Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:8423562-8425874[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0015 1.5 9.5 1.0 18 43 7 29 4 30 0.94

2 17 0.0038 3.6 8.3 0.0 18 43 66 88 65 89 0.92

3 17 0.0011 1.1 10.0 0.6 17 43 96 119 94 120 0.91

4 17 0.0012 1.2 9.8 0.3 18 44 127 150 125 150 0.92

5 17 2.7e-05 0.026 15.1 0.7 15 43 154 179 152 180 0.91

6 17 0.073 69 4.2 0.6 18 44 186 209 181 209 0.89

7 17 2.5 2.4e+03 -0.7 0.0 19 43 239 260 237 261 0.68

8 17 0.47 4.5e+02 1.6 0.1 19 43 292 313 287 314 0.81

9 17 8.1 7.8e+03 -2.4 0.2 18 27 321 330 319 334 0.77

10 17 0.034 33 5.2 0.2 15 44 347 373 337 373 0.77

11 17 0.076 72 4.1 2.9 11 43 391 420 387 421 0.85

12 17 0.086 83 3.9 7.3 5 29 414 438 411 450 0.71

13 17 0.0013 1.3 9.7 3.1 12 43 450 478 440 479 0.79

14 17 0.075 72 4.1 0.8 17 44 484 508 480 508 0.85

15 17 1.3 1.3e+03 0.1 0.3 19 43 546 567 542 568 0.72

16 17 5.5 5.2e+03 -1.8 0.6 13 28 570 585 565 592 0.80

17 17 0.0015 1.4 9.6 1.8 18 43 611 633 595 634 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0015	1.5	9.5	1.0	18	43	7	29	4	30	0.94
2	17	0.0038	3.6	8.3	0.0	18	43	66	88	65	89	0.92
3	17	0.0011	1.1	10.0	0.6	17	43	96	119	94	120	0.91
4	17	0.0012	1.2	9.8	0.3	18	44	127	150	125	150	0.92
5	17	2.7e-05	0.026	15.1	0.7	15	43	154	179	152	180	0.91
6	17	0.073	69	4.2	0.6	18	44	186	209	181	209	0.89
7	17	2.5	2.4e+03	-0.7	0.0	19	43	239	260	237	261	0.68
8	17	0.47	4.5e+02	1.6	0.1	19	43	292	313	287	314	0.81
9	17	8.1	7.8e+03	-2.4	0.2	18	27	321	330	319	334	0.77
10	17	0.034	33	5.2	0.2	15	44	347	373	337	373	0.77
11	17	0.076	72	4.1	2.9	11	43	391	420	387	421	0.85
12	17	0.086	83	3.9	7.3	5	29	414	438	411	450	0.71
13	17	0.0013	1.3	9.7	3.1	12	43	450	478	440	479	0.79
14	17	0.075	72	4.1	0.8	17	44	484	508	480	508	0.85
15	17	1.3	1.3e+03	0.1	0.3	19	43	546	567	542	568	0.72
16	17	5.5	5.2e+03	-1.8	0.6	13	28	570	585	565	592	0.80
17	17	0.0015	1.4	9.6	1.8	18	43	611	633	595	634	0.80

Sequence Information

Coding Sequence: ATGGCGTCACCAGAATACGAGTGCGACTACTGCACACGCACTTTCACAAGGAAATATAACCTGTCAACACACATAGAAAACTGTCACATAAACTCGACATGCTACTGCGACATATGTGACCAAAGATTTGGGAGTCCAGCAGGCTTACAGCTCCATTTAAGTCGGGGCCATAACAGGTTCCTGCAACCATACCCGGAATGCGACCTATGTGGACGTATATTTACTAGAAAACAAAATGTGGTATCACATATGGTTACCGTCCATCTACAAGGTTTAGGACCGCAGATACAGTGTAACATTTGCTTTAAAACTTTTACTACAGAAAGGAATCTTAAAAGGCATGTAAATCAACTACACAATCCGGATGTAGAATATCCTACGTGTGACTATTGTAGCAAGGTATTCAAAGGCAAGCATTCTCTAATAGCTCACATACAAGCTACGCATAATGTCTTAAAAGGGATTATAAAATGTGATCTATGTGGCAAAGTATACACGAATAACAGGAATTTGAAGAGACATATTGAAATGTTTCATGGTGAGAAGGAGGAGTTTAGATGTGATCGTTGTCCTAAAGTATACACATCTAACCAGAGCTTGAGACGTCATGCACGTACGAGACATAACACAGAAGAATTTAACAATAAACCTGATATTATAGAAATAGAAGACACCAATGATGTATTCTACGTGTATAAAACTCTTGAATTCCCTTGCCCGTACTGCGATAAACATTTCGCAGAGGAACCTGTGTTGCGACAGCATGTTAAAGCCGAGCATTCCTTTAAAACCTTTTATGAATACTGCAGAAACTTTTTGCTCAAACAAGCGGCAGTTAAACCTGAAGAGAAACCAGTTAAAGTTAACTATAACTGTGAGAGCTGTAGTGCCGTTTTTAACTCAGTGTACGAATTGAAGGACCACATGAGAACAAGTCATGACAAAGAGTATTCTCTGAGCACCTGTAACGTATGCTTTAAAAGGTTTTACAGTAAAGAAACCATGTTTGAGCATAAGAAGTTGTGTTTACCGCCTCCTAATGTCAACTCATGCAATTACTGTGATAAGCTTTTCACTGACATTTCGAGTCTAGAGTTCCATGTAAGGATTTTTCATCCGCAAGCTCAGATAGCAGTTAATGACGTCACTTCGACTAATGTAGAGGACACATCGATGGAAGCAGGTTCATTTAAATGTGAACATTGTGATAGAATGTATTACAGTGATCGTTCTCTCAAACATCATATCAAATTGAAACACACGACAGATGAAGTAGTGGAATGTGGTCTATGTGGAAAAATCTGCAGCAACAAATACTATCTGGCGTCGCATATTAAGATAGTCCATAACAACGACTCCTGGTCGAAATGTGATTATTGTGAAAAACAATTTAAATCCAAGAGAAACATAAGAAGGCACATCGAATACACGCATTTAGGGATGCAAAGATACAAATGCATCGAATGTGAAACCCTTTTCAAAGAGAAAAGAAGTCTCCGTAAGCATGTCAGAACGAAGCATCCTAATTCTACAATCTTCCCCCAATGCCATATTTGCTATAAGCGTTTCGAATCCGCCAAATCGTGCAAGATACATCTTAAACTTTTACATTCGTTCAACATGAATACATACCCTTGCGATCTTTGCTCAGTGTCTTTTAGCTCAAATGAGGCCCTGAGTATCCATTTGCAAACTAAGCATCTAGCTGAAGACCAGATCTTCAAATGTGAGCAATGCAACCTTGTCTTCAATGGCCAGGAGAAATTTGAACACCACAACGAAATATGTCACGTGAATTTACTACCAAATGTAAAACAGAAAGTGCTACCACGTTGCATAATATGCATCAAAGATTTTAGTACCCGTAAAACTTTGAAACGACACATCAAGAAGTTCCATGATGATTTCGACGCGGAAGAGTTGGCGACTTACGGTTCAAAGAAGAGAATGTTCAATATAGAGTGTGATGAGTGTATTCAAAATTTCAACGACGACTTCTACTACGATGTGTATCAAAAGCTGAGGCATTTGAAAGACTCTGTTGTCTTCAAGTGTGAAAGTTGTTCGTCGTCCTATGATTGTCTGGAATATTCTATCCAGAGGTACAAATTGATGAATTTAGAAGCGTGTAAAAGTAAGATGATTCTGAGTGAGCTGTGCACGGCCGAGATGAGTGACGAGGCGTCTAATAGTGGGTTTGGTATGGAGTTCATGGAACCAGAAAGTACTACGGGGGATATTAGTGTCAAAACAGAACCTATGGACTTTGAAGTTGATACAGAGGCTATCAAGGCTGAACCTATGACTCCATAG
Protein Sequence: MASPEYECDYCTRTFTRKYNLSTHIENCHINSTCYCDICDQRFGSPAGLQLHLSRGHNRFLQPYPECDLCGRIFTRKQNVVSHMVTVHLQGLGPQIQCNICFKTFTTERNLKRHVNQLHNPDVEYPTCDYCSKVFKGKHSLIAHIQATHNVLKGIIKCDLCGKVYTNNRNLKRHIEMFHGEKEEFRCDRCPKVYTSNQSLRRHARTRHNTEEFNNKPDIIEIEDTNDVFYVYKTLEFPCPYCDKHFAEEPVLRQHVKAEHSFKTFYEYCRNFLLKQAAVKPEEKPVKVNYNCESCSAVFNSVYELKDHMRTSHDKEYSLSTCNVCFKRFYSKETMFEHKKLCLPPPNVNSCNYCDKLFTDISSLEFHVRIFHPQAQIAVNDVTSTNVEDTSMEAGSFKCEHCDRMYYSDRSLKHHIKLKHTTDEVVECGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDQIFKCEQCNLVFNGQEKFEHHNEICHVNLLPNVKQKVLPRCIICIKDFSTRKTLKRHIKKFHDDFDAEELATYGSKKRMFNIECDECIQNFNDDFYYDVYQKLRHLKDSVVFKCESCSSSYDCLEYSIQRYKLMNLEACKSKMILSELCTAEMSDEASNSGFGMEFMEPESTTGDISVKTEPMDFEVDTEAIKAEPMTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680825;
90% Identity: iTF_00462589;
80% Identity: iTF_00155512;