Npro002738.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999918.1:11231688-11237156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.017 1.6 10.0 0.3 1 23 242 265 242 265 0.94 2 18 7.7e-06 0.00071 20.6 3.4 1 23 270 292 270 292 0.99 3 18 2.3 2.1e+02 3.4 0.2 2 23 296 317 296 317 0.91 4 18 0.0029 0.27 12.5 0.8 1 23 322 345 322 345 0.96 5 18 0.0011 0.1 13.8 1.1 2 23 406 428 405 428 0.96 6 18 0.0014 0.13 13.5 1.8 1 23 434 457 434 457 0.96 7 18 0.00084 0.078 14.2 0.3 3 21 462 480 460 481 0.94 8 18 0.0025 0.23 12.7 0.7 1 23 489 512 489 512 0.95 9 18 2 1.8e+02 3.6 0.2 1 23 517 540 517 540 0.89 10 18 0.037 3.5 9.0 0.3 2 23 553 574 552 574 0.94 11 18 0.0015 0.13 13.4 2.6 1 23 580 602 580 602 0.97 12 18 0.0053 0.49 11.7 2.3 1 23 638 660 638 660 0.96 13 18 0.013 1.2 10.4 0.2 2 23 665 686 664 686 0.93 14 18 0.001 0.097 13.9 2.2 2 23 719 741 718 741 0.96 15 18 0.00078 0.072 14.3 3.6 1 23 747 769 747 769 0.98 16 18 0.0018 0.17 13.1 4.1 2 23 776 797 775 797 0.96 17 18 0.0001 0.0093 17.1 1.6 1 23 803 826 803 826 0.96 18 18 0.85 78 4.7 5.6 3 23 833 854 831 854 0.95
Sequence Information
- Coding Sequence
- ATGGATATCGAATCAAATCACACTGATCCAAACCACTTGGATTGGATAAAACAGAAACTCAAGACAGTGTGGACGGCTCCAATGTTCTGCGGACTATGTTTGGAGAACCGCGGCAACTTCTGTTCTGTTGACATGGAACTGGTCATCAGCAGTCAGACATTCTCGAAGTGTCTGCAGGATATACTGAACTATGTGTTCAATGAAGATATTGAAAATTTCATGTCAAGTCCTCACTTGTGCGACAGTTGCACCGAAAAGACAATACAATCTTACCTCTTCATACACAACACTAAGCAACTGAACAAGATCTTGAACAACTGCATCTCAGACATAGACTCCAAAGTAATTGACATCAACGCACAGCTCGATGACTCCATGACCTACGACACTGCCAATGTTATGATCGTCCTAGAAAATGACACTGAATTATACAAAACTATCATTGATGTTAAATCAATGACTGAAATAGTGCCTACTTCCAAACCTATAGCAATGAAAGAACCTGTCAACCCTAAACCGCCAGAACCAAAACTAATTCAAGTTGCCAAGCCGCATAAACCAATAGTTATAAAAAGGGAAACAGAAAGGCCTAAGGAAGTGAAGCAAATCAAAGAAAGGAAGGTTTTTAAAGCTGATGGAACTCCTAATATTAGCTTGAAAGAAGGCCATATTGTGATCAAGCCTTTAAGCTCAGTGCGTACATCAGCTCCTCGTTACAATACTTATGAATGTGTCGACTGTCCTGATATTTTCACCACTTATAGATCTTTGAAGGAACATGAAAAGGCAAAGCATAAAAAGTCAGTTTACCGTTGCAAATTATGTGACAAGACTTACAACACTCAGCAATATTTGAACATACATTATAAGACTCATTCGAGGGCTAGATGCAAGTTGTGTCAAACTATACTCCCAGAAGGGGATCTAATGGAACATTTGAGGACACTCCACCCTAACTTAGTATACCCTTGCAAGTTTTGTGACCTGGTTTACTACACCCAAGAGTCTCTTGACACACATTTCAAAATAAGCCATCTAGTCAATGACACAAGAGCTAAATCTCAATGTGTAATGTGTCTAAAGAACTTTATGGATGCGGAAATGAAGAAGCACAAGTGCAAGTTCTCTTGCTCAGAATGTTTTGTCATGCCCTGCGTACATTTTAGATACTTAAATTCCTATAGAGAGCAGGTCTTAAGCCATGTGAATAAAATAAAATGCATGGATTGTGACTATGTCACTCGTCGCAAAGAACATCTTATAGGTCATACTAACAGGGAGCATTTGGACCATCATCCCTTCACTTGTGCTGACTGTAGCCAACAGTTTTACACTAAGTTGAGTTTGAAAACCCACATCATGCAATTCCATCAAGATCTATTTTGTCCTTACTGTGATTTTGAATTTAAGGATAACAGAACTTTAATCACGCATAGGAAAGCCTGCAAACTGGTTATCAGGCCATTCCAATGTACCCACTGTGTTGCCTCATTTGATGTTGCCGAAGAGTTGACCAAACATGAGAACTTGAAACATAATGAAGGAGTTTACGCTTGCCCGCTATGTAAAAGCAGATTCCTTGCTGACATAGAACTCCTTGAGCACCATGCGAGGGTACACGGGGGCATACAATGCAAGAAAAGGAGAAAACATATTGAATGCTCTTTATGCGACATTATGTTTAAAAACATAAAAGAAATGCTTCAACATGAAAAATTCCACAATGCAGATGAGCTGTACCCGTGCAAAGTCTGCTCTAAAAAGTTCAAATCCCTGCGAAAATTGTACATTCACAATCAAAGGCACTATACTAACAGAATAAAATGTTCCAGCTGTAATAAAAGGATAGCGGCATCGTTCTACCCGCAACATGCAGTGAGGTGCCCGTACAAACGTGAAGCAAATTTAAGCCACATCTGTGAAGTATGCGGCAAGTCGTTCCATCTGGAATCTTTACTACGTTTCCATCTAAGAATCCATTTAGAGCCAACACAATGTCCTCGATGCAACAAAGTTGTCAAACCTGCAAGTCTAAAAAGGCATTTGGAACTAGTCCATGGAGTTGGGACAGACCACGACGATATAGACCACCTTGCCACTGGTGATACGGTACCAAAGAAACGGAATAAAGGCGTATCAGCCAGACCGCTGATTGAATGTGACCTATGTGGACATACAGTGAGGAAGAAATGTGATTTAGAAGCTCATATGAACCGATATCATCTGAAAATCAAGCCTTACGTCTGCCATATATGCAGTAAAGACTTCTGTGGTAAAGTTAGACTGAAAGAACACATTTCTACGCACACAAATGACAACAGTTGCTTTTGTTCCGTTTGTGGAGGAAAATTTGCCAACCGTGTATGTCTGAAAATGCACATGAGAATGCATACGGGCGAAGCACCTTACGCTTGTGACCTTTGTGGTCAAAGATTCAGATCTTCCAGCATGATGAAGACTCATAGACTAAAGAAACATTTGGAGAAAACTGTTTGCTGTCCACTCTGTGATTGTATGTTTTATATGGCCAGAGATATGAGGCATCACTTCAAGAAAGCTCATTGGAAATTCAAAGATGGAAGGCCGTTCAATCCTAGGGATGTTGAAGAGTTGCCTAAGGACTTGTATTATCTTTTTGAAGATGGTAGACTGCCGAAACTTAATCTAGATTAG
- Protein Sequence
- MDIESNHTDPNHLDWIKQKLKTVWTAPMFCGLCLENRGNFCSVDMELVISSQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDIDSKVIDINAQLDDSMTYDTANVMIVLENDTELYKTIIDVKSMTEIVPTSKPIAMKEPVNPKPPEPKLIQVAKPHKPIVIKRETERPKEVKQIKERKVFKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECVDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHSRARCKLCQTILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCVHFRYLNSYREQVLSHVNKIKCMDCDYVTRRKEHLIGHTNREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHQDLFCPYCDFEFKDNRTLITHRKACKLVIRPFQCTHCVASFDVAEELTKHENLKHNEGVYACPLCKSRFLADIELLEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKFHNADELYPCKVCSKKFKSLRKLYIHNQRHYTNRIKCSSCNKRIAASFYPQHAVRCPYKREANLSHICEVCGKSFHLESLLRFHLRIHLEPTQCPRCNKVVKPASLKRHLELVHGVGTDHDDIDHLATGDTVPKKRNKGVSARPLIECDLCGHTVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYACDLCGQRFRSSSMMKTHRLKKHLEKTVCCPLCDCMFYMARDMRHHFKKAHWKFKDGRPFNPRDVEELPKDLYYLFEDGRLPKLNLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_01085703;
- 80% Identity
- -