Hbla006703.1
Basic Information
- Insect
- Hoplodrina blanda
- Gene Symbol
- -
- Assembly
- GCA_949316365.1
- Location
- OX438572.1:9655390-9658529[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0039 0.27 12.3 0.7 1 23 241 264 241 264 0.94 2 17 9.2e-06 0.00064 20.6 3.4 1 23 269 291 269 291 0.99 3 17 3.9 2.8e+02 2.9 0.2 2 23 295 316 294 316 0.88 4 17 0.047 3.3 8.9 1.0 1 23 321 344 321 344 0.94 5 17 0.0011 0.079 14.0 1.0 2 23 405 427 404 427 0.96 6 17 0.00015 0.01 16.8 1.2 1 23 433 456 433 456 0.96 7 17 0.0019 0.13 13.3 0.2 3 21 461 479 459 480 0.93 8 17 0.0065 0.45 11.6 0.2 1 23 488 511 488 511 0.95 9 17 0.039 2.7 9.2 0.4 2 23 552 573 551 573 0.94 10 17 0.0045 0.31 12.1 1.6 1 23 579 601 579 601 0.97 11 17 0.0056 0.39 11.8 2.7 1 23 637 659 637 659 0.96 12 17 0.06 4.2 8.6 0.2 2 23 664 685 663 685 0.93 13 17 0.0017 0.12 13.5 1.4 2 23 716 738 715 738 0.96 14 17 0.00045 0.032 15.3 2.8 1 23 744 766 744 766 0.98 15 17 0.00059 0.041 14.9 6.5 2 23 773 794 772 794 0.96 16 17 1.3e-05 0.00092 20.1 1.9 1 23 800 823 800 823 0.97 17 17 1.3 88 4.4 3.5 3 23 830 851 828 851 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAAGTTGAGTTTAACCTCAACAATGTACATTTAGAATGGGTAAAACAGAAACTGAAGACGGTGTGGACATCTCCCAAGTTCTGCGGACTGTGTTTGGAGCACTACGGTAACTTTTGTTCCGTTGACATGGAGCTCGTTATCAGCCATCAGTCTTTCTCTAAATGTTTACAAGATATTCTGAACTATGTGTTTGGTGAAGATATTGAAAACTCCATGTCAAGTCCGCACTTGTGTGACAGCTGTACGGAGAAGACAATACAATCTTATATCTTTATACACAACACAAAACAACTGAATAGGATCCTAAACAACTGCATCTCAGACCTGGATTCTAAAGTAGTCGATATCAGCGCACAACTTGATGATTCCGTTACATATGATAATGCTAACGTAATGATTGTACTGGAGAATGACACGGAACTTTACAAAACTATCATTGATGTTAAATCTGTGACCGAAATAGTGCCAACTGCTAAACCAATAGCAATGAAAGAACCTACAAAACCTAAACCACAGCAGCCAAAGGAATTTAAAGTTGAGAAACTTGTAAAACCAgtagttaatattaaaaaggaAATTGAAACACCGAAAGTGCGACAAAACAAAGTAAGGAAAGCTATAAAAGCCGATGGAACTCCAAATATTAGTTTGAAAGGAGGACACATTGTTATAAAACCTTTGAGCTCTTTAACCTCAGCGCCACGGTACAACACATACGAATGCGTCAACTGTACGGAAATATTCACCAATTATAGATCATTGAAGGAACATGAAAAAGCCAAACATAAAAAGTCTGTTTACCGCTGCAAATTATGTGATAAAACTTATAACACTCAGCAGTATTTGAACATACATTACAAGACGCATTGTAAGGACAGATGCAAGTTATGTCAACTTATATTGCCAGAAGAAGAGTTAATGGACCACTTGCGGACACAGCATCCTAATTTAGTGTACCCTTGCAAGTTCTGTGATCTAGTTTACTACACTCAAGAGTCTATGGACACACATTTCAAATTAAGCCATTTAGTGAATGATACAAAAGCTAAATCCCAATGCGTGATGTGTCTACGGAACTTTATCGATGCTGAGATGAAGAAACATAAGTGCAAGTTCTCATGCTCGGAATGTTTTGTCATGCCATGCATTCACTATAGGTATTTAAATTCCTATAGGGAGCAAGTCTTAAGccttgtaagtaaaataaaatgcttaGATTGTGATTATGTGACTCGACGTAAAGAACATTTAATTGGACATACAAATAGAGAGCATTTAGACCATCATCCGTTTACTTGTGCTGATTGTGGTCAACAGTTTTACACCAAGTTGAGTTTAAAGACCCACATCATGCAATTCCACGAAGATTTGTTTTGTCCGTACTGTGACTTTGAATTCAAAGATAGCAGAACTTTAGTAACGCATAGGAATGCCTGCAAACTTGTTATACGGTCATTCCAATGTACCTACTGCGTTGCATCATTCGATATCGCTGAAGAGCTAACCCGTCATGAGAACTTGCGCCATGGAGAAGAAGTGTATGCTTGCACCCTTTGCAAAAGCAGATACCTTACTGATATAGAACTACAAGAGCATCATGCAAGGGTTCATGGCGGCATACAGTGCAAGAAAAGGAGAAAACATATTGAATGCTCTTTATGCGacataatgtttaaaaatacaaaagaaatgCTTGAACATGAAAAATTCCACAACGAAGGTGAAGTTTTTCCTTGCAAAGTCTGCTCCAAACAATTCAAAACATTGATTAAATTGTACATTCACAATCAAAGGCACTACACCACGAGAATAAAATGTTCTGGATGTAACAAAAGGGTAGCTGCATCATTCTACCCCCAGCATGCGGTCAGGTGCCCGTATAAAAAAGATACAACTTTGAGCCATATCTGTGAAGTATGCGGCAAGTCTTTTCATCTGGAATCATTGCTACGTTTCCATCAAAGAATCCATTTAGAGCCTCAGCCATGCCCACGATGCCAAAAGGTTATCAAAcctacaagtttaaaaaaacatatggAGCTTGTTCATGCTCTTGTTACAGAACAAGACAAAGATGCGAACAGTACGGACCTGAAACCAAAGAGAAGAGGTGGTGGCGCAACAACTAAGCCATCTATTGAATGTGATTTATGTGGACATGCAGTGAGAAAAAAATGTGACTTAGAAGCTCATATGAACCGATATCATCTGAAAATCAAACCGTATATCTGTCATATATGTAATAAAGACTTCTGTGGGAAGGTTCGGCTGAAAGAACACATAGCGACCCATACTAGTGATAACAATTGCTTCTGTACCATTTGTTCGAAGAAATTTGCTAACCGTGTGTGTCTGAAAATGCACATGAGAATGCATACGGGAGAAGAACCATACTCCTGTGATATTTGCGGACAAACATTCAGATCTTCTAGTATGATGAAAACTCATAGATTAAAGAAACATTTAGAGAAAACTGTGTGTTGCCCTATGTGCGATAGTATGTTCTTTATGGCTCGAGACATGCGGCATCACTTTAAGAAAGCTCATTGGAAGTTCAAGGATGGAAGGCCATTCAATCCTAAAGATATTAAAGAGTTACCGGAAGAGTTTTATTACCTTTTTGAAGATGGTAGATTGCCAAAAGTTACAtag
- Protein Sequence
- MEEVEFNLNNVHLEWVKQKLKTVWTSPKFCGLCLEHYGNFCSVDMELVISHQSFSKCLQDILNYVFGEDIENSMSSPHLCDSCTEKTIQSYIFIHNTKQLNRILNNCISDLDSKVVDISAQLDDSVTYDNANVMIVLENDTELYKTIIDVKSVTEIVPTAKPIAMKEPTKPKPQQPKEFKVEKLVKPVVNIKKEIETPKVRQNKVRKAIKADGTPNISLKGGHIVIKPLSSLTSAPRYNTYECVNCTEIFTNYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHCKDRCKLCQLILPEEELMDHLRTQHPNLVYPCKFCDLVYYTQESMDTHFKLSHLVNDTKAKSQCVMCLRNFIDAEMKKHKCKFSCSECFVMPCIHYRYLNSYREQVLSLVSKIKCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLVTHRNACKLVIRSFQCTYCVASFDIAEELTRHENLRHGEEVYACTLCKSRYLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNTKEMLEHEKFHNEGEVFPCKVCSKQFKTLIKLYIHNQRHYTTRIKCSGCNKRVAASFYPQHAVRCPYKKDTTLSHICEVCGKSFHLESLLRFHQRIHLEPQPCPRCQKVIKPTSLKKHMELVHALVTEQDKDANSTDLKPKRRGGGATTKPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYICHICNKDFCGKVRLKEHIATHTSDNNCFCTICSKKFANRVCLKMHMRMHTGEEPYSCDICGQTFRSSSMMKTHRLKKHLEKTVCCPMCDSMFFMARDMRHHFKKAHWKFKDGRPFNPKDIKELPEEFYYLFEDGRLPKVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00809455;
- 80% Identity
- -