Atur050320.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:4956302-4958620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.3e-06 0.00049 22.0 4.1 1 23 16 39 16 39 0.95 2 19 0.00095 0.11 14.7 0.3 2 23 45 67 44 67 0.95 3 19 1.7e-05 0.0019 20.2 0.1 2 23 76 98 76 98 0.97 4 19 0.0022 0.25 13.5 6.0 2 23 107 129 106 129 0.95 5 19 0.00012 0.013 17.5 2.0 2 23 137 159 137 159 0.95 6 19 2.1e-06 0.00024 23.0 2.4 2 23 167 189 166 189 0.96 7 19 3.9e-06 0.00044 22.2 1.7 1 23 195 218 195 218 0.98 8 19 0.00043 0.049 15.7 0.6 1 23 250 273 250 273 0.97 9 19 0.00032 0.036 16.1 0.7 1 23 299 322 299 322 0.96 10 19 1.8 2e+02 4.3 1.6 2 22 330 350 329 350 0.93 11 19 0.0025 0.28 13.4 0.5 3 23 360 381 359 381 0.96 12 19 0.0093 1.1 11.5 8.8 1 23 403 426 403 426 0.97 13 19 0.00045 0.051 15.7 0.5 3 23 434 455 433 455 0.96 14 19 4.6e-05 0.0053 18.8 2.2 2 23 462 484 461 484 0.94 15 19 0.011 1.2 11.3 2.2 1 23 490 513 490 513 0.97 16 19 0.26 30 7.0 4.5 2 23 521 543 521 543 0.95 17 19 0.0002 0.022 16.8 0.2 1 23 550 573 550 573 0.97 18 19 0.015 1.7 10.9 1.2 1 23 580 602 580 603 0.94 19 19 0.025 2.9 10.2 2.7 3 23 618 639 617 639 0.91
Sequence Information
- Coding Sequence
- ATGTTTTATAGCGGTAATAAATCATGTAAAACAAACTCACCAGAATATGTTTGCGATTATTGTAGTCGCACATTCACAAGGAAATATAACTTGCAAACACATATTGAAAACTGCCATGTCAACTCCACATGTTACTGTGAAATCTGTGATCAGAGATTTGGCAGCCCAGCCGGCTTGCAGCTTCACTTAAGCCGAGGCCACAATAGATTCCAGCAACCATACCCAGAATGCGATATATGCGGACGCATCTTCACAAGGAAACAAAATGTCGTTTCACACATGATCACAGTTCATTTACAGGGAGCCGGGCCTCAGATACAATGCCACATTTGCTGTAAGACTTTCACCACTGAAAGGAATATGAAGAGGCATATGAACCAGCTTCACAACCCCGATGTCCAATATCCCACTTGCGATTACTGCAAAAAAACCTTCAAAGGGAAGCATTCCTTGCTAGCTCATATACAAGCCACACATAATGTTCTCAAAGGGATCATCAAGTGTCACTTATGTGACAAAGTATATACTAATAACAGAAACTTAAAGCGGCATATCGAGATGTTTCACGGAGAGAAGGGAGAGTTCAGATGCACCCTTTGCCCCAAAGTGTATACGTCTAACCAAAGTTTACGACGTCACGCGAGAACTAGACACGCGAGAAGACATAATGAACAGGACCACAAAACTGAATCTCATATGGAGCAAATCGATTATGACAACTACGATTTTAGAGTTCAGCTCCATGAGTTCTATTGCGAGTATTGTGACAAAAATTTCGCCGAAGAACTATCGCTGCGGCAACACGTGAAGTCGGACCATTCGTTTAAAATGTTCTACGAATACGCCAGGAATTCTTTACTGAAACAGATGGGGGGAAGCGGAAGGGAACGCTTCTATAATTGCGAGAATTGCAATAGCACTTTTAATTCAGTTTACGAGTTAAAGGACCACATGAGAGCTACTCATGTTAGAGAGTATTCACTTTCTACTTGTAATGTCTGCTTCTCCAAATTTTACAGTAAAGAGACCATGTTTGAGCATAAGAAGACCTGTCTCCCGCCGCCTAACGTCAATAATTGTAACTATTGTGACAAATTATTCACAGACGTATCTAGTCTCGAGTTTCATATCAGGATTTTTCACCCCCAAGCTCAAATAGCGGATAACGATGTGTCGTCGACCAACCCGGAAGAGACTGAAGCTGGCTTTAAATGCCATCATTGCGATAGGATGTACTACAGTGACCGTTCCTTGAAACACCATATAAAATTGAAACATACGACCGACGAAGCGGTCGACTGCGGATTGTGCGGGAAAATTTGCAATAACAAGTATTACTTGGCGTCCCATATTAAAATCGTACACAACAACGACTCCTGGTCGAAGTGCGATTATTGCGATAAGCAATTTAAATCCAAACGCAATATCCGGCGTCACATCGAATACACGCACTTAGGTATGCGACGATACAAATGCATTGAATGCGAGACACTATTCAAAGAAAAGAGAAGCCTTAGGAAACACGTACGGACGAAACACCCTAATTCAACCGTGTTTCCGCAATGTCATATCTGTTACAAACGCTTCGAATCGGCCAAATCGTGCAAGATTCATTTAAAACTGATCCATTCTTTCAATATGAACACGTTTCCTTGCGATCTCTGCTCAGTATCATTCAGTTCCAACGAAGCATTGAGCATCCATCTCCAAACTAAACATTTAGCGAAGGACCAGATTTTCAAATGCGAACAATGCAACATAGTTTTCAACGGATTGGACAAATTTGAGCAACACAACGAAATTCATCATGTAACTATACTTCCAAATATGAAACAGAAGACTTTGCCTCGATGTATCATATGTATGAAGGATTTCAGCACGCGAAAGACTTTGAAGCGGCATATAAAGAAGTTTCACAACGAATTCGACGTGGAAGAACTGGCGACATATGGCTCAAAGAAGCGAATGTTTAACATTGAGTGTGGAGAGTGCATACAGAATTTCAACGATGACTTTTACTTGGACGTATACCAGAAGCTGAAACATTTGAAAGACTCGATCGTGTTCAAATGCGAGAGCTGTTCCTCGTCCTATAATTGCCTGGAGTATTCGATACAGAGGGTTAAATTGTCCAATTTTGAGTCGAGTAAAAGTAAGATGATTATGAGCGAACTGTGCACGGCTGAGATGAGCGATGAAGGTTCAAACGGCTGGGTTGAAAGTGCAGAAGCTGAGAGCACCACAGGAGACTTAGCTGTGAAGTTGGAACCAATGGATGAGGTGGAGAATATCGTTAAGACTGAGCCGATGTCGCCGTAA
- Protein Sequence
- MFYSGNKSCKTNSPEYVCDYCSRTFTRKYNLQTHIENCHVNSTCYCEICDQRFGSPAGLQLHLSRGHNRFQQPYPECDICGRIFTRKQNVVSHMITVHLQGAGPQIQCHICCKTFTTERNMKRHMNQLHNPDVQYPTCDYCKKTFKGKHSLLAHIQATHNVLKGIIKCHLCDKVYTNNRNLKRHIEMFHGEKGEFRCTLCPKVYTSNQSLRRHARTRHARRHNEQDHKTESHMEQIDYDNYDFRVQLHEFYCEYCDKNFAEELSLRQHVKSDHSFKMFYEYARNSLLKQMGGSGRERFYNCENCNSTFNSVYELKDHMRATHVREYSLSTCNVCFSKFYSKETMFEHKKTCLPPPNVNNCNYCDKLFTDVSSLEFHIRIFHPQAQIADNDVSSTNPEETEAGFKCHHCDRMYYSDRSLKHHIKLKHTTDEAVDCGLCGKICNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMRRYKCIECETLFKEKRSLRKHVRTKHPNSTVFPQCHICYKRFESAKSCKIHLKLIHSFNMNTFPCDLCSVSFSSNEALSIHLQTKHLAKDQIFKCEQCNIVFNGLDKFEQHNEIHHVTILPNMKQKTLPRCIICMKDFSTRKTLKRHIKKFHNEFDVEELATYGSKKRMFNIECGECIQNFNDDFYLDVYQKLKHLKDSIVFKCESCSSSYNCLEYSIQRVKLSNFESSKSKMIMSELCTAEMSDEGSNGWVESAEAESTTGDLAVKLEPMDEVENIVKTEPMSP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- -
- 80% Identity
- -