Hrec027626.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637325.1:1247246-1250319[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.069 2.5e+03 -0.3 0.0 26 43 462 479 456 490 0.87 2 6 0.19 6.7e+03 -1.7 0.0 24 48 489 513 485 515 0.90 3 6 1e-06 0.036 15.1 0.1 24 48 664 687 660 690 0.91 4 6 4e-05 1.4 10.0 0.2 9 49 698 739 694 745 0.86 5 6 0.011 4.1e+02 2.2 0.1 21 51 796 826 791 828 0.87 6 6 0.00016 5.6 8.1 0.1 17 49 820 852 817 857 0.86
Sequence Information
- Coding Sequence
- ATGGAGCAAGAGGAGTCAAGTTACACAGCTCCTGAGCACTTAGAATGGATAAAACAGAAACTCAAGACAGTGTGGACGTCTCCCACATTCTGCGGACTATGTCTGGAGAACCGGGGCAACTTCTGTTCTGTAGACATGGAACTCGTGATCAGCCATCAGACTTTCTCTAAATGTCTGCAAGATATACTGAACtatgtatttaatgaagatATTGAAAACTTTATGTCAAGCCCGCACTTATGCGACAGCTGTACAGAGAAGACAATACAATCATACCTCTTTATACACAACACAAAGCAACTTAATAAAATTCTAAACAACTGCATCTCAGATCTTGACTCTAAAGTAATTGACATCAACGCACAACTTGATGACACTGTGACATACGACAATGCCAATGTTATGATTGTCTTGGAAAATGACACTGAACTTTACAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCCACTGCTAAACCTATTGCAATGAAAGAAACAATTAATCCAAACCCACCACAGGCAAAAGAAGATCAAGTCCCCAAAGTTCATAAACCCATAGTTATTAAAACGGAAACGGAAAAACCTAAGGAAGTGAAACCAACCAAAGTTAGGAAAGTTATCAAAGCTGATGGAACTCCAAACATTACCCTGAAAGAAGGTCACATTGTGATAAAGCCTTTGAGCTCAGTACGAAGCTCAGCCCCACGGTACAACACATACGAGTGCACCGATTGTCCAGATATTTTCACCACTTACAGATCCTTAAAGGAACATGAGAAAGCCAAGCACAAAAAGTCAGTATACCGCTGCAAGTTATGCGAAAAGACTTACAACACTCAGCAATATTTGAACATACATTATAAGACGCATTGTCAGGCTAGATGCAAGTTATGTCAAATTATACTCCCAGAAGGGGATTTAATGGAGCATTTGCGGACACTTCATCCTAATTTAGTATACCCTTGCAAGTTTTGCGACCTAGTCTACTATACCCAAGAGTCTTTGGATACACATTTCAAAATAAGCCATTTAGTCAACGACACAAGAGCTAAATCTCAATGCGTAATGTGTCTAAGGAACTTTATGGATGCTGAAATGAAGAAGCATAAATGCAAGTTTTCATGCTCTGAGTGTTTTGTGATGCCATGTGTTcattataagtatttaaattctTATAGAGAGCAGGTTTTAAGCCatgtgaacaaaataaaatgcttgGATTGCGACTATGTTACTCGGCGCAAAGAACATCTAATAGGTCACGCTAACAGAGAGCATTTGGATCATCATCCATTTACTTGTGCCGATTGTAACCAACAGTTTTACACTAAGTTGAGTTTAAAAACACACATCATGCAGTTCCATGAAGATCTATTCTGTCCGTACTGTGACTATGAATTCAAAGACAGCAGAACTTTGAATACACATAGGAAAGCTTGCAAGCTTGTTATACGGCCATTCCAATGTACCCACTGTGTTGCATCATTCGACCTCGCGGAAGAGTTGACCAATCATGAGAACTTGAAGCACAATGAAGGAGTTTATGCTTGCACCCTTTGTAAAAGCAAATTCCTTCTTGAAATTGAACTTGAAGAACATCATGCGAGGATTCATGGCGGAATACAATGCAAGAAACGGAGAAAACACATTGAATGTTCTGTTTGCGacattatgtttaaaaatattaaagaaatgcTTGAACATGAGAAGTTCCACCCGGAATATGAATTATACCCGTGCAAAgtatgttcgaaaaaattcgTATCTTTAAGTAAATTATACATTCACAATCAAAGGCATTATACCAATAGAATAAAATGTTCTGGATGTAACAAGAGGGTAGCTGCATCATTCTATCCCCAACATGTGGTGAGGTGCCCATATAAAAGGGATATAACTTTGAGCCATATCTGTGAGGTATGTGGCAAGTCCTTCCACCTGGAGTCGTTGCTACGTTTCCATCAAAGAATCCACTTAGATCCACAGCCATGTCCTAAATGCAACAAGGTTATAAAACCTTCAAGTTTAAGAAGGCATTTGGAGCTAGTCCATGGAGTTGGCACGGAGCAAGTGGAGGACGATCCCAACTCTACAGAACCAAAAAGACAAAGAGGTGGACCGAGTAAGCCATCAATTAAATGTAACATATGTGGACATATAGTGAGAAAGAAATGTGACTTGGACGCTCACTTGAACCgatatcatttaaaaatcaaGCCCTACATCTGCCATATATGCAGTAAAGACTTCTGCGGTAAAGTTAGACTGAAAGAACATATTGCAACCCACACAAATGATAACAGTTGCTTTTGTTCTGTTTGTGGAGGGAAATTTGCCAACCGTGTCTGTCTTAAAATGCACATGAGAATGCATACAGGAGAAGCACCATACCCCTGTGACATTTGTGGCCAAAGATTCAGGTCTTCTAGTATGATGAAGAGTCATAGAGTAAAGAAGCATATGGAAAAAACAATTAGCTGTCCACTGTGTGATAGTATGTTCTTTATGGCCAGAGATATGAGACATCACTTCAAGAAAGCTCATTGGAAGTTCAAAGACGGAAGGCCGTTCAATCCTAAGGATGTTAAAGAGTTACCAGAGGAGTCGTATTATCTTTTTGAAGATGGTAGATTGCCGAAACTTAATCAGGATTAG
- Protein Sequence
- MEQEESSYTAPEHLEWIKQKLKTVWTSPTFCGLCLENRGNFCSVDMELVISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDLDSKVIDINAQLDDTVTYDNANVMIVLENDTELYKTIIDVKSMTEIVPTAKPIAMKETINPNPPQAKEDQVPKVHKPIVIKTETEKPKEVKPTKVRKVIKADGTPNITLKEGHIVIKPLSSVRSSAPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCEKTYNTQQYLNIHYKTHCQARCKLCQIILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLRNFMDAEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPYCDYEFKDSRTLNTHRKACKLVIRPFQCTHCVASFDLAEELTNHENLKHNEGVYACTLCKSKFLLEIELEEHHARIHGGIQCKKRRKHIECSVCDIMFKNIKEMLEHEKFHPEYELYPCKVCSKKFVSLSKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHVVRCPYKRDITLSHICEVCGKSFHLESLLRFHQRIHLDPQPCPKCNKVIKPSSLRRHLELVHGVGTEQVEDDPNSTEPKRQRGGPSKPSIKCNICGHIVRKKCDLDAHLNRYHLKIKPYICHICSKDFCGKVRLKEHIATHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDICGQRFRSSSMMKSHRVKKHMEKTISCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFNPKDVKELPEESYYLFEDGRLPKLNQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00121735;
- 80% Identity
- iTF_00831524;