Lole041435.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493412.1:16699641-16702085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 2 10.5 0.3 1 23 168 191 168 191 0.94 2 18 7.5e-05 0.01 17.7 5.9 1 23 196 218 196 218 0.99 3 18 5.8 7.8e+02 2.3 0.2 3 23 223 243 222 243 0.84 4 18 0.021 2.9 10.0 0.8 1 23 248 271 248 271 0.96 5 18 0.0016 0.22 13.5 0.6 2 23 332 354 331 354 0.95 6 18 0.00056 0.075 14.9 1.8 1 23 360 383 360 383 0.96 7 18 0.0018 0.24 13.3 0.8 3 21 388 406 386 407 0.93 8 18 0.0068 0.91 11.5 0.6 1 23 415 438 415 438 0.95 9 18 1.6 2.1e+02 4.1 0.7 1 23 443 466 443 466 0.81 10 18 0.04 5.3 9.1 0.3 2 23 479 500 478 500 0.94 11 18 0.00072 0.096 14.6 2.3 1 23 506 528 506 528 0.97 12 18 0.0046 0.62 12.1 2.7 1 23 564 586 564 586 0.96 13 18 0.005 0.66 12.0 0.1 2 23 591 612 590 612 0.93 14 18 0.0015 0.2 13.6 1.4 2 23 642 664 641 664 0.96 15 18 0.00032 0.043 15.7 3.7 1 23 670 692 670 692 0.98 16 18 0.0019 0.26 13.2 4.1 2 23 699 720 698 720 0.96 17 18 1.6e-05 0.0022 19.8 1.2 1 23 726 749 726 749 0.97 18 18 3.1 4.2e+02 3.2 4.3 3 23 756 777 754 777 0.95
Sequence Information
- Coding Sequence
- ATGTCAAGTCCGCACCTATGCGACAGTTGTACTGAGAAGACAATACAGTCTTACCTCTTCATGCACAATACAAAACAGCtgaacaaaattataaacaactGCATTTCAGACCTCGATTCCAAAGTGATAGACATCAACACACAACTTGACGATTCTATGACATATGATACTGCCAATGTAATGATTGTCCTAGAAAATGATACGGAACTATACAAAACAATCATTGATGTCAAGTCTATGACTGAAGTTGTGCCAACCGCTAAACCCATTGCAATGAAAGAGCACGTCATCCCAAAGCCACAGCCAAAAGTTATTCAAGTTGCCAAGCCTCATAAACCGATAGTTATTAAAAGGGAAATAGAAAAACCAAAGGAATTGAAGCAAGTCAAAGAAAGAAAGGTTACAAAAGCTGATAGTACTCCAAATATAACTTTGAAAGAAGGTCACATTGTTATAAAACCTCTGAGCTCGGTGAGAACCTCAGCTCCTCGGTACAATACGTATGAATGCGCTGACTGCCCAGACATATTCACCACATACAGATCTTTGAAGGAACATGAGAAAGCCAAGCATAAAAAGTCTGTTTACCGTTGCAAGCTTTGCGACAAGACTTATAACACTCAGCAATATTTGTGCATACATTACAAAACACATTCTCGGGCTAGATGTAAGTTGTGCCAAGTTATATTACCAGAAGAGGAGTTAATGGAACATTTGAGGACTCTACATCCTAATCTGGTGTACCCTTGCAAATTCTGTGATCTAGTCTATTACACCCAAGAGTCTATGGACACACATTTCAAAATAAGCCACTTAGTCAATGACACAAAAACTAAATCTCAATGTGTTATGTGCCTTAAGAACTTTGTCGATGCTGAAATGAAGAAGCATAAATGCAAGTTTTCTTGCTCAGAGTGTTTTGTTATGCCTTGCATTCACTTCCGGTTTCTTAATTCTTATAGGGAGCAGATCTTAGGtcatgcaaataaaataaaatgcttgGATTGTGACTATGTGACTCGACGCAAAGAACATCTAATCGGTCACGCTAACAGAGAGCATTTGGACCATCATCCATTTACTTGTGCCGATTGCAACCAACAGTTTTACACTAAGTTAAGTTTGAAAACACACATCATGCAATTCCATGAGGATCTATTCTGTCCTCATTGTGACTTTGAATTCAAGGATAGCAGGACTTTGATTACTCATAAGAAAGCATGCAAGCTTGTGATACGACCGTTCCAATGTACCCACTGTGTTGCTTCATTCGACATCGCTGAAGAGTTGACGAGGCACGAAAACTTGAAGCATAATGAAGGAGTTTACTCTTGCCCCCTTTGTAAAAGCAAGTTCCTAACTGACATAGAACTGCAAGAACATCATGCGAGGGTTCACGGTGGTATACAATGCAAGAAAAGAAGGAAACATATTGAATGCTCTTTATGCGacataatgtttaaaaatattaaagaaatgcTTCAACATGAAAAATTTCACAATGCAGATGAGCTTTTCCCTTGTAAAGTTTGCTCGAAAAGCTTCAAATCGTTAAGGAAATTGTACATTCATAATCAAAGGCACTATACCAACAGAATAAAATGTTCGGGTTGTAACAAGAGGGTAGCAGCATCATTCTACCCTCAGCACGCAGTGCGGTGCCCGTATAAAAGAGATACAACTCTAAGCCATATCTGTGAAGTCTGTGGAAAGTCCTTTCATCTGGAATCCTTGCTACGTTTCCATCAGAGGGTCCACATGGAACCGCAACCATGTCCTATTTGCAACAAGGTTATCAAGCCTACTAGTTTGAAAAGGCATATGGAGCTAGTTCACGGACAAGAAGAGGACGACCAACACCCAACCAGCAATACGGAATACAAGCCAAAGAAAATGAAAGGTTTATCTAGCAAGCCAACAATAGAATGTGATTTATGCGGACATGCGGTGAGAAAGAAGTGTGACTTAGAAGCACATATGAACCGATATCATCTGAAAATCAAGCCGTATGTCTGTCATATATGCAACAAAGACTTCTGTGGTAAAGTTCGGCTGAAAGAACACATATCAACACATACAAACGACAACAGTTGCTTCTGTTCCGTTTGTGGGGGGAAATTTGCGAATCGGGTGTGCCTTAAAATGCATATGAGAATGCATACCGGGGAAGCACCATACCCCTGTGATATTTGCGGCCAGAGATTCAGGTCTTCCAGCATGATGAAGACCCATAGACTAAAAAGGCATTTGGAGAAAACAGTTTGTTGTCCTTTGTGTGACAGTATGTTCTTTATGGCCAGAGACATGAGGCATCACTTCAAGAAAACTCATTGGAAGTTCAAAGATGGAAGGCCTTTTAATCCTAAAGATGTTGAGGAGTTGCCCAAGGagtattattatctatttgaaGATGGTCGACTGCCGAAACTTAATCAAGAATCATGA
- Protein Sequence
- MSSPHLCDSCTEKTIQSYLFMHNTKQLNKIINNCISDLDSKVIDINTQLDDSMTYDTANVMIVLENDTELYKTIIDVKSMTEVVPTAKPIAMKEHVIPKPQPKVIQVAKPHKPIVIKREIEKPKELKQVKERKVTKADSTPNITLKEGHIVIKPLSSVRTSAPRYNTYECADCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLCIHYKTHSRARCKLCQVILPEEELMEHLRTLHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTKTKSQCVMCLKNFVDAEMKKHKCKFSCSECFVMPCIHFRFLNSYREQILGHANKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPHCDFEFKDSRTLITHKKACKLVIRPFQCTHCVASFDIAEELTRHENLKHNEGVYSCPLCKSKFLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADELFPCKVCSKSFKSLRKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRVHMEPQPCPICNKVIKPTSLKRHMELVHGQEEDDQHPTSNTEYKPKKMKGLSSKPTIECDLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDICGQRFRSSSMMKTHRLKRHLEKTVCCPLCDSMFFMARDMRHHFKKTHWKFKDGRPFNPKDVEELPKEYYYLFEDGRLPKLNQES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_01031398;
- 80% Identity
- -