Aanc026437.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apamea anceps
Gene Symbol
-
Assembly
GCA_951799955.1
Location
OX637525.1:14292460-14297789[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0055 0.46 11.9 0.5 1 23 268 291 268 291 0.94
2 17 9.6e-06 0.00081 20.5 3.4 1 23 296 318 296 318 0.99
3 17 4.9 4.2e+02 2.6 0.2 2 23 322 343 322 343 0.87
4 17 0.0036 0.3 12.5 0.8 1 23 348 371 348 371 0.96
5 17 0.0019 0.16 13.3 0.6 2 23 432 454 431 454 0.95
6 17 0.0017 0.14 13.5 1.8 1 23 460 483 460 483 0.96
7 17 0.00099 0.084 14.2 0.3 3 21 488 506 486 507 0.94
8 17 0.011 0.91 10.9 0.7 1 23 515 538 515 538 0.95
9 17 0.072 6.1 8.3 0.4 2 23 579 600 578 600 0.94
10 17 0.00035 0.03 15.6 2.3 1 23 606 628 606 628 0.97
11 17 0.0058 0.49 11.8 2.7 1 23 664 686 664 686 0.96
12 17 0.007 0.59 11.5 0.2 2 23 691 712 690 712 0.93
13 17 0.02 1.7 10.1 2.6 2 23 740 762 739 762 0.96
14 17 0.00068 0.058 14.7 3.7 1 23 768 790 768 790 0.98
15 17 0.0023 0.19 13.1 4.1 2 23 797 818 796 818 0.96
16 17 7.8e-05 0.0066 17.7 1.2 1 23 824 847 824 847 0.96
17 17 0.3 25 6.4 1.3 2 23 853 875 852 875 0.95

Sequence Information

Coding Sequence
ATGGAACACAAGCTAATTATATTATCAACTGAACGAGAAAGTAACTGGAACGTGGAAGATGCAAGCGAATGCAAGATGGAGGAAGAAGAGTCAACTCAAACAGCTCCAGAGCACTTAGAATGGATAAAACAGAAGCTCAAGACAGTGTGGACATCTCCCATGTTCTGCGGACTATGTCTGGAGAGCCGGGGCAACTTCTGTTCCGTCGACATGGAACTCGTTATCAGCCATCAAACTTTCTCTAAATGTCTGCAGGACATACTGAACTATGTGTTTAATGAAGATATTGAAAACTTCATGTCAAGTCCGCACTTATGCGACAGTTGTACAGAGAAGACAATACAGTCTTACCTCTTTatacacaacacaaaacaactgaacaaaATCCTTCACAACTGCATCTCAGACCTCGACTCCAAAGTAATTGACATCAACGCACAACTTGATGAATCCGTGACATATGATACTGCCAACGTAATGATTGTCCTGGAAAATGACACTGAACTTTACAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCAACTGCTAAACCCATTGCAATGAAAGAACCAGTTAATCCAAAGCCACCGCAGCCAAAAGTTATTCAAGTAGCCAAACATCTTGAACCcatagtaataaaaaaagaaacagaaaaacCTAAAGATGCAATGCCAGTCAAAGTAAGGAAAATTATAAAAGCTGATGGAACTCCAAATATAAGCCTGAAAGAAGGTCACATTGTGATAAAGCCTTTAAGCTCTGTACGGACCTCAGCTCCACGATACAACACTTATGAATGCACTGATTGTCCAGACATTTTCACCACTTACAGATCCTTGAAGGAACATGAAAAGGCCAAGCATAAAAAGTCTGTCTACCGCTGCAAGTTATGCGACAAGACTTATAACACTCAGCAATATTTGAACATACATTACAAGACACATTATAGGGCTAGGTGCAAGTTATGTCAACTTATACTCCCAGAAGGGGATTTAATGGAACATTTGAGGACACTTCATCCTAACTTAGTATACCCGTGTAAGTTTTGTGACTTAGTCTATTACACCCAAGAGTCTTTGGACACACATTTCAAAATAAGCCATTTGGTCAACGACACAAGAGCTAAATCTCAATGTGTTATGTGTCTAAAGAACTTTATGGATGCTGAAATGAAGAAGCATAAATGTAAGTTCTCATGCTCTGAATGTTTTGTCATGCCATGCGTTcactataagtatttaaattctTATAGAGAGCAGGTTTTAAGccatgtaaacaaaataaaatgcttgGATTGCGACTATGTGACTCGACGCAAAGAACATCTAATAGGTCACGCCAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAGTCAGCAGTTCTACACGAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATCTATTTTGTCCGTACTGCGACTTTGAATTTAAAGACAGCAGAACTTTGATAACACATAGGAAAGCCTGCAAGCTTGTTATACGGTCATTCCAGTGTACCCACTGTGTTGCCTCTTTCGACGTTCTAGAAGAGTTGACCAATCATGAGAACTTGAAACATAATGACGGAGTGTACGCTTGCAGTCTTTGTAAAAGCAAATTCCTTATGGAAATTGAACTAGAAGAGCACCATGCGAGGATTCACGGGGGAATACAGTGCAAAAAAAGGAGAAAACACATTGAATGCTCTTTATGTAacataatgtttaaaaatataaaagaaatgcTTCAACATGAAAAGTTTCACGGAGAAGATGAAGTTTATCCATGCAAAGTGTGCTCGAAGAAATTTAAATCATTAAGTAAATTATACATTCATAATCAAAGGCATTATACCAACAGAATAAAATGTTCTGGATGTAACAAAAGGGTAGCCGCATCATTCTACCCCCAGCATGCGGTGAGGTGCCCATATAAAAGAGATAGAACTTTGAGCCATATCTGTGAAGTATGCGGCAAGTCCTTCCACTTGGAATCATTGCTACGCTTCCATCAAAGAATCCACTTGGACCCAAAACCATGTCCTCGTTGCAACAAGGTTATCAAACCTTCAAGTCTAAAAAGGCACATGGAGCTAGTCCATGGAGTTGGTACGGAACAAGAGGCTGAAGAGTCTACTACAGAACCGAGGAAACAAAAAGTTGGATCAAGCAAGCCGTCCATTAAATGTAACTTATGTGGACATGTAGTGAGAAAGAAATGTGACTTAGATGCACATTTGAATCGATATCATCTGAAAATCAAGCCGTACATCTGTCATATATGCAATAAAGACTTCTGCGGTAAAGTTCGACTGAAAGAACATATTTCAACGCACACAAATGACAACAGTTGCTTTTGCTCTGTCTGTGGAGGGAAATTTGCAAACCGTGTGTGTCTTAAAATGCATATGCGAATGCATACTGGGGAAGCACCGTACCCCTGTGATCTATGCGGGCAACGCTTCAGGTCTTCTAGTATGATGAAGAGTCATAGGATTAAGAAACATATGGAGAAAACAATTAGCTGTCCATTATGTGATAGTATGTTCTTCATGGCCAGAGATATGAGACATCACTTCAAGAAGGCTCACTGGAAATTCAAGGATGGAAGGCCGTTTGATCCTAAGGATGTTAAAGAGTTACCCGAGGAGTCGTATTATCTTTTTGAAGATGGTAGATTGCCTAAACTTCATCAAGATTAG
Protein Sequence
MEHKLIILSTERESNWNVEDASECKMEEEESTQTAPEHLEWIKQKLKTVWTSPMFCGLCLESRGNFCSVDMELVISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILHNCISDLDSKVIDINAQLDESVTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTAKPIAMKEPVNPKPPQPKVIQVAKHLEPIVIKKETEKPKDAMPVKVRKIIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHYRARCKLCQLILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRSFQCTHCVASFDVLEELTNHENLKHNDGVYACSLCKSKFLMEIELEEHHARIHGGIQCKKRRKHIECSLCNIMFKNIKEMLQHEKFHGEDEVYPCKVCSKKFKSLSKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDRTLSHICEVCGKSFHLESLLRFHQRIHLDPKPCPRCNKVIKPSSLKRHMELVHGVGTEQEAEESTTEPRKQKVGSSKPSIKCNLCGHVVRKKCDLDAHLNRYHLKIKPYICHICNKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTISCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFDPKDVKELPEESYYLFEDGRLPKLHQD