Alep016297.1
Basic Information
- Insect
- Athetis lepigone
- Gene Symbol
- -
- Assembly
- GCA_033675125.1
- Location
- CM066228.1:2133391-2136937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0034 0.36 12.5 0.7 1 23 238 261 238 261 0.94 2 18 0.00014 0.015 16.9 2.2 3 23 268 288 266 288 0.98 3 18 4.5 4.6e+02 2.7 0.2 2 23 292 313 292 313 0.86 4 18 0.024 2.5 9.8 0.8 1 23 318 341 318 341 0.96 5 18 0.0018 0.19 13.4 0.6 2 23 402 424 401 424 0.95 6 18 0.00015 0.016 16.8 1.2 1 23 430 453 430 453 0.96 7 18 0.0016 0.16 13.6 0.2 3 21 458 476 456 477 0.93 8 18 0.0059 0.62 11.8 0.1 1 23 485 508 485 508 0.95 9 18 0.015 1.6 10.5 0.3 2 23 549 570 548 570 0.94 10 18 0.0043 0.45 12.2 1.4 1 23 576 598 576 598 0.97 11 18 4.3 4.5e+02 2.8 0.3 2 13 604 615 603 617 0.84 12 18 0.052 5.4 8.8 2.6 1 23 634 656 634 656 0.95 13 18 0.0056 0.58 11.9 0.1 2 23 661 682 660 682 0.95 14 18 0.0024 0.25 13.0 1.8 2 23 712 734 711 734 0.96 15 18 4.9e-05 0.0051 18.3 0.8 1 23 740 762 740 762 0.98 16 18 0.00091 0.094 14.3 5.8 2 23 769 790 768 790 0.95 17 18 0.00012 0.013 17.1 1.6 1 23 796 819 796 819 0.96 18 18 1.8 1.9e+02 4.0 3.4 3 23 826 847 824 847 0.95
Sequence Information
- Coding Sequence
- ATGGAACAAAACTCAAATGACACGAATCCAGCACATTTAGAATGGATAAAACAGAAATTGAAGACGGTATGGACATCGCCCAAGTTTTGCGGACTATGTTTAGAGAACAACGGTAACTTCAGTTCCGTTGATATGGAGCTCGTTATCAGCCATCAGACATTCTCTAAATGTCTGCAGGATATCCTGAACTATGTGTTCGGTGAAGATATTGAAAACTTCATGTCAAGCCCGTACTTGTGTGACAGTTGTACAGAGAAGGCGATACAATCCTACCTCTTCATACATAACACGAAACAACTGAATAAGATCCTACACAACTGTATTTCTGACCTCAACTCTAAAATCCTAGACATCAACACACAGTTGGACACATCCTCACCATGTGACATAGCCAATGTAGCCATTGTACTTGAAAATGATACTGAACTTTTCAAAACTCTCATAGATGTCAAATCTGGGACCGAAGTGGTGCCAACTTCAAAACCCATCGCCATGAAAGAACCTACAATACCCAAACCCGAGCCAAAAGTAGAAAAAGAAGTTGAAAAACCTGTGGTCATAAAAAAAGAAGAGACACAAAAGGAATCTCCACAAACCAAAGCAAGGAAGGTTATAAAAGCTGATGGAACCCCCAATATTAGTTTGAAAGAAGGTCACATTGTTATAAAACCGCTGAGCTCTGTAAGAACCTCGGCTCCTCGCTACAACACCTATCAATGCACTGACTGTCCCGATATATTCACAAATTACAGATCTTTGAAAGAGCATGAAAAAGCCAAGCATAAAAAGTCTGTTTATGGCTGCAAGTTTTGCAACAAAACTTATAATACGCAGCAGTATTTGAACATACATTACAAGACTCATTGTAGAGCTAGATGTAAGTTGTGTCAAGTTATACTCCCCGAAGATGAGTTAATGGACCATTTGCGGACACTCCACGCTAACTTAGTGTATCCTTGTAAGTTCTGTGATCTAGTCTACTATACACAGGAGTCAATGGACACACATTTCAAAATAAGCCATCTAGTAAATGATACCAAAGCTAAATCTCAATGTGTGATGTGTCTACGTAACTTTAACGACATTGAAATGAAGAAACATAAGTGTAAGTTCTCATGCTCTGAATGTTTTGTTATGCCATGCGTTCACTATAAGTATTTGAACTCTTATAGAGAGCAAGTTTTAAGCCatgtgaataaaattaaatgcttAGATTGTGACTATGTGACTCGGCGTAAGGAACATTTGATTGGACATGCAAACAGAGAGCATTTAGACCATCATCCGTTTACTTGCGCGGATTGTGGCCAACAGTTTTATACTAAGTTGAGCTTAAAAACGCACATCATGCAATTCCATGAAGATCTGTTTTGTCCGTACTGTGACTTTGAGTTCAAAGATAGCAGAACTTTAGCAACACATAGGAATGCTTGCAAGCTTGTTATACGGTCATTCCAATGTTCTCAATGTGTGGCGTCATTCGACGTTGCTGAAGAATTAACTAGACATGAGAATTTGCAGCATAACGATGGAGTACATGCGTGCAACCTATGTAAAAGCAGATTCCTCACAGATTTAGAATTACAAGAACATCATGCGAGAATTCACGGAGGCATACAATGCAAGAAAAGAAGGAAACATATTGAATGCTCTATATGCGacataatgtttaaaaatattaaagaaatgcTTCAACATGAAAAGTTTCACAATGAAGATGATGTTTACCCATGCAAAGTCTGTTCGAAACAGTTCAAGTCATTGATAAAATTGTACATTCACAATCAAAGGCACTATACCACGAGAATTAAATGTTCCGGATGTAACAAACGGGTGGCTACATCATTCTACCCTCAGCATGCTGTGAGGTGTccgtataaaagagaaatagCTTTGAGTCATATCTGTGAAGTATGCGGCAAGTCCTACCATCTCGAATCATTGTTACGTTTCCATCAGAAAATCCACTTAGAACCTCAACCATGTCCTAAATGCAACAAGGTTATCAAGCCTGCAAGTCTAAAAAAGCATATGGAAATTATCCATGGTCTGGGTTCAgaacaagaaaagaaaatttcCACTTCAGAGCCACCAAAACCTAGGAAAAAAGGTGGAGCAAGCAAGGCTTCGATGGAGTGTGATTTATGCGGACATGCAGTAAGAAAGAAATGCGACTTAGAAGCTCACATGAACCGATACCACTTGAAAATCAAGCCATACATCTGTCCTATATGTAATAAAGACTTTTGTGGTAAAGTTCGGTTGAAAGAACATATGGCAACACATACAAATGATAACAGTTGCTTCTGTACAATTTGTGGGAAGAAATTTGCTAACAGAGTGTGTTTAAAAATGCATACTAGGTTGCATACCGGAGAAGCACCTTATGCTTGTGATCTTTGCGGCCAGAAATTCAGATCTTCGAGTTTGATGAAAACTCATAGACTAAAGAAACATTTAGAGAAGACTGTCTGCTGTCCTCTATGCGATAGCATGTTCTTTATGGCGCGAGATATGAGACACCATTTCAAAAAAGCTCATTGGAAGTTCAAAGATGGAAGGCCTTTCAACCCGAAAGATGTTAAAGAGTTGCCAGAAGAATTGTACTATCTTTTTGAAGATGGCAGGTTACCGAAACTTACACAAGATTAG
- Protein Sequence
- MEQNSNDTNPAHLEWIKQKLKTVWTSPKFCGLCLENNGNFSSVDMELVISHQTFSKCLQDILNYVFGEDIENFMSSPYLCDSCTEKAIQSYLFIHNTKQLNKILHNCISDLNSKILDINTQLDTSSPCDIANVAIVLENDTELFKTLIDVKSGTEVVPTSKPIAMKEPTIPKPEPKVEKEVEKPVVIKKEETQKESPQTKARKVIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYQCTDCPDIFTNYRSLKEHEKAKHKKSVYGCKFCNKTYNTQQYLNIHYKTHCRARCKLCQVILPEDELMDHLRTLHANLVYPCKFCDLVYYTQESMDTHFKISHLVNDTKAKSQCVMCLRNFNDIEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLATHRNACKLVIRSFQCSQCVASFDVAEELTRHENLQHNDGVHACNLCKSRFLTDLELQEHHARIHGGIQCKKRRKHIECSICDIMFKNIKEMLQHEKFHNEDDVYPCKVCSKQFKSLIKLYIHNQRHYTTRIKCSGCNKRVATSFYPQHAVRCPYKREIALSHICEVCGKSYHLESLLRFHQKIHLEPQPCPKCNKVIKPASLKKHMEIIHGLGSEQEKKISTSEPPKPRKKGGASKASMECDLCGHAVRKKCDLEAHMNRYHLKIKPYICPICNKDFCGKVRLKEHMATHTNDNSCFCTICGKKFANRVCLKMHTRLHTGEAPYACDLCGQKFRSSSLMKTHRLKKHLEKTVCCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFNPKDVKELPEELYYLFEDGRLPKLTQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- -
- 80% Identity
- -