Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000050.1:1894206-1896518[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0018 2.1 9.4 1.5 18 43 7 29 2 30 0.92

2 16 0.0038 4.6 8.3 0.0 18 43 66 88 65 89 0.92

3 16 0.0011 1.4 10.0 0.6 17 43 96 119 94 120 0.91

4 16 0.0012 1.5 9.8 0.3 18 44 127 150 125 150 0.92

5 16 3.9e-05 0.048 14.6 0.7 16 43 155 179 152 180 0.91

6 16 0.0078 9.4 7.3 0.4 17 44 185 209 181 209 0.89

7 16 2.5 3.1e+03 -0.8 0.1 19 43 292 313 287 314 0.77

8 16 5.2 6.3e+03 -1.8 0.9 17 27 320 330 304 335 0.58

9 16 0.039 47 5.0 0.0 15 44 347 373 343 373 0.76

10 16 0.1 1.2e+02 3.7 3.2 12 43 392 420 387 421 0.85

11 16 0.15 1.9e+02 3.1 7.9 6 29 415 438 412 450 0.70

12 16 0.0037 4.5 8.3 2.7 13 43 451 478 442 479 0.78

13 16 0.075 92 4.1 0.8 17 44 484 508 480 508 0.85

14 16 0.92 1.1e+03 0.6 0.3 19 43 546 567 540 568 0.78

15 16 5.2 6.3e+03 -1.7 0.4 13 28 570 585 563 590 0.80

16 16 0.0017 2.1 9.4 1.9 18 43 611 633 596 634 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0018	2.1	9.4	1.5	18	43	7	29	2	30	0.92
2	16	0.0038	4.6	8.3	0.0	18	43	66	88	65	89	0.92
3	16	0.0011	1.4	10.0	0.6	17	43	96	119	94	120	0.91
4	16	0.0012	1.5	9.8	0.3	18	44	127	150	125	150	0.92
5	16	3.9e-05	0.048	14.6	0.7	16	43	155	179	152	180	0.91
6	16	0.0078	9.4	7.3	0.4	17	44	185	209	181	209	0.89
7	16	2.5	3.1e+03	-0.8	0.1	19	43	292	313	287	314	0.77
8	16	5.2	6.3e+03	-1.8	0.9	17	27	320	330	304	335	0.58
9	16	0.039	47	5.0	0.0	15	44	347	373	343	373	0.76
10	16	0.1	1.2e+02	3.7	3.2	12	43	392	420	387	421	0.85
11	16	0.15	1.9e+02	3.1	7.9	6	29	415	438	412	450	0.70
12	16	0.0037	4.5	8.3	2.7	13	43	451	478	442	479	0.78
13	16	0.075	92	4.1	0.8	17	44	484	508	480	508	0.85
14	16	0.92	1.1e+03	0.6	0.3	19	43	546	567	540	568	0.78
15	16	5.2	6.3e+03	-1.7	0.4	13	28	570	585	563	590	0.80
16	16	0.0017	2.1	9.4	1.9	18	43	611	633	596	634	0.80

Sequence Information

Coding Sequence: ATGGCATCATCAGAATACGAGTGTGACTACTGCACTCGCACTTTTACAAGAAAATACAACTTATCAACACACATAGAAAACTGTCACATAAACTCTACATGCTACTGCGACATATGTGACCAAAGATTCGGCAGTCCGGCCGGCTTACAACTCCATTTAAGTCGCGGCCATAATAGGTTCCTGCAACCATACCCCGAATGTGACTTGTGCGGACGTATCTTCACTAGAAAACAAAATGTGGTGTCACATATGGTCACCGTCCATCTACAAGGCTTGGGACCTCAGATACAGTGTAATATCtgctttaaaacttttactACCGAAAGGAATCTTAAAAGACATGTGAATCAACTACATAATCCTGATGTAGAGTATCCTACTTGTGATTATTGTAGCAAAGTATTCAAAGGCAAGCATTCTCTAATAGCTCATATACAAGCTACGCATAATGTCTTAAAAGAGATCATAAAATGCGACCTCTGTGGCAAAGTTTATACAAACAATAGGAATCTGAAGAGGCACATTGAAATGTTTCATGGTGAGAAAGGAGAATTTAGATGTGATCTCTGCCCCAAAGTATACACATCTAACCAGAGCTTGAGACGCCATGCTCGCACGAGGCATAACACTGACGAATTTAGCAATAAACCTGATATTATAGAAATAGAAGACACAAATGATGTAGTTTTCGCGTACAAAAGTCTTGAATTCCCTTGCCCGTACTGCGACACGCATTTCGTAGAAGAACCTATGCTTCGACAGCATGTTAAAGCTGAGCATTCATTTAAAACCTTTTACGATTACTGCAAAAATTCTTTGCTTAAACAAATGGCTGTTAAAACTGAAGAGAAAGCAGTTAAAGTGAATTATAACTGTGAAAACTGTAGCGCCGTTTTTAACTCGGTTTATGAATTGAAGGACCATATGAGAGCCAGTCATGATAAAGAGTATTCTCTTAGCACTTGTAATGTATGCTTCAGGAAGTTCTACAGCAAAGAAACTATGTTTGAGCATAAGAAGATATGCTTACCCCCTCCTAATGTCAATTCTTGCAATTACTGTGACAAACTTTTCACTGACATCTCTAGTCTAGAGTTTCACGTAAGAATTTTCCATCCGCAAGCTCAGATAGCTGATAATGACGTCACTTCTACTAATTTAGAAGACACATCGATGGAGGCAGGCTCCTTTAAATGCGAACACTGTGATAGAATGTATTATAGTGATCGTTCTCTCAAACATCATATCAAGTTAAAACACACGACAGATGAAGTTGTAGAATGTGGTTTGTGTGGAAAAATCTGCAGCAATAAATACTATCTTGCATCCCATATTAAGATTGTCCATAACAACGATTCTTGGTCGAAATGCGATTATTGCGACAAACAATTCAAATCCAAGAGAAACATAAGAAGACACATAGAATACACACATTTAGGAATGCAAAGATACAAGTGCATAGAATGCGAGACCCTTTTCAAAGAGAAAAGAAGTCTCCGAAAGCATGTAAGAACAAAGCATCCCAATTCTACAATCTTCCCGCAATGCCATATTTGCTATAAGCGATTTGAATCGGCTAAATCGTGTAAGATACATCTTAAACTCTTGCACTCGTTCAACATGAATACATACCCTTGCGATCTTTGCTCAGTATCTTTTAGCTCGAGTGAAGCTCTGAACATACATTTGCAAACGAAGCATTTAGCTGAGGACCAGATTTTTAAATGCGAGCAATGCAATCTTGTGTTCAATGGGCAGGAAAAATTCGAGCAGCACAATGACATATGTCATGTGAACTTACTCCCAAATGTAAAACAGAAGGTGTTACCACGTTGCATTATATGCATCAAAGATTTCAGCACCCGGAAAACTTTGAAACGGCACATAAAGAAGTTCCATGATGACTTCGATGCGGAAGAGCTGGCGACGTATGGTTCGAAGAAAAGAATGTTTAATATAGAGTGTGATGAGTGCATTCAGAATTTCAACGACGATTTCTATTACGATGTGTATCAAAAATTGAAGCATTTGAAAGACTCTATTGTATTTAAGTGTGAAAGTTGTTCGTCGTCTTATGATTGTCTGGAGTATTCTATCCAGAGGTATAAATTGATGAATTTAGAAGCTTGTAAAAGTAAGATGATTCTAAGTGAGCTTTGTACTGCTGAAATGAGTGATGAAGCTTCTAATAATGGGTTGGGGATGGAGTGTATGGAACCTGAAAGTACTACGGGGGATATTAATGTCAAATCGGAACCTATGGACTTCGAGGTTGATACAGAGGCTATCAAGGCTGAACCTATGTCTCCATAG
Protein Sequence: MASSEYECDYCTRTFTRKYNLSTHIENCHINSTCYCDICDQRFGSPAGLQLHLSRGHNRFLQPYPECDLCGRIFTRKQNVVSHMVTVHLQGLGPQIQCNICFKTFTTERNLKRHVNQLHNPDVEYPTCDYCSKVFKGKHSLIAHIQATHNVLKEIIKCDLCGKVYTNNRNLKRHIEMFHGEKGEFRCDLCPKVYTSNQSLRRHARTRHNTDEFSNKPDIIEIEDTNDVVFAYKSLEFPCPYCDTHFVEEPMLRQHVKAEHSFKTFYDYCKNSLLKQMAVKTEEKAVKVNYNCENCSAVFNSVYELKDHMRASHDKEYSLSTCNVCFRKFYSKETMFEHKKICLPPPNVNSCNYCDKLFTDISSLEFHVRIFHPQAQIADNDVTSTNLEDTSMEAGSFKCEHCDRMYYSDRSLKHHIKLKHTTDEVVECGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSSEALNIHLQTKHLAEDQIFKCEQCNLVFNGQEKFEQHNDICHVNLLPNVKQKVLPRCIICIKDFSTRKTLKRHIKKFHDDFDAEELATYGSKKRMFNIECDECIQNFNDDFYYDVYQKLKHLKDSIVFKCESCSSSYDCLEYSIQRYKLMNLEACKSKMILSELCTAEMSDEASNNGLGMECMEPESTTGDINVKSEPMDFEVDTEAIKAEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680825;
90% Identity: iTF_00462589;
80% Identity: iTF_00325641;