Xrho030689.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- -
- Assembly
- GCA_963853795.1
- Location
- OY970782.1:1409894-1413206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.02 2 10.0 0.3 1 23 243 266 243 266 0.94 2 17 9e-06 0.00092 20.6 3.4 1 23 271 293 271 293 0.99 3 17 4.1 4.2e+02 2.8 0.1 2 23 297 318 297 318 0.88 4 17 0.0033 0.34 12.5 0.8 1 23 323 346 323 346 0.96 5 17 0.0013 0.13 13.8 1.1 2 23 407 429 406 429 0.96 6 17 0.0046 0.47 12.0 2.0 1 23 435 458 435 458 0.95 7 17 0.00061 0.062 14.8 0.5 3 21 463 481 461 482 0.94 8 17 0.0074 0.76 11.4 0.6 1 23 490 513 490 513 0.95 9 17 0.044 4.4 9.0 0.3 2 23 554 575 553 575 0.94 10 17 0.00046 0.047 15.2 1.8 1 23 581 603 581 603 0.97 11 17 0.0061 0.62 11.7 2.3 1 23 639 661 639 661 0.96 12 17 0.033 3.4 9.4 0.2 2 23 666 687 665 687 0.93 13 17 0.001 0.1 14.1 2.1 2 23 720 742 719 742 0.96 14 17 0.00091 0.093 14.3 3.6 1 23 748 770 748 770 0.98 15 17 0.0021 0.22 13.1 4.1 2 23 777 798 776 798 0.96 16 17 0.00012 0.012 17.1 1.6 1 23 804 827 804 827 0.96 17 17 0.99 1e+02 4.7 5.6 3 23 834 855 832 855 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAAATGGAATCAAATCACATTGATCCCAACCACTTGGATTGGATAAAACAGAAACTCAAGACCGTGTGGACAGCTCCAACGTTCTGTGGACTATGTTTGGAGAACCGTGGCAACTTCTGTTCTGTTGACATGGAACTGGTCATCAGCAGTCAGACATTCTCGAAGTGCCTACAGGATATACTGAACTATGTGTTCAATGAAGATATTGAAAACTTCATGTCGAGTCCACACTTATGTGATAGTTGTACAGAAAAGACAATACAATCTTACCTCTTCATACACAACACTAAACAGTTGAACAAGATCTTGAACAACTGCATCTCAGACATAGACTCCAAAGTAATTGACATCAATGCACAGCTCGATGACTCCGTGACATACGACACTGCCAACGTAATGATTGTCCTAGAAAATGACACTGAATTATACAAAACTATCATTGATGTTAAATCCATGACTGAAATAGTGCCTACTTCCAAACCTATAGCAATGAAAGAACCTGGTAACCCTAAACCGCCAGATCAAAAACTAATTCAAGTTGCCAAACCCCATAAACCAATAGTTATAAAAAGGGAAATAGAAAAGCCTAAGGAAGTGAAGCAAATCAAAGAAAGGAAAGTTTTTAAAGCTGATGGAACTCCTaatattagtttgaaagaaGGCCATATTGTGATCAAGCCTTTAAGTTCAGTGCGTACATCAGCTCCTCGTTACAATACTTATGAATGTGTTGACTGTCCTGATATTTTCACCACCTATAGATCTTTGAAGGAACACGAAAAAGCCAAGCATAAAAAATCGGTTTACCGCTGCAAATTATGTGACAAGACTTACAACACTCAGCAATATTTGAACATACATTATAAGACTCATTCTAGGGCTAGATGCAAGTTGTGTCAAATTATACTCCCAGAAGGGGATCTAATGGAGCATTTGAGGACACTCCACCCTAATTTAGTATACCCATGCAAGTTTTGCGACCTAGTTTACTACACCCAAGAGTCTTTGGACACACATTTCAAAATAAGTCATCTAGTCAATGACACAAGAGCTAAATCTCAATGTGTAATGTGTCTGAAGAACTTTATAGACGCAGAAATGAAGAAGCATAAGTGCAAGTTCTCTTGCTCAGAATGTTTTGTCATGCCTTGCGTACATTTTAGGTACTTAAATTCCTATCGAGAGCAGGTCTTAAGccatgtgaataaaataaaatgcatggATTGCGACTATGTCACTCGTCGCAAAGAACATCTTATAGGTCACACTAACAGGGAGCATTTGGACCATCacccctttacatgtgctgacTGTAGTCAACAGTTTTACACTAAGTTGAGTTTGAAAACTCACATCACGCAATTCCATCAAGATCTATTTTGTCCTTATTGTGATTTTGAATTTAAGGATAACAGAACTTTAACCACGCATAGGAAAGCCTGTAAGCTGGTTATTAGGCCATTCCAATGTACCCACTGTGTTGCGTCATTTGATATTGCTGAAGAGTTGACTAGACATGAGAACTTGAAACATAATGAAGGAGTTTATGCTTGCACACTATGTAAAAGCAGATTCCTTGCTGACATAGAACTCCAAGAGCACCATGCGAGGGTTCACGGGGGCATACAATGCAAAAAAAGGAGAAAACATATTGAATGCTCTTTGTGTGACATAatgtttaaaaacataaaagaaatgCTTCAACATGAAAAATTCCACAATGCAGATGAGCTGTACCCATGCAAAGTCTGCCCTAAAAAGTTCAAATCCCTGCGAAAACTATACATTCACAATCAAAGACATTATACTAACAGAATAAAATGTTCCACCTGTAACAAAAGGATAGCGGCATCTTTCTACCCGCAACATGCAGTGAGGTGCCCTTACAAAGGAGATGCCAATTTAAGCCACATCTGTGAAGTATGTGGCAAGTCATTCCACCTGGAATCGTTACTACGTTTCCATTTAAGAATCCATTTAGAGCCAACACAATGTCCTCGATGCAACAAGGCTGTCAAACCTGCAAGTCTAAAAAAGCATTTGGAACTAGTGCATGGAGTTGGAACAGACCACGACGACATAGACGACCTGGCCAATGGTGATACGATACCAAGGAAACGTATTAAAGGCATGTCAGCCAGGCCAATGATTGAATGTGACCTATGTGGACATTCAGtgagaaaaaaatgtgatttagaAGCTCATATGAATCGATATCATCTGAAAATCAAGCCGTATGTCTGCCATATATGCAGTAAAGACTTCTGTGGTAAAGTTAGATTGAAAGAACACATTTCTACACACTCAAGTGACAACAGTTGCTTTTGTTCCGTTTGTGGAGGGAAATTTGCTAACCGTGTATGTCTGAAAATGCATATGAGAATGCATACGGGCGAAGCGCCTTACGCTTGTGATCTTTGTGGTCAAAGATTCCGGTCTTCCAGCATGATGAAGACTCATAGATTAAAGAAACATTTGGAGAAAACCGTATGCTGTCCACTTTGTGACTGTATGTTCTATATGGCCAGAGATATGAGGCATCACTTCAAGAAAGCACATTGGAAATTCAAAGATGGAAGGCCGTTCAATCCTAGGGATGTTGTAGAATTGCCTAAGGAATTATATTACCTTTTTGAAGATGGTAGACTGCCGAAACTTAATCTAGACTAG
- Protein Sequence
- MAEMESNHIDPNHLDWIKQKLKTVWTAPTFCGLCLENRGNFCSVDMELVISSQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDIDSKVIDINAQLDDSVTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTSKPIAMKEPGNPKPPDQKLIQVAKPHKPIVIKREIEKPKEVKQIKERKVFKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECVDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHSRARCKLCQIILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFIDAEMKKHKCKFSCSECFVMPCVHFRYLNSYREQVLSHVNKIKCMDCDYVTRRKEHLIGHTNREHLDHHPFTCADCSQQFYTKLSLKTHITQFHQDLFCPYCDFEFKDNRTLTTHRKACKLVIRPFQCTHCVASFDIAEELTRHENLKHNEGVYACTLCKSRFLADIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADELYPCKVCPKKFKSLRKLYIHNQRHYTNRIKCSTCNKRIAASFYPQHAVRCPYKGDANLSHICEVCGKSFHLESLLRFHLRIHLEPTQCPRCNKAVKPASLKKHLELVHGVGTDHDDIDDLANGDTIPRKRIKGMSARPMIECDLCGHSVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKVRLKEHISTHSSDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYACDLCGQRFRSSSMMKTHRLKKHLEKTVCCPLCDCMFYMARDMRHHFKKAHWKFKDGRPFNPRDVVELPKELYYLFEDGRLPKLNLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_01085703;
- 80% Identity
- -