Crub037274.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424548.1:2725514-2728605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.032 4 9.4 1.2 1 23 240 263 240 263 0.94 2 18 2e-05 0.0024 19.5 2.5 1 23 268 290 268 290 0.99 3 18 4.1 5.2e+02 2.8 0.1 2 23 294 315 294 315 0.88 4 18 0.0022 0.27 13.1 0.8 1 23 320 343 320 343 0.96 5 18 0.0013 0.16 13.8 1.1 2 23 404 426 403 426 0.96 6 18 0.00062 0.078 14.8 1.8 1 23 432 455 432 455 0.96 7 18 0.00062 0.077 14.8 0.5 3 21 460 478 458 479 0.94 8 18 0.0075 0.94 11.4 0.6 1 23 487 510 487 510 0.95 9 18 6.9 8.5e+02 2.1 0.2 1 23 515 538 515 538 0.85 10 18 0.0065 0.81 11.6 0.3 2 23 551 572 550 572 0.95 11 18 0.0017 0.21 13.4 2.6 1 23 578 600 578 600 0.97 12 18 0.024 3 9.8 3.6 1 23 636 658 636 658 0.95 13 18 1.2 1.5e+02 4.5 0.1 2 23 663 684 662 684 0.90 14 18 0.0012 0.15 13.9 2.2 2 23 717 739 716 739 0.96 15 18 0.0015 0.19 13.6 4.4 1 23 745 767 745 767 0.98 16 18 0.0022 0.27 13.1 4.1 2 23 774 795 773 795 0.96 17 18 0.00012 0.015 17.1 1.6 1 23 801 824 801 824 0.96 18 18 2.9 3.6e+02 3.3 6.0 3 23 831 852 829 852 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAAATGGAATCAAATCCGAACCATTTGGATTGGATAAAACAGAAACTGCAGACAGTGTGGACGGCACCAATGTTCTGTGGATTATGTTTGGAGAGCCGTGGCAACTTCTGCTCCGTTGACATGGAACTGGTGATCAGCAGTCAGACATTGTCGAAGTGTCTGCAGGATATACTGAACTATGTGTTCAATGAAGATATTGAAAACTTCATGTCAAGTCCGCACTTATGCGACAGTTGTACTGAAAAGACAATACAATCTTACCTCTTCATACACAACACTAAGCAACTGAACAAGATCTTGAACAACTGCATCTCAGACATTGACTCCAAAGTAATTGACATCAATGCTCAGCTTGATGACTCCGTGACATACGACACTGCCAATGTAATGATTGTCCTAGAAAATGACACTGAATTATACAAAACTATAATTGATGTCAAATCCATGACTGAAATAGTGCCTACTTCTAAACCTATAGCAATGAAAGAACCGGTTAACCCTAAACCGCCAGAACCAAAACTAATTCAAGTTGCCAAACCCGTTAAACCAATAGTCATAAAAAGGGACATCGAATGGCCTAAAGAAGTGAAGCAAATCAAAGAACGGAAGGTTTTTAAAGCTGATGGAACTCCTAATATTAGTTTGAAAGAAGGCCATATTGTGATCAAGCCTTTAAGCTCAGTGCGTACATCAGCTCCTCGTTACAATACCTATGAATGTGTTCACTGTCCTGATATTTTCACCACTTATAGATCTTTGAAGGAACATGAAAAAGCCAAGCATAAAAAATCAGTTTATCGTTGCAAATTATGTGACAAGATTTATAATACTCAGCAATATTTGAACATACATTATAAGACCCATTCTAGGGCTAGATGCAAGTTGTGTCAAATTATACTTCCAGAAGGGGATCTAATGGAACATTTGAGGACACTCCACCCTAATCTTGTATACCCTTGCAAGTTTTGTGACCTAGTTTACTACACCCAAGATTCTTTGGacacacattttaaaataagtcATCTAGTCAATGACACAAGAGCTAAATCTCAATGTGTAATGTGTCTGAAGAACTTTATGGATGCGGAAATGAAGAAACATAAGTGCAAGTTCTCTTGCTCAGAATGTTTTGTCATGCCTTGCATACattttaagtacttaaattCTTATAGAGAGCAGGTCTTGAAccatgtgaataaaataaaatgcatggATTGCGACTATGTCACTCGTCGCAAAGAACATCTTATAGGTCATACTAACAGGGAGCATTTGGACCATCATCCCTTTACCTGTGCTGACTGTAACCAACAGTTTTACACTAAGTTGAGTTTAAAAACTCACATCATGCAATTCCATGAGGATCTATTTTGTCCTTACtgtgattttgaatttaaggatAACAGGACTTTAACCACGCATAGGAAAGCCTGCAAGCTGGTTATTAGGCCGTTCCAATGTACCCACTGTGTTGCCTCATTTGATATTGCTGAAGAGTTGACCAGACATGAGAACTTGAAACATAACGAAGGTGTATTCGCTTGCCCATTATGTAAAGGCAGATTCCTTGATGACATAGAACTCCAAGAGCACCATGCAAGGGTTCACGGGGGCATACAATGCAAGAAAAGGAGGAAACATATTGAATGCTCTTTATGTGacattatgtttaaaaatatcaaagaacTGCTTCAACATGAAAAATTTCACAGTGCAGATGAGCTGTATCCTTGTAAAGTCTGttcaaaaaaattcaaatccctGCGAAAATTATACATACACAATCAAAGACACTATACTGACAGAATAAAATGTTCCAGCTGTAACAAAAGGATAGCGGCATCTTTCTACCCGCAACATGCAGTGAGGTGCCCTTACAAAAGAGATGCAAATTTAAATCACATCTGTGAAGTATGTGGCAAGTCATTCCACCTGGAATCGTTACTACGTTTccatctaaaaaaacatttagacCCAACACAATGTCCTCGATGCATCAAGGTTGTCAAACCTGCAAGTCTAAAAAGGCATTTGGAAATAGTCCATGGAGTTGGAACAGACCGTGACGATATAGACAACCTGGCCACTGGGGATACAATACCACAGAAACGTATTAAAGGCATATCACCCAGGCCGTTGATTGAATGTGACCTATGTGGACATACAGTGAGAAAGAAATGTGATTTAGAAGCTCATATGAACCGATATCATCTGAAAATCAAGCCTTATGTCTGTCATATATGCAATAAAGACTTCTGCGGTAAAAATAGACTGAAAGAACACGTTTCTACGCACTCAAATGACAACAGTTGCTTTTGTTCTGTTTGTGGAGGGAAATTTGCTAACCGTGTATGTCTGAAAATGCATATGAGAATGCATACAGGCGAAGCACCATATGCTTGCGATCTTTGCGGTCAAAGATTCAGGTCGTCCAGCATGATGAAGACTCACAGACTAAAGAAACATTTAGAGAAAACTGTCTGTTGTCCACTTTGTGATTGTATGTTCTTTATGGCTAGAGATATGAGGCATCACTTCAAGAAAGTTCATTGGAAATTCAAAGATGGAAGGCCGTTCAATCCTAGGGATGTTGAAGAATTGCCCAAAGAGTTTTATTATCTTTTCGAAGATGGTAGACTGCCGAAACTTAATGTAGAGAAGTGA
- Protein Sequence
- MAEMESNPNHLDWIKQKLQTVWTAPMFCGLCLESRGNFCSVDMELVISSQTLSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDIDSKVIDINAQLDDSVTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTSKPIAMKEPVNPKPPEPKLIQVAKPVKPIVIKRDIEWPKEVKQIKERKVFKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECVHCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKIYNTQQYLNIHYKTHSRARCKLCQIILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQDSLDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCIHFKYLNSYREQVLNHVNKIKCMDCDYVTRRKEHLIGHTNREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDNRTLTTHRKACKLVIRPFQCTHCVASFDIAEELTRHENLKHNEGVFACPLCKGRFLDDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKELLQHEKFHSADELYPCKVCSKKFKSLRKLYIHNQRHYTDRIKCSSCNKRIAASFYPQHAVRCPYKRDANLNHICEVCGKSFHLESLLRFHLKKHLDPTQCPRCIKVVKPASLKRHLEIVHGVGTDRDDIDNLATGDTIPQKRIKGISPRPLIECDLCGHTVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKNRLKEHVSTHSNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYACDLCGQRFRSSSMMKTHRLKKHLEKTVCCPLCDCMFFMARDMRHHFKKVHWKFKDGRPFNPRDVEELPKEFYYLFEDGRLPKLNVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00301536;
- 80% Identity
- -