Basic Information

Insect: Mythimna vitellina
Gene Symbol: -
Assembly: GCA_949316375.1
Location: OX438710.1:1708961-1713910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.007 0.63 11.3 0.5 1 23 267 290 267 290 0.94

2 17 7.6e-05 0.0069 17.5 5.9 1 23 295 317 295 317 0.99

3 17 5.7 5.2e+02 2.2 0.1 3 23 322 342 321 342 0.84

4 17 0.022 2 9.8 0.8 1 23 347 370 347 370 0.96

5 17 0.00096 0.087 14.0 0.8 2 23 431 453 430 453 0.96

6 17 0.00057 0.052 14.8 1.8 1 23 459 482 459 482 0.96

7 17 0.0018 0.17 13.2 0.8 3 21 487 505 485 506 0.93

8 17 0.00079 0.072 14.3 0.6 1 23 514 537 514 537 0.91

9 17 0.04 3.7 8.9 0.3 2 23 578 599 577 599 0.94

10 17 0.00051 0.046 14.9 2.2 1 23 605 627 605 627 0.97

11 17 0.005 0.46 11.8 2.7 1 23 663 685 663 685 0.96

12 17 0.021 1.9 9.8 0.2 3 23 691 711 690 711 0.93

13 17 0.0015 0.14 13.4 1.4 2 23 744 766 743 766 0.96

14 17 0.001 0.095 13.9 3.6 1 23 772 794 772 794 0.98

15 17 0.002 0.18 13.1 4.1 2 23 801 822 800 822 0.96

16 17 5.9e-05 0.0054 17.9 1.6 1 23 828 851 828 851 0.97

17 17 1.2 1.1e+02 4.3 4.0 3 23 858 879 856 879 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.007	0.63	11.3	0.5	1	23	267	290	267	290	0.94
2	17	7.6e-05	0.0069	17.5	5.9	1	23	295	317	295	317	0.99
3	17	5.7	5.2e+02	2.2	0.1	3	23	322	342	321	342	0.84
4	17	0.022	2	9.8	0.8	1	23	347	370	347	370	0.96
5	17	0.00096	0.087	14.0	0.8	2	23	431	453	430	453	0.96
6	17	0.00057	0.052	14.8	1.8	1	23	459	482	459	482	0.96
7	17	0.0018	0.17	13.2	0.8	3	21	487	505	485	506	0.93
8	17	0.00079	0.072	14.3	0.6	1	23	514	537	514	537	0.91
9	17	0.04	3.7	8.9	0.3	2	23	578	599	577	599	0.94
10	17	0.00051	0.046	14.9	2.2	1	23	605	627	605	627	0.97
11	17	0.005	0.46	11.8	2.7	1	23	663	685	663	685	0.96
12	17	0.021	1.9	9.8	0.2	3	23	691	711	690	711	0.93
13	17	0.0015	0.14	13.4	1.4	2	23	744	766	743	766	0.96
14	17	0.001	0.095	13.9	3.6	1	23	772	794	772	794	0.98
15	17	0.002	0.18	13.1	4.1	2	23	801	822	800	822	0.96
16	17	5.9e-05	0.0054	17.9	1.6	1	23	828	851	828	851	0.97
17	17	1.2	1.1e+02	4.3	4.0	3	23	858	879	856	879	0.95

Sequence Information

Coding Sequence: ATGGAACAAGCTAATTTTATCGACTGGACGAAATTGAAACTGGAACGTGAAGGTGCAAGcCAATGCAAAATGGAGGAAACAGTGCCTAATGCCAGTCAAACAGATCCAAAGCATTTGGAAtggataaaacaaaaactcaagACCGTATGGACATGTCCCACATTCTGCGGACTATGTCTTGATGGCTTCAGCAATTTCTGTTCTGTTGACGTGGAGTTTGTTATCAGCCATCAGCCATTCTCTAAATGTTTGCGGGACATATTAAACTATGTGTTTAATGATGATATTGAAAATTTCATGTCAAGCCCAAACTTATGCGACAGTTGTGCAGAGAAAACAATACAGGCTTATCTCTTCATACACAACACAAAACAGCTGAACAAAATCATAACCAACTGCATCTCAGATCTAGACTCCAAAGTGATTGATGTCAACACTCAACTCGATGATTCCATGACATATGATACAGCCAATGTAATGATTGTCTTAGAAAATGATACGGAACTATACAAGACAATCATCGATGTCAAGTCTATGACTGAAGTTGTGCCTACCACTAAACATATTGCAATGAAAGATCCAGTAATTCCTAAAGCAGAACCAAAAGTTGTTCAGATTGCCAAACCTGCTAAACCAATAGTAATAAAAAGGGAAGTAGAAAAACCAAAGGAAGTGAAACAagtcaaagaaagaaaaattgtaaAAGCTGATGGAACTCCAAACATAAGTTTGAAAGAAGGTCATATTGTCATAAAGCCATTGAGTTCCGTAAGAACATCAGCCCCTCGATACAACACATATGAATGCACTGAATGTCCAGATATATTCACTACTTACAGATCATTGAAAGAACATGAAAAAGCCAAGCATAAAAAGTCTGTTTACCGATGCAAGCTGTGTGACAAAACATATAACACTCAGCAATATTTGTGCATACATTACAAGACACATTCCCGGGCTAGATGTAAGTTGTGCCAAGTAATACTACCAGAAGAGGAGTTAATGGAACATTTGAGGACAGTTCACCCTAATTTAGTGTACCCATGCAAATTTTGCGATCTAGTCTACTACACCCAAGAGTCTATGGATACACATTTCAAAATAAGTCACTTGGTTAATGACACTAAAACAAAATCTCAATGTGTAATGTGTCTTAAGAACTTTGTGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCATGCTCTGAATGTTTTGTTATGCCATGCATTCACTTCAGGTACCTGAATTCTTATAGAGAGCAGGTCTTAGGCcatgcaaataaaatacaatgctTGGATTGCGATTATGTTACTAGGCGCAAAGAACATCTCATTGGTCACACTAACAGAGAGCATTTAGACCATCATCCATTCACTTGTGCAGATTGTAACCAGCAGTTTTATACAAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAGGATCTATTCTGTCCACACTGTGACTTTGAGTTCAAGGATAGCAGGACTTTGATAACTCATAAGAAAGCCTGTAAGCTTGTGATACGGCCGTTCCAATGTACCCACTGTGTGGCCTCATTCGACACTGCTGAAGAATTGACCAAACATGAAGCCTTGAAGCATAGTGAAGGTGTTCAGTCTTGCTCTCTTTGTAAAAGCAAATTCCTTACTGATATAGAATTGCAAGAACACCACGCGAGGGTTCACGGGGGTATACAATGCAAGAAAAGGAGAAAGCATATTGAATGCTCCTTATGTGACATaatgtttaaaaacataaaagaaatgCTTCAACATGAAAAATTCCACAATGCTGATGACATTTACCCTTGTAAAGTGTGTTCAAAGAGCTTTAAATCGTTAAGGAAACTATACATCCACAATCAAAGGCATTATACTAACAGAATAAAATGTTCTGGTTGTAATAAACGAGTAGCTGCTTCATTCTACCCGCAGCATGCAGTGAGGTGTCCTTACAAAAGAGATACTATTTTAACCCATATCTGTGAAGTATGTGGCAAGTCTTTCCACCTGGAATCATTGCTACGTTTCCATCAGAGAATCCACATGGAGCCTGAACCATGTCCTAAATGCAGCAAGGTTATCAAACCTACAAGTCTGAAAAGACATATGGAGCTAGTCCATGCAGAAGAAGAGGACAATGATTGGGTTGTCCAAACCACTTCAGATACCACGAAACCTAGGAAAATGAAAGGCATATCAAGCAAACCGCCGTCAATTGAGTGTGATTTATGTGGACATGCAGTCAGAAAGAAATGTGATTTAGAAGCACATATGAACAGGTATCATCTGAAAATCAAACCGTACGTCTGTCATATATGCAATAAAGACTTTTGTGGTAAAGTCCGATTGAAAGAACATGTATCAACACACACAAGTGACAACAGTTGTTTCTGTTCCGTTTGTGGAGGTAAATTTGCCAACCGTGTATGCCTTAAAATGCACATGAGAATGCATACGGGAGAAGCACCTTATCCCTGTGATCTATGCGGTCAGAGATTTAGGTCTTCTAGCATGATGAAGACACATAGACTAAAGAAACATTTAGAGAAAACTGTTTGTTGTCCACTTTGTGATAGTATGTTCTACATGGCTAGAGATATGAGACATCATTTCAAGAAAACCCATTGGAAATTCAAGGATGGGAGGCCCTTCAATCCTAAAGATGTTGAAGAGTTACCAAAGGAGTGTTATTATCTTTTTGAAGATGGTCGACTGCCGAAAATCAATCGAGACCAGTGA
Protein Sequence: MEQANFIDWTKLKLEREGASQCKMEETVPNASQTDPKHLEWIKQKLKTVWTCPTFCGLCLDGFSNFCSVDVEFVISHQPFSKCLRDILNYVFNDDIENFMSSPNLCDSCAEKTIQAYLFIHNTKQLNKIITNCISDLDSKVIDVNTQLDDSMTYDTANVMIVLENDTELYKTIIDVKSMTEVVPTTKHIAMKDPVIPKAEPKVVQIAKPAKPIVIKREVEKPKEVKQVKERKIVKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTECPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLCIHYKTHSRARCKLCQVILPEEELMEHLRTVHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTKTKSQCVMCLKNFVDAEMKKHKCKFSCSECFVMPCIHFRYLNSYREQVLGHANKIQCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPHCDFEFKDSRTLITHKKACKLVIRPFQCTHCVASFDTAEELTKHEALKHSEGVQSCSLCKSKFLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADDIYPCKVCSKSFKSLRKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTILTHICEVCGKSFHLESLLRFHQRIHMEPEPCPKCSKVIKPTSLKRHMELVHAEEEDNDWVVQTTSDTTKPRKMKGISSKPPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKVRLKEHVSTHTSDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKTHRLKKHLEKTVCCPLCDSMFYMARDMRHHFKKTHWKFKDGRPFNPKDVEELPKECYYLFEDGRLPKINRDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00039145;
90% Identity: iTF_00888584; iTF_01030540; iTF_01030539; iTF_01029551; iTF_01026668; iTF_01027632; iTF_00851063; iTF_00852089; iTF_00852339; iTF_00974042; iTF_01230971; iTF_01028604;
80% Identity: -