Gfla024748.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770150.1:1522042-1525057[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.16 5.1e+03 -1.5 0.0 26 43 462 479 456 485 0.86 2 6 0.62 1.9e+04 -3.4 0.0 27 48 492 513 489 514 0.84 3 6 2.9e-05 0.9 10.5 0.0 24 50 664 689 659 692 0.89 4 6 0.00014 4.4 8.3 0.1 11 49 697 736 693 742 0.84 5 6 0.08 2.5e+03 -0.5 0.0 22 51 794 823 791 824 0.83 6 6 0.00016 4.9 8.1 0.0 18 49 818 849 812 854 0.86
Sequence Information
- Coding Sequence
- ATGGAGGAAGCAGAGTCAAATCAAACCACTCCAGAGCAATTAGAATGGATAAAACAGAAGCTCAAGACAGTGTGGACATCTCCCACGTTCTGCGGACTATGTTTGGAGAGCCGTGGCAATTTCTGTTCTGTTGACATGGAATTTGTTATCAGCCATCAGACATTCTCTAAATGTCTGCAGGACATACTGAACTATGTATTTAATGAAGACATTGAAAACTTCATGTCAAGTCCACACTTATGCGACAGTTGCACAGAGAAGACAATACAATCTTACCTCTTTATACACAACACAAAACAACTAAACAAAATCCTTAACAACTGCATCTCAGACCTTGACTCCAAAGTAATTGACATCAACGCACAACTTGATGAATCCATGACATATGATACTGCCAACGTAATGATTGTCCTGGAAAACGACACAGGACTATACAAAACAATCATTGATGTTAAGTCGATGACTGAAATTGTGCCAACTGCTAAACCCATTGCAATGAAAGAACCAGTTAATCCAAAGCTACCACAGCCAAAAGTAATTCAAGTTGCCAAACCTCTTAAACCCATAGTAATAAAGAAGGAAATTGAAAAACCTACAGAAGTGAGGCCAGTCAAAGTAAGGAAAATTATAAAAGCTGATGGAACTCCAAATATAAGCCTGAAGGAAGGTCACATTGTGATAAAGCCTTTAAGCTCTGTACGAACCTCAGCTCCACGATACAACACTTATGGATGCACTGATTGTCCAGATATTTTCACTACTTACAGATCCTTGAAGGAACATGAAAAGGCCAAGCATAAAAAGTATGTTTACCGCTGCAAGTTATGCGACAAGACTTATAACACTCAGCAATATTTGAACATTCATTACAAGACACATAGCCGGGCTAGGTGCAAGTTATGTCAAGTTATACTGCCAGAAGGGGATTTAATGGAACATTTGAGGACACTTCATCCTAATTTAGTGTACCCTTGCAAGTTTTGTGACTTAGTCTACTACACCCAAGAGTCTTTGGATACACATTTCAAAATAAGCCATTTAGTCAACGACACAAGAGCTAAATCTCAATGCGTTATGTGTCTAAAGAACTTTATGGATGCCGAGATGAAGAAGCATAAATGCAAGTTCTCATGCTCAGAATGTTTTGTCATGCCATGTGTTCActataagtatttaaattctTATAGAGAGCAGGTTTTGAGccatgtaaacaaaataaaatgcttgGATTGCGACTATGTGACTCGACGCAAAGAACATCTAATAGGCCACGCTAACAGAGAGCATTTGGACCATCATCCGTTTACTTGTGCTGATTGTAGTCAACAGTTTTACACTAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATTTGTTTTGTCCGTACTGCGACTTTGAATTTAAAGATAGCAGAACTTTGATAACACATAGGAAAGCCTGCAAGCTTGTTATACGGTCATTCCAGTGTACCCTCTGTGTTGCCTCCTTCGACGTCCTGGAAGAGTTGACCAATCATGAGAACTTGAAACATAATGACGGAGTGTATGCTTGCAGTCTTTGTAAAAGCAAATTTCTTATGGAAATAGAACTGGAAGAGCACCATGCGAGAATCCACGGGGGAATACAATGCAAGAAAAGGAGAAAACACATTGAATGCTCTTTATGCaacataatgtttaaaaatataaaagaaatgcTTCAACATGAAAAGTTTCATGGAGAAAATGAAGTTTATCCATGCAAAGTGTGCTCGAAGAAATTTAAATCATTAAGTAAATTATACATTCATAATCAAAGGCATTATACCAACAGAATAAAATGTTCTGGATGTAACAAAAGGGTAGCTGCATCATTCTTCCCCCAGCATGCGGTGAGGTGCCCGTATAAAAGAGATACAACTTTGAGCCATATTTGTGAAGTATGCGGCAAGTCCTTCCACCTGGAATCCCTGCTACGCTTCCATCAAAGAATCCACATGGACCCAAAACCATGTCCACAATGCAATAAGGTTATGAAACCTTCAAGTCTAAAAAGACATATGGAGCTAGTCCATGGAGCTGGCACGGAACAAGAGTTAGAAGGAACAGAACCGAGGAAACAAAAAGTTGGATCAAGCAAGCCATCGATTAAATGTAACTTATGTGGACATGTAGTGAGAAAGAAATGTGACTTAGACGCTCATTTGAACCGATATCATCTGAAAATCAAGCCCTACATCTGTCATATATGCAGTAAAGACTTCTGCGGTAGAGTTCGACTGAAAGAACATATTTCAACGCACACAAATGACAACAGTTGCTTTTGTTCCGTTTGTGGAGGGAAATTTGCAAACCGTGTGTGTCTTAAAATGCATATGAGAATGCATACTGGGGAAGCACCTTACCCCTGCGATCTATGCGGACAAAGATTCAGGTCGTCTAGTATGATGAAGAGTCATAGAATTAAGAAACATATGGAGAAAACAATTAGTTGTCCGTTGTGTGATAGTATGTTCTTCATGGCCCGGGATATGAGACATCACTTCAAGAAAGCTCATTGGAAATTCAAGGATGGTAGGCCGTTCGATCCTAAGGATGTTGTAGAGTTACCCGAGGAGTCATATTATCTTTTTGAAGATGGTAGATTGCCTAAACTTAATCAAGATTAG
- Protein Sequence
- MEEAESNQTTPEQLEWIKQKLKTVWTSPTFCGLCLESRGNFCSVDMEFVISHQTFSKCLQDILNYVFNEDIENFMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDLDSKVIDINAQLDESMTYDTANVMIVLENDTGLYKTIIDVKSMTEIVPTAKPIAMKEPVNPKLPQPKVIQVAKPLKPIVIKKEIEKPTEVRPVKVRKIIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYGCTDCPDIFTTYRSLKEHEKAKHKKYVYRCKLCDKTYNTQQYLNIHYKTHSRARCKLCQVILPEGDLMEHLRTLHPNLVYPCKFCDLVYYTQESLDTHFKISHLVNDTRAKSQCVMCLKNFMDAEMKKHKCKFSCSECFVMPCVHYKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLITHRKACKLVIRSFQCTLCVASFDVLEELTNHENLKHNDGVYACSLCKSKFLMEIELEEHHARIHGGIQCKKRRKHIECSLCNIMFKNIKEMLQHEKFHGENEVYPCKVCSKKFKSLSKLYIHNQRHYTNRIKCSGCNKRVAASFFPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRIHMDPKPCPQCNKVMKPSSLKRHMELVHGAGTEQELEGTEPRKQKVGSSKPSIKCNLCGHVVRKKCDLDAHLNRYHLKIKPYICHICSKDFCGRVRLKEHISTHTNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYPCDLCGQRFRSSSMMKSHRIKKHMEKTISCPLCDSMFFMARDMRHHFKKAHWKFKDGRPFDPKDVVELPEESYYLFEDGRLPKLNQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00121735;
- 80% Identity
- iTF_00758579;