Alat036085.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014466.1:8084510-8086792[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.9e-06 0.00039 21.8 4.3 1 23 6 29 6 29 0.95 2 19 0.00054 0.054 15.1 0.3 2 23 35 57 34 57 0.94 3 19 1.8e-05 0.0018 19.7 0.2 2 23 66 88 66 88 0.96 4 19 3.6e-05 0.0036 18.8 1.2 2 23 97 119 96 119 0.93 5 19 4.3e-05 0.0043 18.5 1.2 2 23 127 149 127 149 0.95 6 19 1.4e-06 0.00014 23.3 2.2 2 23 157 179 156 179 0.96 7 19 1.9e-06 0.00019 22.8 1.3 1 23 185 208 185 208 0.98 8 19 0.00043 0.043 15.4 2.8 1 23 237 260 237 260 0.97 9 19 0.0037 0.37 12.4 0.7 1 23 285 308 285 308 0.98 10 19 0.58 58 5.5 2.9 2 21 316 335 315 336 0.92 11 19 0.0051 0.51 12.0 0.5 2 23 345 367 345 367 0.95 12 19 0.0099 0.99 11.1 5.5 1 23 392 415 392 415 0.96 13 19 0.00066 0.066 14.8 0.5 3 23 423 444 422 444 0.97 14 19 3.5e-05 0.0035 18.8 2.2 2 23 451 473 450 473 0.94 15 19 0.0082 0.82 11.4 2.2 1 23 479 502 479 502 0.97 16 19 0.25 26 6.7 4.8 2 23 510 532 510 532 0.95 17 19 4.4e-05 0.0044 18.5 0.1 1 23 539 562 539 562 0.98 18 19 0.027 2.7 9.7 3.8 1 23 569 592 569 592 0.92 19 19 0.019 1.9 10.2 2.7 3 23 607 628 606 628 0.91
Sequence Information
- Coding Sequence
- ATGGCGTCCTACGAGTACGTCTGTGACTATTGTAGCCGTACCTTCACGCGGAAATACAACCTGCGAACACATATAGAAAATTGCCACGTGAATTCCTCTTGCAGCTGTGAGATATGCGGCCAGAGATTTGGGAGCCCTGCAGGCCTACAATTACATTATAGCAGGGGTCACAATAGATTCAGTCAACCCTTCCCGGAGTGTGATATATGCGGCCGCATTTTTACTAGAAAGCAAAATGTTATGTCGCATATGGTGACAGTACATTTACAAGGATGTGGGCCACAGATTCAATGTTACATCTGCTATAAGACTTTTACAACGGAAAGGAACTTGAAAAGGCATGTCAGTCAATTACATAACCCTGATGTCGAGTATCCTACATGCGATTACtgcaaaaaggtttttaaagggAAACACTCCTTGATAGCCCACATACAAGCCACGCATAACGTTTTCAAAGGCATTATTAAGTGTCACTTGTGTGACAAAGTTTATACTAACAACAGAAACTTGAAGCGCCACATTGAGATGTATCACGGGGAGAAAGAAGAATTCAAGTGTGATTTGTGTCCTAAAGTCTACACGTCGAATCAAAGCCTCAGACGCCACGCTCGAACGCGTCATAACACTGAGGAATATAAATCAGATTTGAATATAGACCAAGATACTAACGAATATTACCCATACGAGTACAATGCTCAACTTGAATTCCCTTGCTCATATTGCGAGAAGCATTTCTCGGAAGAGCCAATGCTACGGCACCATGTGAAAACTGAGCATTCCTTTCAAATATTCTATGAATACTGCAGGAGTTCTCTATTGAAACAGAGTAAGGAGGAAAAGACTGTCTACTACAAATGCGAGAGCTGCATCAACGTTTTCAATTCTGTATACGATCTGAAAGATCACATGAGAACCAGTCATGATAGGGAGTATTCGCTATGCACGTGCAACGTGTGCTTCACAAAATTCTACAGCAAAGAAACTATAAAAGAACACAAGAAAATATGTCTCCCACCTCCGAATGTAAACTCTTGCAACTACTGTGACAAGCTATTCACAGATATATCGAGCTTAGAGTTTCATGTAAGAATATTTCATCCGCAAGCACAAATCGCTGAGAATGACGTCACTTCGACTAACTTAGAAGACGTGACTGCAGATGCTGGTGCTTTCAAATGCGAGCACTGTGATCGGATTTATTACAGCGACCGATCGCTGAAGCATCACGTCAAACTGAAGCATACTACAGACGAAGCGGTTGATTGCGGAATCTGCGGCAAACTCTGCAACAACAAATACTATCTAGCGTCTCACATCAAAATCGTGCATAACAACGATTCCTGGTCGAAATGTGATTATTGCGACAAACAATTCAAATCGAAGAGAAACATTCGTCGGCATATCGAGTATACTCATTTGGGCATGCAAAGATACAAGTGCATCGAGTGCGAAACGCTTTTCAAGGAGAAACGGAGCCTCAGGAAGCATGTTAGGACGAAGCATCCGAACTCTACAATATTCCCCCAATGCCATATCTGCTACAAACGATTCGAATCAGCCAAATCGTGCAAGATACATCTTAAACTACTCCATTCTTTTAACATGAATACATACCCCTGTGACCTTTGCTCGGTATCCTTCAGTTCTAACGAAGCTTTGAACATACATCTTCAGACTAAGCATCTAGCTGAAGACCAGATCTTCAAATGTGAACAGTGCAACCTGGTCTTCACGGGGCAGGAGAAATTCGAACACCACAACGAAATATGCCACGTGAATTTAGTTCCGATTATCAAACAGAAAGTCCTGCCCCGCTGCATTATATGCATGAAAGATTTCAGCACCCGAAAAACTTTGAAGCGTCACATAAAGAAGTTTCATAATAACTTTGATCCTGAAGAGCTAGCTACTTACGGCTCTAAGAATCGTATGTCGCTTGTCGAATGCGAGGAATGCATACAGAATTTCAACGATGATTTCTATTTCGACGTCTATCAGAAACTAAAGCATTTGAGGGACTCTATCATCTTTAAGTGTGATAGTTGTTCGACATCCTACGATTGCTTGGCGTATTCTATTCAGAGATACAAGGCGGCTAATTTCGAGGTGTCGAAAAGCAAAATGATATTGAGCGAACTGTGTACTGCTGAAATGAGTGACGAAACTTCGAATAACAGCGGGTTTGGATTCATGGAACCCGAAAGCACGACTGGTGATATCGTTAAATCGGAATCTATGGATGTGGATCTCGAAATCAAACCTGAGGCTATGTCGCCATAA
- Protein Sequence
- MASYEYVCDYCSRTFTRKYNLRTHIENCHVNSSCSCEICGQRFGSPAGLQLHYSRGHNRFSQPFPECDICGRIFTRKQNVMSHMVTVHLQGCGPQIQCYICYKTFTTERNLKRHVSQLHNPDVEYPTCDYCKKVFKGKHSLIAHIQATHNVFKGIIKCHLCDKVYTNNRNLKRHIEMYHGEKEEFKCDLCPKVYTSNQSLRRHARTRHNTEEYKSDLNIDQDTNEYYPYEYNAQLEFPCSYCEKHFSEEPMLRHHVKTEHSFQIFYEYCRSSLLKQSKEEKTVYYKCESCINVFNSVYDLKDHMRTSHDREYSLCTCNVCFTKFYSKETIKEHKKICLPPPNVNSCNYCDKLFTDISSLEFHVRIFHPQAQIAENDVTSTNLEDVTADAGAFKCEHCDRIYYSDRSLKHHVKLKHTTDEAVDCGICGKLCNNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALNIHLQTKHLAEDQIFKCEQCNLVFTGQEKFEHHNEICHVNLVPIIKQKVLPRCIICMKDFSTRKTLKRHIKKFHNNFDPEELATYGSKNRMSLVECEECIQNFNDDFYFDVYQKLKHLRDSIIFKCDSCSTSYDCLAYSIQRYKAANFEVSKSKMILSELCTAEMSDETSNNSGFGFMEPESTTGDIVKSESMDVDLEIKPEAMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_00009318;
- 80% Identity
- iTF_00010394;