Msep017270.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061181.1:23209729-23212735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0081 0.77 11.4 0.5 1 23 244 267 244 267 0.94 2 17 8.8e-05 0.0084 17.5 5.9 1 23 272 294 272 294 0.99 3 17 3.9 3.7e+02 2.9 0.1 2 23 298 319 298 319 0.86 4 17 0.025 2.4 9.8 0.8 1 23 324 347 324 347 0.96 5 17 0.0011 0.11 14.1 0.8 2 23 408 430 407 430 0.96 6 17 0.00066 0.063 14.8 1.8 1 23 436 459 436 459 0.96 7 17 0.0021 0.2 13.2 0.7 3 21 464 482 462 483 0.94 8 17 0.03 2.9 9.6 0.1 1 23 491 514 491 514 0.91 9 17 0.047 4.4 9.0 0.3 2 23 555 576 554 576 0.94 10 17 0.00059 0.056 14.9 2.2 1 23 582 604 582 604 0.97 11 17 0.0058 0.55 11.8 2.7 1 23 640 662 640 662 0.96 12 17 0.18 17 7.2 0.2 2 23 667 688 666 688 0.93 13 17 0.0018 0.17 13.5 1.4 2 23 723 745 722 745 0.96 14 17 0.00038 0.036 15.6 3.7 1 23 751 773 751 773 0.98 15 17 0.0023 0.22 13.1 4.1 2 23 780 801 779 801 0.96 16 17 6.4e-05 0.0061 18.0 1.5 1 23 807 830 807 830 0.97 17 17 1.4 1.3e+02 4.3 4.0 3 23 837 858 835 858 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAGCAGGGCTCACCTTCAACAAAACAGATCCAAAGCATTTGGAATGGATAAAAGAAAAACTCAAGACCGTATGGACATGTCCCACGTTCTGCGGGCTCTGCCTCGAGGGCTACAGCAACTTCTGTTCCGTAGACGTGGAGCTGGTGATCAGCCATCAGACATTCTCTAAATGTCTGCGGGATATACTGAATTATGTGTTTAATGATGATGTAGAAAATTTCATGTCAAGTCCAAACTTATGCGACAGTTGTGCAGAGAAGACCATACAAGCCTATCTCTTCATACACAACACAAAACAGCTGAACAAAATCATCACCAACTGCATCTCGGACCTTGATTCCAAAGTGATTGACATCAACACACAACTGGATGACTCCATGACATACGATACAGCCAACGTGATGATTGTCTTAGAAAACGACACAGAACTATACAAGACAATCATCGATGTCAAATCCATGACCGAAGTTGTGCCAACCACTAAACCTATTGCTATGAAAGATCCAGTAATCCCTAAACCAGAACCAAAAGTGGTTCAGGTAGCTAAACCTGCTAAACCTATAGTAATAAAAAGGGAACAAGAAAAACCAAAGGAAGTAAAACaagttaaagaaagaaagattgtAAAGGCTGATGGAACTCCAAACATCAGTTTGAAAGAAGGTCACATTGTTATAAAGCCATTAAGTTCTGTAAGAACCTCAGCGCCTCGATACAACACGTATGAATGCACCGAGTGTCCAGATATATTCACCACTTACAGATCACTGAAAGAACATGAAAAAGCCAAGCATAAAAAGTCTGTTTACCGATGCAAGCTGTGTGATAAAACTTATAATACTCAACAGTATTTGTGCATACATTACAAGACACATTCCCGGGCTAGATGTAAGTTATGCCAAGTTATATTACCAGAAGACGATTTGATGGAACATTTAAGGACAATTCACCCTAATTTAGTGTACCCTTGCAAGTTCTGTGATCTAGTCTACTACACGCAAGAGTCTATGGACacacattttaaaataagtcACTTAGTCAATGACACTAAAACGAAATCCCAATGTGTGATGTGTCTCAAAAACTTTGTGGATGCAGAAATGAAGAAGCATAAGTGCAAGTTCTCATGCTCCGAGTGTTTTGTCATGCCGTGCATTCACTATAGATATTTAAATTCCTACAGAGAGCAAGTCTTAGGCCATGCTAATAAAATACAATGCTTGGACTGCGATTATGTTACTCGACGCAAAGAACATCTCATTGGTCACACGAACAGGGAGCATTTGGACCATCATCCATTCACTTGTGCAGATTGTAACCAACAGTTCTATACAAAGTTGAGTTTAAAAACACATATCATGCAATTCCATGAGGATCTGTTTTGTCCGCACTGTGACTTTGAGTTCAAGGATAGCAGGACTTTGGTAACGCATAGGAAGGCTTGTAAGCTGGTGGTACGGCCATTCAAGTGTACCCAATGTGTGGCCTCGTTTGACGTTGCCGAAGAGTTGAGCAGACATGAAGCTTTGAAGCACAGTGAAGGAGTACAGTCTTGCTCTCTTTGTAAAAGCAAATTCCTTACTGACATAGAGCTACAAGAACACCATGCCAGGGTTCACGGAGGCATACAATGCAAGAAAAGGAGAAAACATATAGAATGTTCCCTATGCGACATAatgtttaaaaacataaaagaaaTGCTTCAACATGAAAAATTCCACAACGCAGATGAGGTTTACCCTTGTAAAGTGTGCTCGAAAAGCTTCAAATCGTTAAGGAAACTGTACATACACAATCAAAGGCATTATACTAACAGAATAAAATGTTCTGGTTGTAATAAACGAGTCGCTGCTTCGTTCTACCCGCAGCACGCAGTGAGGTGCCCTTACAAAAGAGATACTACTCTCAGTCATATCTGTGAAGTATGTGGCAAGTCCTTCCACCTGGAGTCCTTGCTACGTTTCCATCAGAGAATCCACATGGAGCCCCAACCGTGTCCTCGTTGCAACAAGGTCATCAAACCGACAAGTATGAAAAGGCATATGGAGCTAGTCCATGCAGAAGAAGATGATAACAACGATTGGTCCGTCCAAACAGTGTCCGCTATGGAAACCAAACCTAGGAAAATGAAAGGCATATCAAGCAAACCACCGTCAATTGAGTGTGATTTATGTGGGCATGCGGTTAGAAAGAAATGTGATCTAGAAGCTCATATGAACAGATATCATTTGAAAATCAAGCCATACGTCTGCCATATATGTAATAAAGATTTCTGTGGTAAAGTCCGATTGAAAGAACATATATCAACGCATACAACGGACAACAGTTGCTTCTGTTCCGTTTGTGGAGGGAAGTTTGCTAACCGTGTGTGCCTTAAAATGCATATGAGAATGCATACGGGTGAAGCACCGTATCCCTGTGATCTTTGCGGACAGAGATTCAGGTCTTCGAGCATGATGAAGACACACAGACTAAAGAGACATTTAGAGAAAACTGTTTGCTGTCCACTTTGTGATAGTATGTTTTACATGGCCAGAGATATGAGGCATCATTTCAAGAAAACTCATTGGAAATTCAAGGATGGGAGGCCGTTCAATCCTAAAGATGTTGAAGAGTTGCCTAAGGAGTGTTATTATCTTTTTGAAGATGGTCGACTGCCGAAAATTAATCAAGACTAG
- Protein Sequence
- MEEAGLTFNKTDPKHLEWIKEKLKTVWTCPTFCGLCLEGYSNFCSVDVELVISHQTFSKCLRDILNYVFNDDVENFMSSPNLCDSCAEKTIQAYLFIHNTKQLNKIITNCISDLDSKVIDINTQLDDSMTYDTANVMIVLENDTELYKTIIDVKSMTEVVPTTKPIAMKDPVIPKPEPKVVQVAKPAKPIVIKREQEKPKEVKQVKERKIVKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTECPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLCIHYKTHSRARCKLCQVILPEDDLMEHLRTIHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTKTKSQCVMCLKNFVDAEMKKHKCKFSCSECFVMPCIHYRYLNSYREQVLGHANKIQCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPHCDFEFKDSRTLVTHRKACKLVVRPFKCTQCVASFDVAEELSRHEALKHSEGVQSCSLCKSKFLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADEVYPCKVCSKSFKSLRKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRIHMEPQPCPRCNKVIKPTSMKRHMELVHAEEDDNNDWSVQTVSAMETKPRKMKGISSKPPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKVRLKEHISTHTTDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKTHRLKRHLEKTVCCPLCDSMFYMARDMRHHFKKTHWKFKDGRPFNPKDVEELPKECYYLFEDGRLPKINQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_01031398;
- 80% Identity
- -