Aput016438.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000858.1:428676-431661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0045 0.3 11.9 0.5 1 23 245 268 245 268 0.94 2 17 7.8e-06 0.00052 20.6 3.4 1 23 273 295 273 295 0.99 3 17 3.7 2.4e+02 2.7 0.2 2 23 299 320 299 320 0.88 4 17 0.0032 0.21 12.4 1.1 1 23 325 348 325 348 0.96 5 17 0.0015 0.1 13.4 0.6 2 23 409 431 408 431 0.95 6 17 0.0014 0.094 13.5 1.8 1 23 437 460 437 460 0.96 7 17 0.062 4.1 8.3 0.2 2 21 464 483 463 484 0.89 8 17 0.032 2.2 9.2 0.1 1 23 492 515 492 515 0.95 9 17 0.014 0.93 10.4 0.3 2 23 556 577 555 577 0.94 10 17 0.0017 0.11 13.2 2.3 1 23 583 605 583 605 0.97 11 17 0.033 2.2 9.2 2.7 1 23 641 663 641 663 0.96 12 17 0.0068 0.45 11.3 0.1 2 23 668 689 667 689 0.94 13 17 0.0012 0.082 13.7 1.8 2 23 721 743 720 743 0.96 14 17 0.00068 0.045 14.5 3.7 1 23 749 771 749 771 0.98 15 17 0.0019 0.12 13.1 4.1 2 23 778 799 777 799 0.96 16 17 3e-05 0.002 18.7 1.4 1 23 805 828 805 828 0.96 17 17 1.5 1e+02 4.0 3.4 3 23 835 856 833 856 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGGCAGAAGAAAAACAAATAGATCCAAAGCACTTGTCTTGGATAAAAGAGAAACTCAGTACGATGTGGACGGCTCCAAAGTTCTGCGGACTATGTCTGGAGAAATGTGGCAACTTCTGTTCTGTTGAAATGGAACTGGTTATCAGCCATCAGACATTTTCAAAATGTCTGCAGGATATATTGAACTATGTGTTTAATGAAGATATTGAAAACTTCATGGCAAGTCCACACTTATGTGACAGTTGTACAGAAAAGACAATACAATCTTACCTTTTCATTCACAACACAAAACAACTGCACAAAATATTGAACAACTGCATATCAGACATAGACTCCAAAGTGATAGACATCAATGCACAGCTTGATGACAGGAGCATCATGATGGATGATGCAGCCAATGTCATGATTGTCCTCGAAAATGATACAGAACTTTACAAAACTATCATTGACGTTAAATCCATGACAGAAATTGTACCAACTTCTAAACCTATAGCAATGAAGGAACCTGTTAATCCAAAACCATCAGAACATAAACTAATCCAAGTTGCTAAACCAGCTAAACCAATAATTATAAAAAGAGAATTAGAGGAAAATAAAGAAGTGAAGCAAAACAAAGAGAGAAAGGCTATAAAAGCTGATGGAACTCCTAATATTAGTTTGAAAGAAGGCCATATTGTGATCAAGCCTTTGAGTTCTGTTCGTACATCAGCCCCTCGGTATAATACATATGAATGCACTGATTGTCCTGATATATTCACCACATACAGATCCTTAAAGGAACATGAAAAAGCCAAGCATAAGAAGTCTGTATACCGCTGTAAATTATGTGATAAAACATATAACACCCAGCAATATTTGAATATACATTATAAGACGCACTCTAGGGCGAGATGCAAACTGTGTCAAATTATACTCCCGGAAGGAGATTTAATGGAGCATTTGAGAACACAACATCCTAATTTAGTCTACCCTTGCAAATTTTGCGACCTAGTTTACTACACTAAAGAGTCTTTGGACACGCATTTCAAAATAACCCATTTAGTCAATGACACAAGGGCTAAATCTCAATGCGTTATGTGTCTAAAGAATTTTATGGATGATGAACTCAAGAAGCATAAATGCAAGTTCTCATGCTCGGAGTGTTTTGTAATGCCTTGCATACACTTCAGATTTTTAAATTCTTACAGAGAGCAAGTCTTAAGTCATGTTAACAAAATAAAGTGCTTGGATTGTGACTATGTCACTCGGCGTAAAGAACACCTTATAGGTCACGCTAATAGAGAGCATTTGGACCATCATCCCTTTACTTGTGCCGATTGTAGCCAACAGTTCTATACTAAGTTAAGTTTAAAAACACATATTATGCAATTCCATGAAGATCTATATTGTCCATATTGTGATTTTGAATTTAAAGACAACAGGATTTTAGTTACACATAGGAAAGCTTGCAAACTTGTAATTCGGCCTTTCCAATGTTCCTTATGTGTTGCTTCATTCGATATTGCTGAAGAGTTGACGAAACATGAGAACTTGAGACATAACGAAGGAGTTAATGCTTGCTCACTATGTAAAAGCAGGTTCCTAACTGAAATAGAACTGCAAGAGCATCATGCGAGAGTCCACGGAGGCATACAATGCAAGAAAAGAAGAAAGCATATAGAATGTTCACTTTGTGACATAATGTTTAAAACCCTAAAAGACATGCTTCAGCATGAACAATTCCACAGTGCGGGTGAGTTGTTCCCGTGCAAAGTCTGCAAAAAGGAATTCAAATCTTTGAGAAAATTGTACATTCATAATCAAAGACATTATACAAACAGGGTAAAATGTTCTGGCTGCAACAAAAAAGTAGCTGCATCATTCTACCCACAACATGCTGTGAGGTGTCCCTATAAAAGGGATTCAAATTTAAACCACATTTGTGAAGTCTGCAACAAGGCATTCCACCTAGAGTCGTTACTACGTTTCCACCAAAGAATCCACTTGGATCCAACGCCATGTCCTCGATGCAACAAGGCTGTCAAACCTACAAGTCTAAAAAGGCATATGGAAATAGTCCATGGAGTTGGTACAGAACATGATGATGAAGACCAAGTCACAGGGGAAATTAAACCAAGAAAACAGAATAGAGGTGTAACAACCAAGCCGACAATTGAATGTAATCTGTGTGGACATGCAGTGAGGAAGAAATGTGACTTAGAAGCTCATATGAATCGCTACCATTTGAAAATTAAGCCTTATGTCTGTCATATATGCAACAAAGACTTCTGTGGTAGAGTTAGATTGAAGGAACATATAACAACCCACAGCAATGATAACAGTTGCTTTTGTTCTGTATGTGGTGGAAAATTTGCAAACCGTGTATGTTTGAAAATGCATATGAGAATGCATACAGGCGAAGCACCATATGCTTGCGACATTTGCGGACAAAGATTCAGATCTTCTAGCATGATGAAGACCCATAGACTAAAGAAACATTTGGAGAAAACTGTTTGCTGTCCACTTTGTGATAGTATGTTCTTTATGGCCAGGGATATGAGGCACCACTTCAAGAAAGCTCACTGGAAATCCAAAGATGGAAGGCCTTTCAATCCTAGAGACGTTGAAGAATTACCGAAAGAGTTATATTATCTTTTTGAGGATGGTAGACTGCCAAAACTTCATGAATAG
- Protein Sequence
- MEEAEEKQIDPKHLSWIKEKLSTMWTAPKFCGLCLEKCGNFCSVEMELVISHQTFSKCLQDILNYVFNEDIENFMASPHLCDSCTEKTIQSYLFIHNTKQLHKILNNCISDIDSKVIDINAQLDDRSIMMDDAANVMIVLENDTELYKTIIDVKSMTEIVPTSKPIAMKEPVNPKPSEHKLIQVAKPAKPIIIKRELEENKEVKQNKERKAIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYECTDCPDIFTTYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHSRARCKLCQIILPEGDLMEHLRTQHPNLVYPCKFCDLVYYTKESLDTHFKITHLVNDTRAKSQCVMCLKNFMDDELKKHKCKFSCSECFVMPCIHFRFLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCSQQFYTKLSLKTHIMQFHEDLYCPYCDFEFKDNRILVTHRKACKLVIRPFQCSLCVASFDIAEELTKHENLRHNEGVNACSLCKSRFLTEIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKTLKDMLQHEQFHSAGELFPCKVCKKEFKSLRKLYIHNQRHYTNRVKCSGCNKKVAASFYPQHAVRCPYKRDSNLNHICEVCNKAFHLESLLRFHQRIHLDPTPCPRCNKAVKPTSLKRHMEIVHGVGTEHDDEDQVTGEIKPRKQNRGVTTKPTIECNLCGHAVRKKCDLEAHMNRYHLKIKPYVCHICNKDFCGRVRLKEHITTHSNDNSCFCSVCGGKFANRVCLKMHMRMHTGEAPYACDICGQRFRSSSMMKTHRLKKHLEKTVCCPLCDSMFFMARDMRHHFKKAHWKSKDGRPFNPRDVEELPKELYYLFEDGRLPKLHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00043835;
- 80% Identity
- -