Acra005312.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402074.1:8423562-8425874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1e-05 0.00071 20.5 4.3 1 23 6 29 6 29 0.95 2 19 0.00076 0.051 14.6 0.3 2 23 35 57 34 57 0.95 3 19 9.6e-05 0.0065 17.5 0.2 2 23 66 88 66 88 0.96 4 19 5.6e-06 0.00038 21.3 1.4 2 23 97 119 96 119 0.95 5 19 6.4e-05 0.0043 18.0 0.9 2 23 127 149 127 149 0.95 6 19 6e-07 4e-05 24.4 0.6 2 23 157 179 156 179 0.96 7 19 5.7e-06 0.00039 21.3 1.7 1 23 185 208 185 208 0.98 8 19 0.0013 0.089 13.9 0.2 1 23 237 260 237 260 0.94 9 19 0.00016 0.011 16.8 0.4 1 23 290 313 290 313 0.98 10 19 0.048 3.2 9.0 1.4 2 21 321 340 320 341 0.93 11 19 0.0053 0.36 12.0 0.5 2 23 350 372 350 372 0.95 12 19 0.0026 0.18 13.0 6.1 1 23 397 420 397 420 0.97 13 19 7.2e-05 0.0049 17.9 0.3 2 23 427 449 426 449 0.96 14 19 0.00013 0.0086 17.1 2.2 2 23 456 478 455 478 0.94 15 19 0.0085 0.58 11.3 2.2 1 23 484 507 484 507 0.97 16 19 0.27 18 6.6 4.8 2 23 515 537 515 537 0.95 17 19 0.00012 0.0079 17.2 0.1 1 23 544 567 544 567 0.98 18 19 0.057 3.9 8.7 3.7 1 23 574 597 574 597 0.92 19 19 0.026 1.7 9.8 2.2 5 23 614 633 611 633 0.89
Sequence Information
- Coding Sequence
- ATGGCGTCACCAGAATACGAGTGCGACTACTGCACACGCACTTTCACAAGGAAATATAACCTGTCAACACACATAGAAAACTGTCACATAAACTCGACATGCTACTGCGACATATGTGACCAAAGATTTGGGAGTCCAGCAGGCTTACAGCTCCATTTAAGTCGGGGCCATAACAGGTTCCTGCAACCATACCCGGAATGCGACCTATGTGGACGTATATTTACTAGAAAACAAAATGTGGTATCACATATGGTTACCGTCCATCTACAAGGTTTAGGACCGCAGATACAGTGTAACATTTGCTTTAAAACTTTTACTACAGAAAGGAATCTTAAAAGGCATGTAAATCAACTACACAATCCGGATGTAGAATATCCTACGTGTGACTATTGTAGCAAGGTATTCAAAGGCAAGCATTCTCTAATAGCTCACATACAAGCTACGCATAATGTCTTAAAAGGGATTATAAAATGTGATCTATGTGGCAAAGTATACACGAATAACAGGAATTTGAAGAGACATATTGAAATGTTTCATGGTGAGAAGGAGGAGTTTAGATGTGATCGTTGTCCTAAAGTATACACATCTAACCAGAGCTTGAGACGTCATGCACGTACGAGACATAACACAGAAGAATTTAACAATAAACCTGATATTATAGAAATAGAAGACACCAATGATGTATTCTACGTGTATAAAACTCTTGAATTCCCTTGCCCGTACTGCGATAAACATTTCGCAGAGGAACCTGTGTTGCGACAGCATGTTAAAGCCGAGCATTCCTTTAAAACCTTTTATGAATACTGCAGAAACTTTTTGCTCAAACAAGCGGCAGTTAAACCTGAAGAGAAACCAGTTAAAGTTAACTATAACTGTGAGAGCTGTAGTGCCGTTTTTAACTCAGTGTACGAATTGAAGGACCACATGAGAACAAGTCATGACAAAGAGTATTCTCTGAGCACCTGTAACGTATGCTTTAAAAGGTTTTACAGTAAAGAAACCATGTTTGAGCATAAGAAGTTGTGTTTACCGCCTCCTAATGTCAACTCATGCAATTACTGTGATAAGCTTTTCACTGACATTTCGAGTCTAGAGTTCCATGTAAGGATTTTTCATCCGCAAGCTCAGATAGCAGTTAATGACGTCACTTCGACTAATGTAGAGGACACATCGATGGAAGCAGGTTCATTTAAATGTGAACATTGTGATAGAATGTATTACAGTGATCGTTCTCTCAAACATCATATCAAATTGAAACACACGACAGATGAAGTAGTGGAATGTGGTCTATGTGGAAAAATCTGCAGCAACAAATACTATCTGGCGTCGCATATTAAGATAGTCCATAACAACGACTCCTGGTCGAAATGTGATTATTGTGAAAAACAATTTAAATCCAAGAGAAACATAAGAAGGCACATCGAATACACGCATTTAGGGATGCAAAGATACAAATGCATCGAATGTGAAACCCTTTTCAAAGAGAAAAGAAGTCTCCGTAAGCATGTCAGAACGAAGCATCCTAATTCTACAATCTTCCCCCAATGCCATATTTGCTATAAGCGTTTCGAATCCGCCAAATCGTGCAAGATACATCTTAAACTTTTACATTCGTTCAACATGAATACATACCCTTGCGATCTTTGCTCAGTGTCTTTTAGCTCAAATGAGGCCCTGAGTATCCATTTGCAAACTAAGCATCTAGCTGAAGACCAGATCTTCAAATGTGAGCAATGCAACCTTGTCTTCAATGGCCAGGAGAAATTTGAACACCACAACGAAATATGTCACGTGAATTTACTACCAAATGTAAAACAGAAAGTGCTACCACGTTGCATAATATGCATCAAAGATTTTAGTACCCGTAAAACTTTGAAACGACACATCAAGAAGTTCCATGATGATTTCGACGCGGAAGAGTTGGCGACTTACGGTTCAAAGAAGAGAATGTTCAATATAGAGTGTGATGAGTGTATTCAAAATTTCAACGACGACTTCTACTACGATGTGTATCAAAAGCTGAGGCATTTGAAAGACTCTGTTGTCTTCAAGTGTGAAAGTTGTTCGTCGTCCTATGATTGTCTGGAATATTCTATCCAGAGGTACAAATTGATGAATTTAGAAGCGTGTAAAAGTAAGATGATTCTGAGTGAGCTGTGCACGGCCGAGATGAGTGACGAGGCGTCTAATAGTGGGTTTGGTATGGAGTTCATGGAACCAGAAAGTACTACGGGGGATATTAGTGTCAAAACAGAACCTATGGACTTTGAAGTTGATACAGAGGCTATCAAGGCTGAACCTATGACTCCATAG
- Protein Sequence
- MASPEYECDYCTRTFTRKYNLSTHIENCHINSTCYCDICDQRFGSPAGLQLHLSRGHNRFLQPYPECDLCGRIFTRKQNVVSHMVTVHLQGLGPQIQCNICFKTFTTERNLKRHVNQLHNPDVEYPTCDYCSKVFKGKHSLIAHIQATHNVLKGIIKCDLCGKVYTNNRNLKRHIEMFHGEKEEFRCDRCPKVYTSNQSLRRHARTRHNTEEFNNKPDIIEIEDTNDVFYVYKTLEFPCPYCDKHFAEEPVLRQHVKAEHSFKTFYEYCRNFLLKQAAVKPEEKPVKVNYNCESCSAVFNSVYELKDHMRTSHDKEYSLSTCNVCFKRFYSKETMFEHKKLCLPPPNVNSCNYCDKLFTDISSLEFHVRIFHPQAQIAVNDVTSTNVEDTSMEAGSFKCEHCDRMYYSDRSLKHHIKLKHTTDEVVECGLCGKICSNKYYLASHIKIVHNNDSWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTIFPQCHICYKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDQIFKCEQCNLVFNGQEKFEHHNEICHVNLLPNVKQKVLPRCIICIKDFSTRKTLKRHIKKFHDDFDAEELATYGSKKRMFNIECDECIQNFNDDFYYDVYQKLRHLKDSVVFKCESCSSSYDCLEYSIQRYKLMNLEACKSKMILSELCTAEMSDEASNSGFGMEFMEPESTTGDISVKTEPMDFEVDTEAIKAEPMTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680825;
- 90% Identity
- iTF_00462589;
- 80% Identity
- iTF_00155497;