Epro002385.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eudemis profundana
Gene Symbol
-
Assembly
GCA_947034915.1
Location
CAMQQJ010000022.1:1087503-1089824[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.5e-06 0.00036 22.0 4.1 1 23 21 44 21 44 0.95
2 19 0.0013 0.1 14.3 0.1 2 23 50 72 49 72 0.95
3 19 4.4e-05 0.0035 18.9 0.1 2 23 81 103 81 103 0.96
4 19 0.00069 0.055 15.2 2.8 2 23 112 134 111 134 0.95
5 19 0.00011 0.0088 17.7 1.4 2 23 142 164 142 164 0.95
6 19 1.9e-06 0.00015 23.2 2.2 2 23 172 194 171 194 0.96
7 19 3.4e-06 0.00027 22.4 2.5 1 23 200 223 200 223 0.98
8 19 0.018 1.4 10.7 0.8 1 23 253 276 253 276 0.97
9 19 7.4e-05 0.0059 18.2 0.7 1 23 302 325 302 325 0.98
10 19 2 1.6e+02 4.3 1.0 2 21 333 352 332 353 0.92
11 19 0.0028 0.23 13.2 0.5 3 23 363 384 362 384 0.96
12 19 0.0006 0.048 15.4 6.1 1 23 406 429 406 429 0.97
13 19 0.00048 0.038 15.7 0.5 3 23 437 458 436 458 0.96
14 19 0.00019 0.015 17.0 1.9 2 23 465 487 464 487 0.94
15 19 0.011 0.92 11.3 2.2 1 23 493 516 493 516 0.97
16 19 0.36 29 6.6 4.8 2 23 524 546 524 546 0.95
17 19 0.00041 0.033 15.9 0.5 1 23 553 576 553 576 0.97
18 19 0.31 25 6.8 0.4 1 23 583 606 583 606 0.92
19 19 0.027 2.1 10.2 2.7 3 23 620 641 619 641 0.91

Sequence Information

Coding Sequence
ATGCATTCTAATTATATAGGCGCCTACAGCACCATTAAAACACATAATACGACACTAGAATATGTATGCGATTACTGCAGCCGCACATTTACAAGAAAGTATAACTTGCAAACTCATATAGAAAACTGCCATGTCAACTCAACCAGCTATTGCGAGATCTGTGACCAGCGGTTTGGCAGTCCGGCGGGATTACAGCTTCATCTCAGCAGAGGGCACAATAGATTCCAGCAACCGTACCCAGAATGTGACATATGCGGACGGATCTTTACCAGAAAACAGAACGTCGTTTCCCACATGGTTACTGTACATTTACAAGGAGTCGGGCCTCAGATACAATGTGACATATGCTGTAAAACTTTCACTACAGAAAGGAATTTAAAGCGGCATGTGAATCAACTTCATAACCCTAACGTCCAATACCCAACTTGCGATTACTGCAAGAAGGTTTTTAAAGGAAAGCACTCGCTACTAGCTCACATTCAAGCAACTCATAATGTTCTAAAGGGAATAATCAAGTGCCATCTATGCGACAAAGTTTACACTAACAACAGGAATTTGAAGCGCCACATCGAGATGTATCACGGTCAAAAAGGAGAATTCAGATGCACGCTTTGTCCTAAAGTGTACACGTCTAACCAGAGCCTGCGTCGGCACACTAGAACCAGGCATAACACTGATCAGGAATACAAAACAGATCCTATGGAGTTGGAGACTGTTGAGTATTACAACTATGATTTCAAAGTACAGCTTCAAGAGTTCAGTTGCGAATATTGTGAAAATCATTTCGCTGAAGAACCCTCTCTCCGTCAACATGTGAAATCCGACCATACCTTCAAAATGTTCTATGAATACTGCAGAAATTCTTTGCTGAAACAGACAGGGAAAACTGAGAAGGaaagcttctataactgcgagAATTGCAATAACGCTTTCAACTCTGTCTACGAACTCAAAGACCACATGAGGACCAGCCATGATAGAGAGTATTCGCTGTCGACTTGCAACGTTTGCTTCTCCAAGTTCTACAGCAAAGAAACCATGTTTGAGCATAAGAAGATATGTCTCCCACCGCCCAACGTCAATAATTGCAACTACTGTGACAAATTATTTACTGATATTTCGAGCCTGGAGTTCCACATCAGAATCTTTCACCCGCAAGCTCAGATTGCAGATAATGACGTGTCTTCAACAAACCCTGAAGAAACAGAAGCTGGCTTCAAATGCCCTCACTGCGACCGGATGTACTACAGCGACAGATCCTTGAAGCACCATATGAAGCTAAAGCATACGACAGACGAGGTGGTGGACTGCGGCTTATgcggaaaaatctgtaataacaAGTATTATCTAGCGTCCCACATCAAAATCGTGCATAACAACGATTCCTGGTCTAAGTGCGATTATTGTGACAAACTGTTTAAATCCAAACGCAACATACGACGGCACATAGAGTACACACACTTAGGCATGCAGAGATACAAGTGTATAGAATGTGAGACTCTTTTTAAAGAGAAGCGAAGCCTTAGAAAGCATGTTCGGACAAAGCATCCAAACTCAACCATCTTCCCGCAGTGTCACATTTGTTACAAACGTTTCGAGTCAGCGAAATCCTGTAAAATTCACTTAAAACTACTCCATTCCTTCAATATGAACACTCACCCTTGTGATTTGTGCTCTGTATCCTTCAGCTCCAACGAGGCTTTAAGCATCCACCTGCAAACCAAACATTTAGCTAAAGACCAGATCTTCAAATGCGAGCCGTGCAACCTGGTCTTCAACGGCCAGGACAAGTTCGAACAACACAACGAAATCTACCACATAAGCCTGCCAATCCTGAAGCAAAAAACCTTACCCCGCTGCATTATTTGTATGAAAGACTTCAGCACGAGAAAAACTCTGAAGCGGCATATTAAGAAGTTCCACAATGACTTTGATGCGGAGGAGCTAGCTACATATGGCTCGAAGAAGCGAATGATGAACATAGACTGCACAGAATGCATTCAGCACTTCAACGATGACTTCTACTTAGACGTATACCAGAAGCTGAAACATTTGAAAGACTCAATCGTCTTCAAATGTGAAAGCTGTTCGTCTTCTTACAACTGCTTAGAGTATTGTATACAGCGACATAAGTTAGCTAATGTTGAGACTGGGAAAAGCAAGATGATTCTAAGCGAGCTGTGTACCGCTGAGATGAGCGATGAAGCTTCAAACAGCGGGTGGGTGGAGAGTGCAGAGGCTGAGAGTACGACTGGGGACTTGAATGTAAAAGTGGAACCTATGGAGGTTGATATTGTGAAGACTGAACCGATGTCACCATGA
Protein Sequence
MHSNYIGAYSTIKTHNTTLEYVCDYCSRTFTRKYNLQTHIENCHVNSTSYCEICDQRFGSPAGLQLHLSRGHNRFQQPYPECDICGRIFTRKQNVVSHMVTVHLQGVGPQIQCDICCKTFTTERNLKRHVNQLHNPNVQYPTCDYCKKVFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMYHGQKGEFRCTLCPKVYTSNQSLRRHTRTRHNTDQEYKTDPMELETVEYYNYDFKVQLQEFSCEYCENHFAEEPSLRQHVKSDHTFKMFYEYCRNSLLKQTGKTEKESFYNCENCNNAFNSVYELKDHMRTSHDREYSLSTCNVCFSKFYSKETMFEHKKICLPPPNVNNCNYCDKLFTDISSLEFHIRIFHPQAQIADNDVSSTNPEETEAGFKCPHCDRMYYSDRSLKHHMKLKHTTDEVVDCGLCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKLFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSNEALSIHLQTKHLAKDQIFKCEPCNLVFNGQDKFEQHNEIYHISLPILKQKTLPRCIICMKDFSTRKTLKRHIKKFHNDFDAEELATYGSKKRMMNIDCTECIQHFNDDFYLDVYQKLKHLKDSIVFKCESCSSSYNCLEYCIQRHKLANVETGKSKMILSELCTAEMSDEASNSGWVESAEAESTTGDLNVKVEPMEVDIVKTEPMSP