQLILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQDSLDTHFKISHLVNDTKAKSQCVMCLRNFMDAEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRSFQCTHCVASFDVLDELTNHENLKHNDGVYACSLCKSKFLMEIELEEHHARIHGGIQCKKRRKHIECSLCNIMFKNIKEMLQHEKFHGDDEIYPCKECPKKFKSLSKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRIHLDPKPCPRCNKVIKPSSLKRHMELVHGVGTEQENEETTTEPRKQKVGSSKPSIKCDLCGHVVRKKCDLDAHLNRYHLKIKPYICHICSKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTISCPLCDSMFFVARDMRHHFKKAHWKFKDGRPFDPKDVKELPEESYYLFEDGRLPKLHQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00121735;
- 80% Identity
- iTF_00124571;