Hamb023050.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hoplodrina ambigua
Gene Symbol
-
Assembly
GCA_949774945.1
Location
OX458990.1:9023333-9026839[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00011 0.0083 17.1 0.4 1 23 244 267 244 267 0.94
2 16 8.9e-06 0.00066 20.6 3.4 1 23 272 294 272 294 0.99
3 16 0.098 7.2 7.9 1.8 1 23 324 347 324 347 0.95
4 16 0.0011 0.082 14.0 1.0 2 23 408 430 407 430 0.96
5 16 0.00014 0.011 16.8 1.2 1 23 436 459 436 459 0.96
6 16 0.011 0.82 10.9 0.2 3 21 464 482 462 483 0.93
7 16 0.0018 0.13 13.3 0.2 1 23 491 514 491 514 0.95
8 16 0.046 3.4 8.9 0.3 2 23 555 576 554 576 0.94
9 16 0.0044 0.33 12.1 1.6 1 23 582 604 582 604 0.97
10 16 0.0054 0.4 11.8 2.7 1 23 640 662 640 662 0.96
11 16 0.059 4.4 8.6 0.2 2 23 667 688 666 688 0.93
12 16 0.0016 0.12 13.5 1.4 2 23 719 741 718 741 0.96
13 16 0.00095 0.07 14.2 3.2 1 23 747 769 747 769 0.98
14 16 0.0014 0.1 13.7 5.5 2 23 776 797 775 797 0.96
15 16 1.3e-05 0.00096 20.1 1.9 1 23 803 826 803 826 0.97
16 16 1.2 91 4.4 3.5 3 23 833 854 831 854 0.95

Sequence Information

Coding Sequence
ATGGAAGAAGATGAATTTAACCGAAACAATGTACAACATTTAGAATGGGTTAAACAAAAACTGAAGACTGTGTGGACATCTCCCAAGTTCTGCGGACTGTGTTTAGAGCACAATGGTAACTTTTGTTCCGTTGACATGGAGCTTGTTATCAGCCATCAGACGTTCTCTAAATGTTTGCAAGATATTCTGAACTATGTGTTTGGTGAAGATATTGAAAACTCAATGTCAAGCCCGCACTTGTGTGACAGTTGTACAGAGAAGACAATACAATCTTATATCTTTATACACAACACAAAACAACTGAATAAGATCCTAAACAACTGCATCTCAGACCTGGATTCTAAAGTAATCGATATCAGCGCACAACTTGATGATTCCGTTACTTATGACACTGCCAACGTAATGATTGTACTGGAGAATGACACGGAACTTTACAAAACTATCATTGACGTTAAATCAGTGACCGAAATAGTGCCAACTGCTAAACCCATAGCGATGAAAGAACCTATAAAACCTGAACCACAGCAACCAAAGGAAAATAAAGCTGAGAAAATTGAAAAACCAgtagttaatattaaaaaggaAATAGAAACACCGAAAGTGCGACAAAACAAAGTAAGGAAAGCTATAAAAGCCGATGGAACTCCGAATATTAGTTTGAAAGGAGGCCACATTGTTATAAAACCTTTAAGCTCTTTAATGAGAACCTCAGCGCCACGGTTCAACACATATGAATGCAACGACTGTCCGGAAATATTCACCAATTATAGATCATTGAAAGAACATGAAAAAGCCAAACATAAAAAGTCTGTTTACCGCTGCAAATTGTGTGATAAAACTTATAACACTCAGCAGTATTTGAACATACATTACAAGACGCATTGTAAGGACAGATGCAAGTTGTGTCAAGTTATAATGCCAGAAGAAGAATTAATGGACCACTTGCGGACACAGCATCCTAATTTAGTGCACCCTTGCAAGTTTTGTGATCTAGTTTACTACACGCAAGAGTCCATGgacacacattttaaaataagccATTTAGTGAATGATACAAGAGCTAAATCCCAATGTGTGATGTGTTTACGGAACTTTGTGGATGCTGAGATGAAGAAACATAAGTGCAAGTTCTCATGCTCGGAATGTTTTGTCATGCCATGCATTCactataggtatttaaattccTATAGGGAGCAAGTCTTAAGTcttgtaagtaaaataaaatgtttagatTGTGATTATGTGACACGACGTAAAGAACATTTAATTGGACATACGAATAGAGAGCATTTAGACCATCATCCGTTTACTTGTGCTGATTGTGGCCAACAGTTTTACACTAAGTTAAGTTTAAAGACCCACATCATGCAATTCCACGAAGATTTGTTTTGTCCATACTGTGACTTCGAATTCAAAGAAAGCAGAACTTTAGTAACGCATAGGAATGCCTGCAAACTTGTTATACGGTCATTCCAATGTACCTACTGCGTTGCATCATTTGATGTCGCTGAAGAGCTAACCCGACATGAGAACTTGCGCCATGGAGAAGAAGTGTTTGCTTGCACCCTTTGCAAAAGCAGATACCTTACTGATATAGAACTACAAGAGCATCATGCAAGGGTTCATGGCGGCATACAGTGCAAGAAAAGGAGAAAACATATTGAATGCTCTTTATGCgatataatgtttaaaaatataaaagaaatggTGCAACATGAAAAATTCCACAATGAAGATGAAGTTTTCCCTTGCAAAGTCTGCTCAAAACAGtttaaaacattgattaaaCTGTACATTCACAATCAAAGGCACTACACCACGAGAATAAAATGTTCTGGATGTAACAAGAGGGTAGCTGCATCATTCTACCCCCAGCACGCAGTCAGGTGCCCATATAAAAGAGATACAACTTTGAGCCATATCTGTGAAGTATGCGGCAAGTCTTTTCATCTGGAATCATTGCTACGATTCCATCAAAGAATCCATTTAGAACCTCAGCCATGCCCACGATGCCAAAAGGTTATCAAACctacaagtttaaaaaaacatatggAGCTTGTTCATGCTCTTGGTACAGAACAAGACAAAGATGTGAGCAGTACGGACCAGAAACCAAAGAAAAGAGGTGGTGGCGTAACAACTAAGCCATCAATTGAATGTGATTTATGTGGACATGCAGTGAGAAAGAAATGTGACTTAGAAGCTCATATGAACCGATATCATCTGAAAATCAAACCGTATATCTGTCATATATGTAAGAAAGACTTCTGTGGGAAAGTTCGGCTGAAAGAACACATAGCGACCCATACTAGTGATAACAGTTGCTTCTGTACCATTTGTGCGAAGAAATTTGCTAACCGTGTGTGTCTAAAAATGCATATGAGAATGCATACGGGAGAAGAACCATACTCCTGTGATATTTGCGGACAAACATTCAGATCTTCAAGTATGATGAAAACTCATAGACTAAAGAAACATTTAGAGAAGACTGTGTGCTGCCCTATGTGCGATAGTATGTTCTTTATGGCGCGAGACATGCGGCATCATTTCAAGAAAGCTCATTGGAAGTTCAAGGATGGAAGGCCGTTCAATCCTAAAGATATTAAAGAGTTACCGGAGGAGTTCTATTACCTTTTTGAAGATGGTAGGTTGCCAAAACTAACATAG
Protein Sequence
MEEDEFNRNNVQHLEWVKQKLKTVWTSPKFCGLCLEHNGNFCSVDMELVISHQTFSKCLQDILNYVFGEDIENSMSSPHLCDSCTEKTIQSYIFIHNTKQLNKILNNCISDLDSKVIDISAQLDDSVTYDTANVMIVLENDTELYKTIIDVKSVTEIVPTAKPIAMKEPIKPEPQQPKENKAEKIEKPVVNIKKEIETPKVRQNKVRKAIKADGTPNISLKGGHIVIKPLSSLMRTSAPRFNTYECNDCPEIFTNYRSLKEHEKAKHKKSVYRCKLCDKTYNTQQYLNIHYKTHCKDRCKLCQVIMPEEELMDHLRTQHPNLVHPCKFCDLVYYTQESMDTHFKISHLVNDTRAKSQCVMCLRNFVDAEMKKHKCKFSCSECFVMPCIHYRYLNSYREQVLSLVSKIKCLDCDYVTRRKEHLIGHTNREHLDHHPFTCADCGQQFYTKLSLKTHIMQFHEDLFCPYCDFEFKESRTLVTHRNACKLVIRSFQCTYCVASFDVAEELTRHENLRHGEEVFACTLCKSRYLTDIELQEHHARVHGGIQCKKRRKHIECSLCDIMFKNIKEMVQHEKFHNEDEVFPCKVCSKQFKTLIKLYIHNQRHYTTRIKCSGCNKRVAASFYPQHAVRCPYKRDTTLSHICEVCGKSFHLESLLRFHQRIHLEPQPCPRCQKVIKPTSLKKHMELVHALGTEQDKDVSSTDQKPKKRGGGVTTKPSIECDLCGHAVRKKCDLEAHMNRYHLKIKPYICHICKKDFCGKVRLKEHIATHTSDNSCFCTICAKKFANRVCLKMHMRMHTGEEPYSCDICGQTFRSSSMMKTHRLKKHLEKTVCCPMCDSMFFMARDMRHHFKKAHWKFKDGRPFNPKDIKELPEEFYYLFEDGRLPKLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00039145;
90% Identity
iTF_00810359;
80% Identity
-