Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388047.1:18427988-18432030[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.31 8.9e+03 -2.4 0.0 27 43 464 480 458 484 0.88

2 6 0.074 2.1e+03 -0.4 0.0 24 48 490 514 487 518 0.91

3 6 1.6e-06 0.046 14.5 0.1 23 48 664 688 659 692 0.88

4 6 0.0058 1.7e+02 3.1 0.1 8 49 696 741 693 747 0.72

5 6 0.0023 68 4.4 0.1 21 51 798 828 792 830 0.85

6 6 0.00031 9.1 7.2 0.2 22 49 827 854 821 859 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.31	8.9e+03	-2.4	0.0	27	43	464	480	458	484	0.88
2	6	0.074	2.1e+03	-0.4	0.0	24	48	490	514	487	518	0.91
3	6	1.6e-06	0.046	14.5	0.1	23	48	664	688	659	692	0.88
4	6	0.0058	1.7e+02	3.1	0.1	8	49	696	741	693	747	0.72
5	6	0.0023	68	4.4	0.1	21	51	798	828	792	830	0.85
6	6	0.00031	9.1	7.2	0.2	22	49	827	854	821	859	0.87

Sequence Information

Coding Sequence: ATGGAGCAAGCAGTATCTTATCACAACCACACAGATCCAAAGCACATAGAATGGATAAAACAGAAACTCAAGACTGTGTGGACGGCTCCCACATTCTGCGGACTATGTCTGGAGGGTCACGGTAACTTCTGTTCCGTGGACATGGAGCTAGTCATCAGCCATCAGACATTCTCTAAATGTCTTCGGGACATCCTGAACTATGTGTTTAATGATGATATTGAAAACTTCATGTCAAGTCCGCACTTATGTGACAGTTGTACTGAGAAGACAATACAATCTTACCTCTTCATACACAACACGAAACAGCTGAACAAAATCATAAACAACTGCATTTCAGACCTCGATTCCAAAGTGATAGACATCAACACACAACTTGACGATTCCGTGACTTACGATACTGCCAATGTAATGATTGTCCTAGAAAATGATACGGAACTATACAAAACAATCATTGATGTCAAGTCTATGACTGAAGTTGTGCCAACTGCTAAACCCATTGCAATGAAAGACCACGTTATCCCTAAGCCACAGCCAAAAGTTATTCAGGTTGCCAAGCCTCATAAACCAATAGTTATAAAAAAGGAAATAGAAAAACCTAAGGAAGTGAAGCAAGTCAAAGAAAGGAAGGTTCCAAAAGCTGATGGTACTCCAAATATAACTTTGAAAGAAGGTCACATCGTTATAAAACCTCTAAGCTCGGTGAGAACCTCAGCTCCTCGGTACAATACGTATGAATGCGCTGACTGCCCAGACATATTCACCACTTACAGATCCTTGAAGGAACATGAGAAAGCCAAGCATAAAAAGTCTGTTTACCGTTGCAAGCTTTGCGACAAGACTTATAACACTCAGCAATATTTGTGCATTCATTACAAAACACATTCTCGGGCTAGATGTAAGTTGTGCCAAGTTATATTACCAGAGGAGGAGTTAATGGAACATTTGAGGACTCTACATCCTAACCTCGTGTACCCTTGCAAGTTCTGTGATCTAGTCTATTACACCCAAGAGTCTATGGACACACATTTCAAAATAAGCCACTTAGTCAACGACACAAAAACTAAATCTCAATGTGTTATGTGCCTTAAGAACTTTGTTGACGCTGAAATGAAGAAGCATAAATGCAAGTTTTCATGTTCCGAATGTTTTGTTATGCCTTGCATTCACTTCAGGTATCTTAATTCTTATAGGGAGCAGGTCTTAGGTCATACAAATAAAATAAAATGCTTAGATTGTGACTATGTGACTCGACGCAAAGAACATCTAATCGGTCATGCTAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAACCAACAGTTTTACACTAAGTTAAGTTTGAAAACACACATCATGCAATTCCATGAAGATCTATTCTGTCCCCATTGTGACTTTGAATTCAAGGATAGCAGGACTTTGATAACTCATAAGAAAGCATGCAAGCTTGTGATACGGCCGTTCAAATGTACCCACTGTGTTGCTTCATTCGACCTTGCTGAAGAGTTGACGAAGCACGAAAACTTGAAGCATAATGAAGGAGTGTACTCTTGCCCCCTTTGTAAAAGCAAGTTCCTAACTGATATAGAACTGCAAGAACATCATGCGAGGGTTCACGGGGGTATACAATGCAAGAAAAGGAGGAAACATATTGAATGCTCTTTATGCGACATTATGTTTAAAAATATAAAAGAAATGCTTCAACATGAAAAATTCCACAATGCAGATGAGCTTTACCCTTGTAAAGTTTGCTCGAAAAGCTTCAAATCGTTAAGGAAATTGTACATTCATAATCAAAGGCACTATACCAACAGAATAAAATGTTCGGGTTGTAACAAGAGGGTAGCAGCATCATTCTACCCTCAGCATGCGGTACGGTGCCCATATAAAAGAGATACAATTCTAAGCCATATCTGTGAAGTCTGTGGAAAGTCCTTTCATCTGGAATCCTTGCTACGTTTCCATCAGAGGGTCCACATGGAACCGCAACCATGTCCTATTTGCAACAAGGTTATCAAGCCTACTAGTTTGAAAAGACATATGGAGCTAGTTCATGGACAAGAAGGAGACGACCAACACCCAAACAGCACTACGGAATACAAACCAAAGAAAATGAAAGGTTTATCTAGCAAGCCAACAATAGAATGTGATTTATGCGGACATGCGGTGAGAAAGAAGTGTGACTTAGAAGCACATATGAACCGATATCATCTGAAAATCAAGCCGTATGTCTGTCATATATGTAACAAAGACTTCTGTGGTAAAGTTCGTCTGAAAGAACACATATCAACGCATACAACCGACAACAGTTGCTTCTGTTCCGTTTGTGGAGGGAAGTTTGCGAACCGTGTATGCCTTAAAATGCATATGAGAATGCATACCGGAGAAGCACCATACCCCTGTGATATTTGCGGCCAGAAATTTAGGTCTTCCAGCATGATGAAGACCCATAGACTAAAAAGGCATTTGGAGAAAACAGTATGTTGCCCTTTGTGTGACAGTATGTTCTTTATGGCCAGAGACATGAGGCATCACTTCAAGAAAACTCATTGGAAGTTCAAAGATGGAAGGCCATTCAATCCTAAAGATGTTGAGGAGTTACCCAAGGAGTGTTATTATCTATTTGAAGATGGTCGACTGCCGAAACTTAATCAAGAATGA
Protein Sequence: MEQAVSYHNHTDPKHIEWIKQKLKTVWTAPTFCGLCLEGHGNFCSVDMELVISHQTFSKCLRDILNYVFNDDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKIINNCISDLDSKVIDINTQLDDSVTYDTANVMIVLENDTELYKTIIDVKSMTEVVPTAKPIAMKDHVIPKPQPKVIQVAKPHKPIVIKKEIEKPKEVKQVKERKVPKADGTPNITLKEGHIVIKPLSSVRTSAPRYNTYECADCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLCIHYKTHSRARCKLCQVILPEEELMEHLRTLHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTKTKSQCVMCLKNFVDAEMKKHKCKFSCSECFVMPCIHFRYLNSYREQVLGHTNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCNQQFYTKLSLKTHIMQFHEDLFCPHCDFEFKDSRTLITHKKACKLVIRPFKCTHCVASFDLAEELTKHENLKHNEGVYSCPLCKSKFLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADELYPCKVCSKSFKSLRKLYIHNQRHYTNRIKCSGCNKRVAASFYPQHAVRCPYKRDTILSHICEVCGKSFHLESLLRFHQRVHMEPQPCPICNKVIKPTSLKRHMELVHGQEGDDQHPNSTTEYKPKKMKGLSSKPTIECDLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGKVRLKEHISTHTTDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDICGQKFRSSSMMKTHRLKRHLEKTVCCPLCDSMFFMARDMRHHFKKTHWKFKDGRPFNPKDVEELPKECYYLFEDGRLPKLNQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00039145;
90% Identity: iTF_01031398;
80% Identity: iTF_00852089;