Ckad008250.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381698.1:9103874-9106820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0019 0.11 13.0 0.3 1 23 243 266 243 266 0.94 2 19 3e-05 0.0018 18.7 2.3 1 23 271 293 271 293 0.96 3 19 5.3 3.1e+02 2.2 0.2 3 23 298 318 297 318 0.84 4 19 0.02 1.2 9.8 0.8 1 23 323 346 323 346 0.96 5 19 0.0015 0.087 13.4 0.6 2 23 407 429 406 429 0.95 6 19 0.00012 0.0071 16.8 1.2 1 23 435 458 435 458 0.96 7 19 0.0016 0.092 13.3 0.2 3 21 463 481 461 482 0.93 8 19 0.0016 0.095 13.2 0.5 1 23 490 513 490 513 0.95 9 19 6.4 3.7e+02 1.9 0.7 1 23 518 541 518 541 0.85 10 19 0.012 0.72 10.5 0.3 2 23 554 575 553 575 0.94 11 19 0.0036 0.21 12.2 1.4 1 23 581 603 581 603 0.97 12 19 10 5.8e+02 1.3 0.1 2 9 609 616 608 619 0.88 13 19 0.0047 0.27 11.8 2.7 1 23 639 661 639 661 0.96 14 19 0.017 1 10.0 0.3 2 23 666 686 665 686 0.95 15 19 0.0014 0.081 13.5 1.4 2 23 719 741 718 741 0.96 16 19 0.00033 0.019 15.4 4.2 1 23 747 769 747 769 0.98 17 19 3.8e-05 0.0022 18.4 5.5 2 23 776 797 775 797 0.96 18 19 9.8e-05 0.0057 17.1 2.4 1 23 803 826 803 826 0.97 19 19 1.1 61 4.4 3.5 3 23 833 854 831 854 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGATGAGTTAAATCGCCCCAATCCAAAACATTTAGAATGGATAAAACAGAAATTGAAGACGGTGTGGACATCTCCCAAGTTCTGCGGACTATGTTTGGAAAGCAACGGCAACTTTTGTTCCGTTGATATGGAGCTTGTTATCAGCCATCAGACATTCTCTAAATGCTTGCAGGATATACTGAACTACGTGTTTGGTGAGGATATTGAAAACTCCATGTCAAGTCCGCACTTGTGTGACAGTTGTACGGAGAAGACAATTCAATCCTACCTCTTCATACACAACACTAAACAATTAAATAAGATCCTAAACAACTGCATCTCGGACCTTGATTCCAAAATAATTGACATCAGCGCACAACTTGATGAATCTATAACATATGATACTGCCAACGTAATGATCGTCTTAGAGAATGATACGGAATTTTACAAGACTATCATTGACGTCAAGACTGTTACCGAAATAGTGCCAACAGCTAAACCCATAGCAATGAAAGAACCTTCAATTATTGAACCGCCACAACCAAAAGTAGAAGTTAACATACCTGTAAACCCCGTAGTAATTAAAAGGGAAATTGATACACCGAAAGAAGTGCGACAATTGAAAGCAAGGAAAGTTATAAAAGCTGATGGAACTCCGAATATAAGTTTGAAAGAAGGGCACATTGTTATAAAACCTTTGAGCTCCGTCAGAACCTCGGCGCCACGGTACAACACTTATCAATGCCCTGGCTGTCCGGATATATTCACCACTTATAGATCATTGAAGGAACATGAAAAAGCCAAACACAAAAAGTCCGTTTACCTCTGCAAGTTATGTGACAAAACGTATAACACTCAGCAGTATTTAAATATACATTACAAGACTCATTGTAGAGCTAGGTGCAAGTTATGTCAAGTTATACTCCCAGAAGGGGATTTAATGGACCATTTGCGGACACTTCATCCTAATTTAGTGTACCCTTGCAAGTTCTGTGATCTAGTGTACTACACGCAAGAGTCTATGGACACACATTTCAAAATAAGCCATTTAGTGAATGATACAAGAGCTAAGTCTCAATGCGTGATGTGTCTACGGAACTTTATGGATGCTGAGATGAAGAAGCATAAGTGCAAGTTCTCATGCTCTGAATGTTTTGTCATGCCATGTATTCACTTCAAGTATTTAAATTCTTATAGAGAGCAAGTCTTGAGCCATGTAAATAAAATTAAATGTTTAGACTGTGATTATGTGACTCGGCGTAAAGAACATCTGATTGGACATGCTAATAGAGAGCATTTAGACCATCATCCGTTTACTTGTGCCGATTGTGGCCAACAGTTCTACACTAAGTTGAGTTTAAAAACACACATCATGCAATTCCATGAAGATCTCTTCTGTCCGTACTGTGACTTTGAATTCAAGGATAGCAGAACTTTAGTAACACACAGGAATGCCTGTAAACTTGTCATACGGTCATTCCAATGTACCCATTGTGTCGCGTCCTTTGATGTCGCTGAGGAGTTGACCCGGCATGAGAACTTGCAGCATAGTGAAGGAGTTTACGCTTGCACTCTTTGTAAAAGCAGATTCCTTACTGACATAGAACTACAAGAGCATCATGCGAGGGTTCATGGCGGTATACAGTGCAAGAAAAGGAGAAAACATATTGAATGCTCTATATGTGATATAATGTTTAAAAATATAAAAGAAATGCTTCAACATGAAAAATTTCACAATACAGATGAGGTTTACCCATGCAAAGTCTGCTCCAAACAGTTCAAATCGTTGATTAAATTGTACATACACAATCAAAGGCACTATACCACAAGAATAAAATGCTCAGGGTGTAATAAAAGGGTAGCTGCATCATTCTACCCCCAGCATGCGGTGAGGTGTCCGTATAAAAGAGATACAACTTTGAGCCATATCTGTGAAGTATGCGGCAAGTCTTTCCATCTGGAATCATTGTTACGTTTCCATCAAAGAATACACTTGGAGCCACAGCCATGTCCTCGATGCAACAAAGTAATCAAACCTACAAGTTTAAAAAAACATATGGAACTCCATGCAACTGGTACCGAACAAGATAAAGATATGATCACTGTAGACCTGAAACCAAAGAAAAGAGGTGTTGGTGGAGGTGGAACAAGTAAGCCATCGATTGAATGTGATTTATGTGGGCATGCAGTGAGAAAGAAATGCGATTTAGAAGCTCATATGAACCGATATCATTTGAAAATTAAACCATATATCTGTCATATATGTAACAAAGATTTCTGCGGTAAAGTTCGGCTCAAAGAGCACATGTCGACGCACACAACTGAAAACAGTTGTTTTTGTTCCATTTGTGGGAAGAAATTTGCTAACCGCGTGTGTCTTAAAATGCACATGAGAATGCATACAGGAGAAGCCCCTTACTCCTGTGACCTTTGCGGACAAAAATTCAGATCTTCAAGTATGATGAAGACTCATCGCTTGAAGAAACATTTAGAAAAAACAGTCTGTTGTCCTATGTGTGATAGTATGTTCTTTATGGCTCGAGATATGCGACATCACTTCAAGAAAGCACATTGGAAGTTCAAGGATGGAAGACCATTCAATCCTAGGGATATTAAAGAGTTACCGGAGGACTTGTATTACCTTTTTGAAGATGGTAGATTGCCAAAACTAACTCAAGATTAA
- Protein Sequence
- MDEEDELNRPNPKHLEWIKQKLKTVWTSPKFCGLCLESNGNFCSVDMELVISHQTFSKCLQDILNYVFGEDIENSMSSPHLCDSCTEKTIQSYLFIHNTKQLNKILNNCISDLDSKIIDISAQLDESITYDTANVMIVLENDTEFYKTIIDVKTVTEIVPTAKPIAMKEPSIIEPPQPKVEVNIPVNPVVIKREIDTPKEVRQLKARKVIKADGTPNISLKEGHIVIKPLSSVRTSAPRYNTYQCPGCPDIFTTYRSLKEHEKAKHKKSVYLCKLCDKTYNTQQYLNIHYKTHCRARCKLCQVILPEGDLMDHLRTLHPNLVYPCKFCDLVYYTQESMDTHFKISHLVNDTRAKSQCVMCLRNFMDAEMKKHKCKFSCSECFVMPCIHFKYLNSYREQVLSHVNKIKCLDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKDSRTLVTHRNACKLVIRSFQCTHCVASFDVAEELTRHENLQHSEGVYACTLCKSRFLTDIELQEHHARVHGGIQCKKRRKHIECSICDIMFKNIKEMLQHEKFHNTDEVYPCKVCSKQFKSLIKLYIHNQRHYTTRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRIHLEPQPCPRCNKVIKPTSLKKHMELHATGTEQDKDMITVDLKPKKRGVGGGGTSKPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYICHICNKDFCGKVRLKEHMSTHTTENSCFCSICGKKFANRVCLKMHMRMHTGEAPYSCDLCGQKFRSSSMMKTHRLKKHLEKTVCCPMCDSMFFMARDMRHHFKKAHWKFKDGRPFNPRDIKELPEDLYYLFEDGRLPKLTQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039145;
- 90% Identity
- iTF_00273864;
- 80% Identity
- -