Doo016391.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411735.1:19856459-19859241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.42 51 5.7 0.3 1 23 242 265 242 265 0.92 2 18 7.6e-06 0.00093 20.6 3.4 1 23 270 292 270 292 0.99 3 18 5.2 6.3e+02 2.2 0.2 3 23 297 317 296 317 0.84 4 18 0.02 2.4 9.8 0.8 1 23 322 345 322 345 0.96 5 18 0.0015 0.18 13.4 0.6 2 23 406 428 405 428 0.95 6 18 0.0014 0.17 13.5 1.8 1 23 434 457 434 457 0.96 7 18 0.00079 0.097 14.2 0.3 3 21 462 480 460 481 0.94 8 18 0.017 2.1 10.0 0.3 1 23 489 512 489 512 0.95 9 18 0.063 7.6 8.3 0.2 2 23 553 574 552 574 0.94 10 18 0.00091 0.11 14.1 2.2 1 23 580 602 580 602 0.97 11 18 9.9 1.2e+03 1.4 0.1 2 9 608 615 607 618 0.88 12 18 0.0058 0.7 11.5 2.9 1 23 638 660 638 660 0.96 13 18 0.0056 0.68 11.6 0.2 2 23 665 686 664 686 0.93 14 18 0.016 2 10.1 2.6 2 23 715 737 714 737 0.96 15 18 0.00077 0.094 14.3 3.6 1 23 743 765 743 765 0.98 16 18 0.0018 0.22 13.1 4.1 2 23 772 793 771 793 0.96 17 18 6.2e-05 0.0076 17.7 1.2 1 23 799 822 799 822 0.96 18 18 0.24 29 6.4 1.3 2 23 828 850 827 850 0.95
Sequence Information
- Coding Sequence
- ATGGAAGCGGAGTCAAACTACACCGCTCCAGAGCACTTAGAATGGATAAAACAGAAACTTAAGACTGTATGGACGTCTCCCACATTCTGCGGACTATGTCTGGAGAGCCGTGGCAACTTCTGTTCTGTTGACATGGAACTCGTTATCAGTCATCAGACATTCTCTAAATGTCTGCAGGATATACTGAACTATGTATTTAATGAAGACATTGAAAACTTCATGTCAAGTCCTCACTTATGCGACAGTTGTACAGAGAAGACAATACAATCTTATCTTTTTATACACAACACAAAACAATTGAACAAAATCCTTAATAACTGCATCTCAGACCTTGATTCTAAAGTAATAGACATCAACACACAACTTGATGAATCTGTGACTTACGATACTGCCAACGTAATGATTGTTTTGGAAAATGACACTGAACTTTACAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCAACTGCTAAACCCATTGCTATGAAAGAACCAATTAATCCAAAGCCACCACAGCCAAAAGTAATTCAAGTTGCCAAAGTCCATAAACCCATAGTTATAAAAATGGAAACAGAAAAACCGAAGGAAGTGAGGCAAATCAAAGCAAGGAAAGTTATAAAACCTGATGGAACTCCAAACATAAGCTTGAAAGAAGGTCATATTGTGATAAAGCCTTTAAACTCTGTACGGACCTCAGCTCCACGGTACAACACTTATGAATGCATTGATTGTCCAGATATTTTCACCACTTACAGATCCTTAAAGGAACATGAAAAAGCCAAGCATAAAAAGTCTGTTTACCGCTGCAAGCTATGTGACAAAACTTATAACACTCAGCAATATTTGAACATACATTACAAGACGCATAGCAGGGCTAGATGCAAGTTATGTCAAGTTATACTTCCAGAAGGGGATTTAATGGAACATTTGAGAACACTCCATCCTAATTTGGTGTACCCTTGCAAGTTTTGTGATCTAGTCTACTACACCCAAGAGTCTATGGATACACATTTCAAAATAAGCCACTTGGTCAATGACACAAGAGCTAAATCTCAGTGTGTAATGTGTCTGAAGAACTTTATGGATGCTGAAATGAAGAAGCATAAATGCAAGTTCTCATGCTCAGAATGTTTTGTCATGCCATGCGTTCACTATAAGTATCTAAATTCTTATAGAGAGCAGGTTTTGAGCCATGTGAACAAAATAAAATGCTTGGATTGTGATTATGTTACTCGGCGAAAAGAACATCTTATAGGGCACGCTAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAGTCAACAGTTTTACACTAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATCTGTTTTGTCCTTACTGCGACTTTGAATTCAAAGACAGCAGAACTTTGATAACACATAGGAAGGCCTGCAAACTTGTTATACGGCCGTTCCAATGTGCTCACTGTGTTGCCTCATTCGACGTTGCGGAAGAACTGACCACTCATGAGAACTTGAAACACAATGAAGGAGTTTACGCATGCGCCCTTTGTAAAAGCAAATTTCTTATTGAAATAGAACTGGAAGAACATCATGCGAGGGTTCATGGCGGAATACAATGCAAGAAAAGGAGAAAACACATTGAATGCTCTTTATGTGATATAATGTTTAAAAATATAAAAGAAATGCTTGAACATGAAAAGTTCCATGGAGAAGATGAAGTTTATCCATGCAAAGTATGCTCGAAAAAATTCTATTCTTTAAGTAAATTATACATTCACAATCAAAGGCATTATACCAACCGAATAAAATGTTCTGGATGTAACAAAAGGGTTGCTGCGTCATTCTACCCCCAGCATGCGGTGAGGTGCCCGTATAAAAGAGATACAACTTTGGGCCATATCTGTGAAGTATGTGGCAAGTCGTTTCACCTGGAATCAATGCTACGCTTCCATCAAAGAATCCACTTAGATCCAAAACCATGTCCTCGGTGCAACAAGGTTATCAAACCTTCAAGTTTAAAAAGGCATATGGAGCTAGTACATGGAGTTGGCACGGAACAAGGGGAGGACGACGGCATTAGTACAGAACCAAAGAAACAAAAAGTTGTATCAAGGAAGCCTTCAATTAAATGTAATTTATGTGGACATGTAGTGAGAAAGAAATGTGACTTAGACGCTCATTTGAACCGATATCATCTAAAAATCAAGCCATACGTCTGTCATATATGCAGTAAGGACTTCTGCGGTAAAGTTCGACTGAAAGAACATATTTCAACACACACAAATGACAACAGTTGCTTTTGTTCCGTTTGTGGGGGGAAATTTGCGAACCGTGTGTGTCTTAAAATGCACATGAGAATGCATACTGGGGAAGCACCTTACCCCTGTGATCTTTGCGGACAAAGATTCAGGTCTTCTAGTATGATGAAGAGTCATAGAATAAAGAAACATATGGAGAAAACAATTAGTTGCCCATTGTGTGATAGTATGTTCTTCATGGCCAGAGATATGAGACATCACTTCAAGAAAGCTCATTGGAAGTTCAAGGATGGAAGGCCATTCGATCCTAAGGATGTTGAAGAGCTACCCGAGGAGTCGTATTATCTTTTTGAAGATGGTAGATTGCCAAAACTTAATCAAGATTAG
- Protein Sequence
- MEAESNYTAPEHLEWIKQKLKTVWTSPTFCGLCLESRGNFCSVDMELVISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDLDSKVIDINTQLDESVTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTAKPIAMKEPINPKPPQPKVIQVAKVHKPIVIKMETEKPKEVRQIKARKVIKPDGTPNISLKEGHIVIKPLNSVRTSAPRYNTYECIDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHSRARCKLCQVILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRPFQCAHCVASFDVAEELTTHENLKHNEGVYACALCKSKFLIEIELEEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLEHEKFHGEDEVYPCKVCSKKFYSLSKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLGHICEVCGKSFHLESMLRFHQRIHLDPKPCPRCNKVIKPSSLKRHMELVHGVGTEQGEDDGISTEPKKQKVVSRKPSIKCNLCGHVVRKKCDLDAHLNRYHLKIKPYVCHICSKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTISCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFDPKDVEELPEESYYLFEDGRLPKLNQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00121735;
- 80% Identity
- -